BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013564
         (807 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]    47   3e-08
ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi...    47   3e-08
ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containi...    44   8e-06

>emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
          Length = 1173

 Score = 47.0 bits (110), Expect(3) = 3e-08
 Identities = 25/44 (56%), Positives = 29/44 (65%)
 Frame = +1

Query: 553 GYDNVDKACKVL*DSIMQGYFSG*RTSCTLADGLC*EGKLDKMK 684
           G  + D+A  VL  S+ QGYF G +T   LAD LC EGKLDKMK
Sbjct: 435 GDGSTDEAYHVLKHSLEQGYFPGKKTFSILADALCQEGKLDKMK 478



 Score = 33.1 bits (74), Expect(3) = 3e-08
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +3

Query: 393 ENFLLIIPVTMSAAVYIFCKAGMVYVALDQY 485
           E  +L   VTM+A +  FCKAGMV VAL+ Y
Sbjct: 381 EGQILPDKVTMNAVLCFFCKAGMVDVALELY 411



 Score = 23.5 bits (49), Expect(3) = 3e-08
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 491 RSKSELSLNSLA*NYVINT 547
           R++  LS NS+A NY+INT
Sbjct: 414 RAEFGLSPNSMAYNYLINT 432


>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Vitis vinifera]
          Length = 881

 Score = 47.0 bits (110), Expect(3) = 3e-08
 Identities = 25/44 (56%), Positives = 29/44 (65%)
 Frame = +1

Query: 553 GYDNVDKACKVL*DSIMQGYFSG*RTSCTLADGLC*EGKLDKMK 684
           G  + D+A  VL  S+ QGYF G +T   LAD LC EGKLDKMK
Sbjct: 435 GDGSTDEAYHVLKHSLEQGYFPGKKTFSILADALCQEGKLDKMK 478



 Score = 33.1 bits (74), Expect(3) = 3e-08
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +3

Query: 393 ENFLLIIPVTMSAAVYIFCKAGMVYVALDQY 485
           E  +L   VTM+A +  FCKAGMV VAL+ Y
Sbjct: 381 EGQILPDKVTMNAVLCFFCKAGMVDVALELY 411



 Score = 23.5 bits (49), Expect(3) = 3e-08
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 491 RSKSELSLNSLA*NYVINT 547
           R++  LS NS+A NY+INT
Sbjct: 414 RAEFGLSPNSMAYNYLINT 432


>ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Cucumis sativus]
          Length = 913

 Score = 43.9 bits (102), Expect(2) = 8e-06
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +1

Query: 562 NVDKACKVL*DSIMQGYFSG*RTSCTLADGLC*EGKLDKMK 684
           + D+A ++L  SI +GYF G +T   LA  LC EGKLDKMK
Sbjct: 462 STDEAYRILKCSIYEGYFPGKKTFSILASALCREGKLDKMK 502



 Score = 32.0 bits (71), Expect(2) = 8e-06
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +3

Query: 417 VTMSAAVYIFCKAGMVYVALDQY 485
           VTM AA+   CKAGMV VAL+ Y
Sbjct: 413 VTMDAAMCFLCKAGMVEVALELY 435