BLASTX nr result
ID: Coptis24_contig00013564
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013564 (807 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera] 47 3e-08 ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi... 47 3e-08 ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containi... 44 8e-06 >emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera] Length = 1173 Score = 47.0 bits (110), Expect(3) = 3e-08 Identities = 25/44 (56%), Positives = 29/44 (65%) Frame = +1 Query: 553 GYDNVDKACKVL*DSIMQGYFSG*RTSCTLADGLC*EGKLDKMK 684 G + D+A VL S+ QGYF G +T LAD LC EGKLDKMK Sbjct: 435 GDGSTDEAYHVLKHSLEQGYFPGKKTFSILADALCQEGKLDKMK 478 Score = 33.1 bits (74), Expect(3) = 3e-08 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = +3 Query: 393 ENFLLIIPVTMSAAVYIFCKAGMVYVALDQY 485 E +L VTM+A + FCKAGMV VAL+ Y Sbjct: 381 EGQILPDKVTMNAVLCFFCKAGMVDVALELY 411 Score = 23.5 bits (49), Expect(3) = 3e-08 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 491 RSKSELSLNSLA*NYVINT 547 R++ LS NS+A NY+INT Sbjct: 414 RAEFGLSPNSMAYNYLINT 432 >ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like [Vitis vinifera] Length = 881 Score = 47.0 bits (110), Expect(3) = 3e-08 Identities = 25/44 (56%), Positives = 29/44 (65%) Frame = +1 Query: 553 GYDNVDKACKVL*DSIMQGYFSG*RTSCTLADGLC*EGKLDKMK 684 G + D+A VL S+ QGYF G +T LAD LC EGKLDKMK Sbjct: 435 GDGSTDEAYHVLKHSLEQGYFPGKKTFSILADALCQEGKLDKMK 478 Score = 33.1 bits (74), Expect(3) = 3e-08 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = +3 Query: 393 ENFLLIIPVTMSAAVYIFCKAGMVYVALDQY 485 E +L VTM+A + FCKAGMV VAL+ Y Sbjct: 381 EGQILPDKVTMNAVLCFFCKAGMVDVALELY 411 Score = 23.5 bits (49), Expect(3) = 3e-08 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 491 RSKSELSLNSLA*NYVINT 547 R++ LS NS+A NY+INT Sbjct: 414 RAEFGLSPNSMAYNYLINT 432 >ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like [Cucumis sativus] Length = 913 Score = 43.9 bits (102), Expect(2) = 8e-06 Identities = 22/41 (53%), Positives = 28/41 (68%) Frame = +1 Query: 562 NVDKACKVL*DSIMQGYFSG*RTSCTLADGLC*EGKLDKMK 684 + D+A ++L SI +GYF G +T LA LC EGKLDKMK Sbjct: 462 STDEAYRILKCSIYEGYFPGKKTFSILASALCREGKLDKMK 502 Score = 32.0 bits (71), Expect(2) = 8e-06 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +3 Query: 417 VTMSAAVYIFCKAGMVYVALDQY 485 VTM AA+ CKAGMV VAL+ Y Sbjct: 413 VTMDAAMCFLCKAGMVEVALELY 435