BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013516
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...   104   9e-21
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...   100   1e-19
ref|XP_002519842.1| pentatricopeptide repeat-containing protein,...   100   2e-19
ref|XP_002863397.1| pentatricopeptide repeat-containing protein ...    93   3e-17
ref|NP_199470.1| pentatricopeptide repeat-containing protein [Ar...    90   2e-16

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  104 bits (259), Expect = 9e-21
 Identities = 51/86 (59%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
 Frame = -3

Query: 253 LSNQLKPISLTLLTDTNSPS--LLSKPKSTWVNPSKPKRSVLSLHRHKKDTYTQNPKLND 80
           LS QLKP+S T+LT  +S    L+SKPKSTW+NP+KPK SVLSL RHK+  Y+ NP++ D
Sbjct: 75  LSEQLKPLSKTILTRDHSGQTHLVSKPKSTWINPTKPKPSVLSLQRHKRHNYSYNPQIRD 134

Query: 79  LRMFSKKLNACDPSHENEFLAVLEDI 2
           L++F+KK+N  + S E+EFLAVLE I
Sbjct: 135 LKLFAKKINESESSDESEFLAVLEQI 160


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
           gi|449521148|ref|XP_004167592.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  100 bits (250), Expect = 1e-19
 Identities = 50/86 (58%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
 Frame = -3

Query: 253 LSNQLKPISLTLLTDT--NSPSLLSKPKSTWVNPSKPKRSVLSLHRHKKDTYTQNPKLND 80
           LS QLK +S T L++   +   LLSKPKSTWVNP+KPKRSVLSL R K+ +Y+ NPK+ D
Sbjct: 61  LSEQLKNLSTTTLSNAPNDETRLLSKPKSTWVNPTKPKRSVLSLQRQKRSSYSYNPKMRD 120

Query: 79  LRMFSKKLNACDPSHENEFLAVLEDI 2
           L+ F+ KLNACD S +  F+A LE+I
Sbjct: 121 LKSFAHKLNACDSSDDASFIAALEEI 146


>ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540888|gb|EEF42446.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 677

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 53/89 (59%), Positives = 66/89 (74%), Gaps = 5/89 (5%)
 Frame = -3

Query: 253 LSNQLKPISLTLL-----TDTNSPSLLSKPKSTWVNPSKPKRSVLSLHRHKKDTYTQNPK 89
           LS+QLKP+S T L     T T   SLLSKP STWVNP+KPKRSVLSL R K+  Y+ NPK
Sbjct: 71  LSDQLKPLSSTTLSTTTTTTTTKHSLLSKPNSTWVNPTKPKRSVLSLQRQKRSPYSLNPK 130

Query: 88  LNDLRMFSKKLNACDPSHENEFLAVLEDI 2
           + +LR+F++KLN CD S E+ FL++LE I
Sbjct: 131 VKELRLFAQKLNDCD-STESSFLSLLEQI 158


>ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297309232|gb|EFH39656.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 711

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 44/84 (52%), Positives = 64/84 (76%)
 Frame = -3

Query: 253 LSNQLKPISLTLLTDTNSPSLLSKPKSTWVNPSKPKRSVLSLHRHKKDTYTQNPKLNDLR 74
           LS QLKP+S T L    +  +LSKPKS WVNP++PKRSVLSL R K+  Y+ NP++ DLR
Sbjct: 65  LSEQLKPLSATTLRQEQT-QILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLR 123

Query: 73  MFSKKLNACDPSHENEFLAVLEDI 2
            F++KLN+ + + ++EFL++L++I
Sbjct: 124 AFAQKLNSSNFTEKSEFLSLLDEI 147


>ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
           gi|8885599|dbj|BAA97529.1| unnamed protein product
           [Arabidopsis thaliana] gi|332008017|gb|AED95400.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 711

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 44/84 (52%), Positives = 62/84 (73%)
 Frame = -3

Query: 253 LSNQLKPISLTLLTDTNSPSLLSKPKSTWVNPSKPKRSVLSLHRHKKDTYTQNPKLNDLR 74
           LS QLKP+S T L    +  +LSKPKS WVNP++PKRSVLSL R K+  Y+ NP++ DLR
Sbjct: 65  LSEQLKPLSATTLRQEQT-QILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLR 123

Query: 73  MFSKKLNACDPSHENEFLAVLEDI 2
            F+ KLN+   + ++EFL++L++I
Sbjct: 124 AFALKLNSSIFTEKSEFLSLLDEI 147