BLASTX nr result
ID: Coptis24_contig00013469
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013469 (966 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002299587.1| predicted protein [Populus trichocarpa] gi|1... 258 2e-66 ref|XP_002521322.1| protein with unknown function [Ricinus commu... 255 1e-65 ref|XP_002273931.1| PREDICTED: transcription initiation factor T... 249 9e-64 ref|NP_175816.1| transcription initiation factor TFIID subunit D... 235 1e-59 gb|AFK39086.1| unknown [Medicago truncatula] gi|388516043|gb|AFK... 235 1e-59 >ref|XP_002299587.1| predicted protein [Populus trichocarpa] gi|118484348|gb|ABK94051.1| unknown [Populus trichocarpa] gi|222846845|gb|EEE84392.1| predicted protein [Populus trichocarpa] Length = 175 Score = 258 bits (659), Expect = 2e-66 Identities = 128/169 (75%), Positives = 143/169 (84%) Frame = +1 Query: 103 EGEENLPRVAKIMKSLLNSIGVQEYEPHVIHQFVELWYRFIVDALTDAQVYSEHAGKPTV 282 EGEE++PR AKI+KSLL S+GV++YEP V+HQF+ELWYR++VD LTDAQVYSEHA K + Sbjct: 3 EGEEDMPRDAKIVKSLLKSMGVEDYEPRVVHQFLELWYRYVVDVLTDAQVYSEHANKTAI 62 Query: 283 DCDDLKLAIQTKVNASFSQPPPREVLLELARIRNKNPLSKSIAGSGIPLPPEEDTLISPN 462 DCDD+KLAIQ+KVN SFSQPPPREVLLELAR RNK PL KSIAG GIPLPPE+DTLISPN Sbjct: 63 DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPGIPLPPEQDTLISPN 122 Query: 463 YQFAIPKKHRPQAAEETEEDDVGADENPPQEQKTDPQRQQTPLRVSFPL 609 YQ AIPKK QA EETEED+ AD N QEQKTDP Q TP RVSFPL Sbjct: 123 YQLAIPKKRTAQAIEETEEDEESADPNQSQEQKTDPP-QLTPQRVSFPL 170 >ref|XP_002521322.1| protein with unknown function [Ricinus communis] gi|223539400|gb|EEF40990.1| protein with unknown function [Ricinus communis] Length = 175 Score = 255 bits (652), Expect = 1e-65 Identities = 128/169 (75%), Positives = 142/169 (84%) Frame = +1 Query: 103 EGEENLPRVAKIMKSLLNSIGVQEYEPHVIHQFVELWYRFIVDALTDAQVYSEHAGKPTV 282 EG+ENLPR AKI+KSLL S+GV++YEP VIHQF+ELWYR++VD LTDAQVYSEHAGK + Sbjct: 3 EGDENLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKSAI 62 Query: 283 DCDDLKLAIQTKVNASFSQPPPREVLLELARIRNKNPLSKSIAGSGIPLPPEEDTLISPN 462 DCDD+KLAIQ+KVN SFSQPPPREVLLELAR RNK PL KSIAG G+PLPPE+DTLISPN Sbjct: 63 DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPGMPLPPEQDTLISPN 122 Query: 463 YQFAIPKKHRPQAAEETEEDDVGADENPPQEQKTDPQRQQTPLRVSFPL 609 YQ AIPKK QA EETEED+ AD N QE KTD Q TP RVSFPL Sbjct: 123 YQLAIPKKQSVQATEETEEDEESADPNSSQEPKTDVP-QGTPQRVSFPL 170 >ref|XP_002273931.1| PREDICTED: transcription initiation factor TFIID subunit 9B [Vitis vinifera] gi|297742999|emb|CBI35866.3| unnamed protein product [Vitis vinifera] Length = 177 Score = 249 bits (635), Expect = 9e-64 Identities = 123/173 (71%), Positives = 140/173 (80%) Frame = +1 Query: 103 EGEENLPRVAKIMKSLLNSIGVQEYEPHVIHQFVELWYRFIVDALTDAQVYSEHAGKPTV 282 EG+E+LPR AKI+KSLL S+GV +YEP VIHQF+ELWYR++VD LTDAQVYSEHA KP + Sbjct: 3 EGDEDLPRDAKIVKSLLKSMGVDDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHASKPAI 62 Query: 283 DCDDLKLAIQTKVNASFSQPPPREVLLELARIRNKNPLSKSIAGSGIPLPPEEDTLISPN 462 DCDD+KLAIQ+KVN SFSQPP REVLLELAR RNK PL KSIAG GIPLPPE+DTLISPN Sbjct: 63 DCDDVKLAIQSKVNFSFSQPPAREVLLELARNRNKIPLPKSIAGPGIPLPPEQDTLISPN 122 Query: 463 YQFAIPKKHRPQAAEETEEDDVGADENPPQEQKTDPQRQQTPLRVSFPLVGKR 621 YQ AIPKK QA EETEED+ GAD + ++ Q TP RVSFP+ KR Sbjct: 123 YQLAIPKKRTAQAVEETEEDEEGADPSHASQEGRTDLPQHTPQRVSFPIGAKR 175 >ref|NP_175816.1| transcription initiation factor TFIID subunit D7 [Arabidopsis thaliana] gi|4587557|gb|AAD25788.1|AC006577_24 Similar to gb|U21858 transcription initiation factor TFIID 31KD subunit (TAFII32) from Homo sapiens [Arabidopsis thaliana] gi|7638157|gb|AAF65406.1|AF238327_1 putative TATA binding protein associated factor 21kDa subunit [Arabidopsis thaliana] gi|21593471|gb|AAM65438.1| transcriptional activation factor TAFII32, putative [Arabidopsis thaliana] gi|39545926|gb|AAR28026.1| TAF9 [Arabidopsis thaliana] gi|98960943|gb|ABF58955.1| At1g54140 [Arabidopsis thaliana] gi|332194933|gb|AEE33054.1| transcription initiation factor TFIID subunit D7 [Arabidopsis thaliana] Length = 183 Score = 235 bits (600), Expect = 1e-59 Identities = 117/175 (66%), Positives = 137/175 (78%), Gaps = 6/175 (3%) Frame = +1 Query: 103 EGEENLPRVAKIMKSLLNSIGVQEYEPHVIHQFVELWYRFIVDALTDAQVYSEHAGKPTV 282 EGEE++PR AKI+KSLL S+GV++YEP VIHQF+ELWYR++V+ LTDAQVYSEHA KP + Sbjct: 4 EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63 Query: 283 DCDDLKLAIQTKVNASFSQPPPREVLLELARIRNKNPLSKSIAGSGIPLPPEEDTLISPN 462 DCDD+KLAIQ+KVN SFSQPPPREVLLELA RNK PL KSIAG G+PLPPE+DTL+SPN Sbjct: 64 DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123 Query: 463 YQFAIPKKHRPQAAEETEEDDVGAD------ENPPQEQKTDPQRQQTPLRVSFPL 609 YQ IPKK EETE+D+ D E Q+Q+T QTP RVSFPL Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQTPQRVSFPL 178 >gb|AFK39086.1| unknown [Medicago truncatula] gi|388516043|gb|AFK46083.1| unknown [Medicago truncatula] Length = 179 Score = 235 bits (599), Expect = 1e-59 Identities = 119/175 (68%), Positives = 143/175 (81%), Gaps = 1/175 (0%) Frame = +1 Query: 88 MVDKEEGEENLPRVAKIMKSLLNSIGVQEYEPHVIHQFVELWYRFIVDALTDAQVYSEHA 267 M D EE + N+PR AKIM+SLL S+GV+EYEP VI++F+ELWYR++VD LTDAQVYSEHA Sbjct: 1 MADNEE-DSNMPRDAKIMQSLLKSMGVEEYEPRVINKFLELWYRYVVDVLTDAQVYSEHA 59 Query: 268 GKPTVDCDDLKLAIQTKVNASFSQPPPREVLLELARIRNKNPLSKSIAGSGIPLPPEEDT 447 GKP +D DD+KLAIQ++VN SFSQPPPREVLLELA+ RNK PL KSIAG G PLPP++DT Sbjct: 60 GKPAIDVDDVKLAIQSQVNFSFSQPPPREVLLELAQNRNKIPLPKSIAGPGFPLPPDQDT 119 Query: 448 LISPNYQFAIPKKHRPQAAEETEEDDV-GADENPPQEQKTDPQRQQTPLRVSFPL 609 LI+PNYQFAIP K + EETE+++V AD NP QE+KTD + Q RVSFPL Sbjct: 120 LIAPNYQFAIPNKRSVEPMEETEDEEVPNADPNPSQEEKTDAE-QNPHQRVSFPL 173