BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013467
         (1531 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containi...   612   e-173
ref|XP_002512079.1| pentatricopeptide repeat-containing protein,...   596   e-168
ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|2...   580   e-163
ref|XP_003520114.1| PREDICTED: pentatricopeptide repeat-containi...   578   e-162
ref|XP_003614163.1| Pentatricopeptide repeat-containing protein ...   560   e-157

>ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290
            [Vitis vinifera]
          Length = 655

 Score =  612 bits (1579), Expect = e-173
 Identities = 299/395 (75%), Positives = 348/395 (88%)
 Frame = +3

Query: 3    VKGVEDKIVELERLMEGFGVLSKRVFYTNLINGYVKSGSLRSVSEIILRSLQEGDGHSVS 182
            +KG+E+KIVELE LM GFG  SK+V Y+ LIN YVKSG+L  VS  I RSL+E D    +
Sbjct: 261  LKGLEEKIVELEGLMRGFGFSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLREDDEQGPN 320

Query: 183  FGEETYCVVVRGFLQNGNIKDLAKLIIESQKLESASIGIDSSVGFRIVTACVNLGLLDKA 362
            F EETYC VV+GFLQNG+IKDLA LIIE+QKLE +SI +D S+G+ I++ACV+LG LDKA
Sbjct: 321  FSEETYCEVVKGFLQNGSIKDLASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKA 380

Query: 363  HSILDQMTAEGGFVGLGVYTSIVKAYCKEQRTSEAAQLVMDISASGLQLDAASYDTLIEA 542
            HSILD+M  +G  VGLGVY SI+KA+CKE RT+EAAQLV +IS+ GLQLDA SYD LIEA
Sbjct: 381  HSILDEMNVQGVSVGLGVYVSILKAFCKEHRTAEAAQLVTEISSLGLQLDAGSYDALIEA 440

Query: 543  SMSNQDFQSAFSLFRDMREAKIPDLQMSYLTIMTGLTENHRPELMAAFVDEVVEDPRIEV 722
            SMS+QDFQSAFSLFRDMREA++PD++ SYLT+MTGLTENHRPELMAAF+DE+VEDPR+EV
Sbjct: 441  SMSSQDFQSAFSLFRDMREARVPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEV 500

Query: 723  GTHDWNSIIHAFCKAGRLEDARRTLRRMSFLRFQTNGQTYLTLINGYVTAEKYFSVLILW 902
            GTHDWNSIIHAFCK GRLEDARRT RRM FL+F+ N QTYL+LINGY +AEKYFSVL+LW
Sbjct: 501  GTHDWNSIIHAFCKVGRLEDARRTFRRMIFLQFEPNDQTYLSLINGYASAEKYFSVLMLW 560

Query: 903  TEVRKQVSADSEKGLKLDHNLVDAFLYALIKGGFFDAVMQVVEKTQEMKIFVDKWRYKQA 1082
             EV++++S D EKG+K DHNLVDAFLYAL+KGGFFDAVMQVVEK+QEMKIFVDKWRYKQA
Sbjct: 561  NEVKRRISIDGEKGVKFDHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKIFVDKWRYKQA 620

Query: 1083 FMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLSA 1187
            FME HKKLKVAK+RKRNFRKMEAL+AFKNWAGL+A
Sbjct: 621  FMEVHKKLKVAKVRKRNFRKMEALIAFKNWAGLNA 655


>ref|XP_002512079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223549259|gb|EEF50748.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 650

 Score =  596 bits (1537), Expect = e-168
 Identities = 294/395 (74%), Positives = 346/395 (87%)
 Frame = +3

Query: 3    VKGVEDKIVELERLMEGFGVLSKRVFYTNLINGYVKSGSLRSVSEIILRSLQEGDGHSVS 182
            +KG++D+IVEL+ LMEGF VL+KR+FY+NLI GYVKSG+L SVS  I+ SL+E D  + +
Sbjct: 256  LKGLQDRIVELKSLMEGFSVLNKRLFYSNLIRGYVKSGNLESVSATIICSLREEDEKNYN 315

Query: 183  FGEETYCVVVRGFLQNGNIKDLAKLIIESQKLESASIGIDSSVGFRIVTACVNLGLLDKA 362
              EETYC VV+GFL++G++K LA LIIE++KLE  SI ID S+ F ++ ACVNLGL DKA
Sbjct: 316  INEETYCEVVKGFLKDGSLKGLANLIIEARKLEPDSIEIDKSISFGVINACVNLGLSDKA 375

Query: 363  HSILDQMTAEGGFVGLGVYTSIVKAYCKEQRTSEAAQLVMDISASGLQLDAASYDTLIEA 542
            HSILD+M A+GG VG GVY  I+KAYCKE RT+EA QLVM+IS  GLQLDA SYD LIEA
Sbjct: 376  HSILDEMDAKGGSVGFGVYVPILKAYCKEGRTAEATQLVMEISNLGLQLDAGSYDALIEA 435

Query: 543  SMSNQDFQSAFSLFRDMREAKIPDLQMSYLTIMTGLTENHRPELMAAFVDEVVEDPRIEV 722
            SM++QDFQSAF+LFRDMRE++ PDL+ SYLTIMTGL ENHRPELMAAF+DEVVEDPRIEV
Sbjct: 436  SMTSQDFQSAFTLFRDMRESRSPDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEV 495

Query: 723  GTHDWNSIIHAFCKAGRLEDARRTLRRMSFLRFQTNGQTYLTLINGYVTAEKYFSVLILW 902
             THDWNSIIHAFCKAGRLEDA+RT RRM FL+F+ N QTYL+LINGYVTAEKYFSVL+LW
Sbjct: 496  KTHDWNSIIHAFCKAGRLEDAKRTFRRMIFLQFEPNDQTYLSLINGYVTAEKYFSVLMLW 555

Query: 903  TEVRKQVSADSEKGLKLDHNLVDAFLYALIKGGFFDAVMQVVEKTQEMKIFVDKWRYKQA 1082
            +E++++VS D EK  K D NLVDAFLYAL+KGGFFDAVMQVVEK+QEMKIFVDKW+YKQA
Sbjct: 556  SEIKRRVSNDKEKSFKFDQNLVDAFLYALVKGGFFDAVMQVVEKSQEMKIFVDKWKYKQA 615

Query: 1083 FMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLSA 1187
            FME+HKKLKV+KLRKRNFRKMEAL+AFKNWAGL+A
Sbjct: 616  FMETHKKLKVSKLRKRNFRKMEALIAFKNWAGLNA 650


>ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|222851159|gb|EEE88706.1|
            predicted protein [Populus trichocarpa]
          Length = 654

 Score =  580 bits (1494), Expect = e-163
 Identities = 287/394 (72%), Positives = 338/394 (85%)
 Frame = +3

Query: 3    VKGVEDKIVELERLMEGFGVLSKRVFYTNLINGYVKSGSLRSVSEIILRSLQEGDGHSVS 182
            +KG +DKI+EL  LM GFG  +K++F++ LI GYVKSGS  +VSE ILRSL+E  G  ++
Sbjct: 261  LKGFQDKIIELNGLMSGFGFSNKKLFFSYLIRGYVKSGSFEAVSETILRSLREQGGLDLN 320

Query: 183  FGEETYCVVVRGFLQNGNIKDLAKLIIESQKLESASIGIDSSVGFRIVTACVNLGLLDKA 362
            F EETYC VV+GF+++G IK LA LIIE+QKLESA+I  D S GF I++ACVNL L DKA
Sbjct: 321  FSEETYCQVVKGFMKDGGIKGLANLIIEAQKLESATIAADKSTGFGIISACVNLRLSDKA 380

Query: 363  HSILDQMTAEGGFVGLGVYTSIVKAYCKEQRTSEAAQLVMDISASGLQLDAASYDTLIEA 542
            HSI+D+M A+GG VGLGV+  I+KAYCKE RT+EA QLVMDIS  GLQLD  SYD LIEA
Sbjct: 381  HSIVDEMDAQGGSVGLGVFLPILKAYCKEYRTAEATQLVMDISNKGLQLDEGSYDALIEA 440

Query: 543  SMSNQDFQSAFSLFRDMREAKIPDLQMSYLTIMTGLTENHRPELMAAFVDEVVEDPRIEV 722
            SM++QDFQSAF+LFRDMRE  I +L+ SYLTIMTGL E  RPELMAAF+DE+VEDPR+EV
Sbjct: 441  SMTSQDFQSAFTLFRDMREG-IAELKGSYLTIMTGLMEKQRPELMAAFLDEIVEDPRVEV 499

Query: 723  GTHDWNSIIHAFCKAGRLEDARRTLRRMSFLRFQTNGQTYLTLINGYVTAEKYFSVLILW 902
             THDWNSIIHAFCKAGRLEDA+RT RRM+FL+F+ N QTYL+LINGYVTAEKYF VL+LW
Sbjct: 500  KTHDWNSIIHAFCKAGRLEDAKRTFRRMTFLQFEPNDQTYLSLINGYVTAEKYFGVLMLW 559

Query: 903  TEVRKQVSADSEKGLKLDHNLVDAFLYALIKGGFFDAVMQVVEKTQEMKIFVDKWRYKQA 1082
             EV+++VS D EKG+K D +LVDAFLYA++KGGFFDAVMQVVEK+QEMKIFVDKWRYKQA
Sbjct: 560  NEVKRKVSPDKEKGIKFDQSLVDAFLYAMVKGGFFDAVMQVVEKSQEMKIFVDKWRYKQA 619

Query: 1083 FMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLS 1184
            FMESHKKLKV+KLRKRNFRKMEAL+AFKNW GL+
Sbjct: 620  FMESHKKLKVSKLRKRNFRKMEALIAFKNWVGLN 653


>ref|XP_003520114.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290-like
            [Glycine max]
          Length = 624

 Score =  578 bits (1491), Expect = e-162
 Identities = 284/396 (71%), Positives = 335/396 (84%), Gaps = 1/396 (0%)
 Frame = +3

Query: 3    VKGVEDKIVELERLMEGFGVLSKRVFYTNLINGYVKSGSLRSVSEIILRSLQEGDG-HSV 179
            +KG+E+KI ELE LM GFG L+K+ FY +LI+GY+KSG L SV   +++ L +G G    
Sbjct: 229  LKGLEEKIRELEVLMGGFGCLNKKWFYCSLISGYIKSGDLASVEATVVKCLGDGGGGKDW 288

Query: 180  SFGEETYCVVVRGFLQNGNIKDLAKLIIESQKLESASIGIDSSVGFRIVTACVNLGLLDK 359
             FG ET+C VV+ + Q GNIK LA LI+E+QKLE + I ID S+G+ IV ACVN+GL DK
Sbjct: 289  GFGVETFCEVVKAYFQKGNIKGLASLIVEAQKLEGSDIMIDKSIGYGIVNACVNIGLSDK 348

Query: 360  AHSILDQMTAEGGFVGLGVYTSIVKAYCKEQRTSEAAQLVMDISASGLQLDAASYDTLIE 539
            AHSILD+M A G  VGLGVY  I+KAYCKE RT+EA Q+VM+IS SGLQLD  +YD L+E
Sbjct: 349  AHSILDEMNALGASVGLGVYIPILKAYCKENRTAEATQMVMEISNSGLQLDVGTYDALVE 408

Query: 540  ASMSNQDFQSAFSLFRDMREAKIPDLQMSYLTIMTGLTENHRPELMAAFVDEVVEDPRIE 719
            A+M  QDFQSAFSLFRDMR+A+IPDL+ SYLTIMTGL ENHRPELMAAF+DEVVEDPRIE
Sbjct: 409  AAMCAQDFQSAFSLFRDMRDARIPDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIE 468

Query: 720  VGTHDWNSIIHAFCKAGRLEDARRTLRRMSFLRFQTNGQTYLTLINGYVTAEKYFSVLIL 899
            VGTHDWNSIIHAFCKAGRLEDARRT RRM FL+F+ N QTYL++INGYV AEKYF VL+L
Sbjct: 469  VGTHDWNSIIHAFCKAGRLEDARRTFRRMMFLQFEPNDQTYLSMINGYVLAEKYFLVLML 528

Query: 900  WTEVRKQVSADSEKGLKLDHNLVDAFLYALIKGGFFDAVMQVVEKTQEMKIFVDKWRYKQ 1079
            W EV++++S D +KG+K DHNLVDAFLYA++KGGFFDAVMQVVEK  EM++FVDKWRYKQ
Sbjct: 529  WNEVKRKLSLDGQKGIKFDHNLVDAFLYAMVKGGFFDAVMQVVEKAYEMRVFVDKWRYKQ 588

Query: 1080 AFMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLSA 1187
            AFME+HKKLKVAKLRKRNFRKMEAL+AFKNWAGL+A
Sbjct: 589  AFMETHKKLKVAKLRKRNFRKMEALIAFKNWAGLNA 624


>ref|XP_003614163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355515498|gb|AES97121.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 660

 Score =  560 bits (1444), Expect = e-157
 Identities = 280/398 (70%), Positives = 336/398 (84%), Gaps = 3/398 (0%)
 Frame = +3

Query: 3    VKGVEDKIVELERLMEGFGVL-SKRVFYTNLINGYVKSGSLRSVSEIILRSLQEGD--GH 173
            +KG++DKI EL+ LM GFG   + + FY+NLI+GYVKS +L SV   IL SL + D  G 
Sbjct: 263  LKGLQDKIDELKVLMVGFGYSKNNKCFYSNLISGYVKSANLVSVESTILSSLNDRDDEGE 322

Query: 174  SVSFGEETYCVVVRGFLQNGNIKDLAKLIIESQKLESASIGIDSSVGFRIVTACVNLGLL 353
              SF  +T+C+VV+ +L  GNIK LA LIIE+QKLES++I +D S+GF IV ACV++GL 
Sbjct: 323  VWSFDRDTFCLVVKEYLHKGNIKGLANLIIEAQKLESSNIKVDESIGFGIVNACVSIGLS 382

Query: 354  DKAHSILDQMTAEGGFVGLGVYTSIVKAYCKEQRTSEAAQLVMDISASGLQLDAASYDTL 533
            DKAHSILD+M A GG VGLGVY  I+KAYCKE RT+EA+ LV +IS+SGL+LD  +YD L
Sbjct: 383  DKAHSILDEMNALGGSVGLGVYVPILKAYCKENRTAEASLLVTEISSSGLKLDVETYDAL 442

Query: 534  IEASMSNQDFQSAFSLFRDMREAKIPDLQMSYLTIMTGLTENHRPELMAAFVDEVVEDPR 713
            IE SMS QDFQS FSLFRDMR A++ DL+ SYLTIMTGL ENHRPELMAAF+DEVVEDPR
Sbjct: 443  IETSMSGQDFQSVFSLFRDMRGARVLDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR 502

Query: 714  IEVGTHDWNSIIHAFCKAGRLEDARRTLRRMSFLRFQTNGQTYLTLINGYVTAEKYFSVL 893
            IEVGTHDWNSIIHAFCKAGRLEDARRT RRM+FL+F+ N QTYL+LINGYV+AEKYF V+
Sbjct: 503  IEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSLINGYVSAEKYFDVM 562

Query: 894  ILWTEVRKQVSADSEKGLKLDHNLVDAFLYALIKGGFFDAVMQVVEKTQEMKIFVDKWRY 1073
            +LW EV+++++ D  KG+K D NLVDAFLYA++KGGFFDAVMQVVEK++EMKIFVDKWRY
Sbjct: 563  MLWNEVKRKLAGDGPKGIKFDQNLVDAFLYAMVKGGFFDAVMQVVEKSKEMKIFVDKWRY 622

Query: 1074 KQAFMESHKKLKVAKLRKRNFRKMEALVAFKNWAGLSA 1187
            KQAFME+HKKLKVA+LRK+N RKMEAL+AFKNWAGL+A
Sbjct: 623  KQAFMETHKKLKVARLRKKNVRKMEALIAFKNWAGLNA 660