BLASTX nr result
ID: Coptis24_contig00013418
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013418 (745 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 99 4e-28 dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 99 4e-28 gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 93 5e-27 ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 110 5e-27 gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 97 3e-25 >dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] Length = 1072 Score = 99.4 bits (246), Expect(2) = 4e-28 Identities = 52/155 (33%), Positives = 82/155 (52%) Frame = +3 Query: 267 KVESWKNRFLSHAGRL*LIISVQASFHIY*AKTFILPQGVLIKVAQICAKFL*SGSQMGK 446 ++ SW ++ LS AGR LI SV + TF+LP+G + K+ +C+KFL +GS G+ Sbjct: 649 RLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGR 708 Query: 447 NMHQSSRENIQYPKMEGGLGIQDPIIWNRTAYCGLIYKLAGKDSGLWITWNWAEHIKEKN 626 + S + PK EGGLG + WN+T LI+ L +D+ LW W + + Sbjct: 709 KSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHAS 768 Query: 627 FWTMSVPRDCSWPWRCILNNRKTAMKLLRYSISTG 731 FW ++ + W W+ +LN R A K ++ + G Sbjct: 769 FWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNG 803 Score = 51.6 bits (122), Expect(2) = 4e-28 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 7/92 (7%) Frame = +1 Query: 1 LCFADDVLIFIQGYEDSIWGLKLILDDFS--RGYRSAAEPKQIYHQDGSHLGHIL----- 159 L FADDV+IF G S+ G+ LDDF+ G + + Q++ Q G L + Sbjct: 555 LMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF-QAGLDLSERITSAAY 613 Query: 160 GMQVVSPPVKYLGLPLVSARISIKDCLPLIEK 255 G + P++YLGLPL+ ++ I D PL+EK Sbjct: 614 GFPAGTFPIRYLGLPLMCRKLRIADYGPLLEK 645 >dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis thaliana] Length = 1072 Score = 99.4 bits (246), Expect(2) = 4e-28 Identities = 52/155 (33%), Positives = 82/155 (52%) Frame = +3 Query: 267 KVESWKNRFLSHAGRL*LIISVQASFHIY*AKTFILPQGVLIKVAQICAKFL*SGSQMGK 446 ++ SW ++ LS AGR LI SV + TF+LP+G + K+ +C+KFL +GS G+ Sbjct: 649 RLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGR 708 Query: 447 NMHQSSRENIQYPKMEGGLGIQDPIIWNRTAYCGLIYKLAGKDSGLWITWNWAEHIKEKN 626 + S + PK EGGLG + WN+T LI+ L +D+ LW W + + Sbjct: 709 KSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHAS 768 Query: 627 FWTMSVPRDCSWPWRCILNNRKTAMKLLRYSISTG 731 FW ++ + W W+ +LN R A K ++ + G Sbjct: 769 FWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNG 803 Score = 51.6 bits (122), Expect(2) = 4e-28 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 7/92 (7%) Frame = +1 Query: 1 LCFADDVLIFIQGYEDSIWGLKLILDDFS--RGYRSAAEPKQIYHQDGSHLGHIL----- 159 L FADDV+IF G S+ G+ LDDF+ G + + Q++ Q G L + Sbjct: 555 LMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF-QAGLDLSERITSAAY 613 Query: 160 GMQVVSPPVKYLGLPLVSARISIKDCLPLIEK 255 G + P++YLGLPL+ ++ I D PL+EK Sbjct: 614 GFPAGTFPIRYLGLPLMCRKLRIADYGPLLEK 645 >gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] Length = 1213 Score = 92.8 bits (229), Expect(2) = 5e-27 Identities = 50/155 (32%), Positives = 80/155 (51%) Frame = +3 Query: 267 KVESWKNRFLSHAGRL*LIISVQASFHIY*AKTFILPQGVLIKVAQICAKFL*SGSQMGK 446 + SW N+ LS AGR+ LI SV + TF+LP+G + ++ +C++FL SG+ Sbjct: 789 RFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQA 848 Query: 447 NMHQSSRENIQYPKMEGGLGIQDPIIWNRTAYCGLIYKLAGKDSGLWITWNWAEHIKEKN 626 + S + PK EGGLG++ + WN+T LI++L LW W H+ + Sbjct: 849 KGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGS 908 Query: 627 FWTMSVPRDCSWPWRCILNNRKTAMKLLRYSISTG 731 FW + + SW W+ +L+ R A + L + G Sbjct: 909 FWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNG 943 Score = 54.7 bits (130), Expect(2) = 5e-27 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 6/93 (6%) Frame = +1 Query: 1 LCFADDVLIFIQGYEDSIWGLKLILDDFSR--GYRSAAEPKQIY----HQDGSHLGHILG 162 L FADDV+IF G S+ G+ LDDF+ G + + +Y +Q S+ G Sbjct: 695 LMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANAAYG 754 Query: 163 MQVVSPPVKYLGLPLVSARISIKDCLPLIEKTT 261 + + P++YLGLPL++ ++ I + PL+EK T Sbjct: 755 FPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKIT 787 >ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1| predicted protein [Populus trichocarpa] Length = 517 Score = 110 bits (276), Expect(2) = 5e-27 Identities = 63/159 (39%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Frame = +3 Query: 267 KVESWKNRFLSHAGRL*LIISVQASFHIY*AKTFILPQGVLIKVAQICAKFL*SGSQMGK 446 KV W R LS+AGR+ LI SV S +Y A F+LP V+ V QI FL SGS M Sbjct: 83 KVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRT 142 Query: 447 NMHQSSRENIQYPKMEGGLGIQDPIIWNRTAYCGLIYKLAG-KDSGLWITWNWAEHIKEK 623 + + + + PK EGGLGI+ WN+ A I+ L D +W TW + ++ + Sbjct: 143 TGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGR 202 Query: 624 NFWTMSVPRDCSWPWRCILNNRKTAMKLLRYSISTGDQT 740 NFWT+ P++CSW W IL R A ++Y I G T Sbjct: 203 NFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTT 241 Score = 36.6 bits (83), Expect(2) = 5e-27 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = +1 Query: 151 HILGMQVVSPPVKYLGLPLVSARISIKDCLPLIEKTT 261 HILG + P+KYLG+PL+S+R+ C L+++ T Sbjct: 45 HILGFREGELPMKYLGVPLLSSRLKAIYCKGLVDRIT 81 >gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus] Length = 1214 Score = 97.4 bits (241), Expect(2) = 3e-25 Identities = 54/151 (35%), Positives = 77/151 (50%) Frame = +3 Query: 279 WKNRFLSHAGRL*LIISVQASFHIY*AKTFILPQGVLIKVAQICAKFL*SGSQMGKNMHQ 458 W + LS AGRL LI SV S + +FILP+ L + Q+C +FL + + Sbjct: 792 WATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIK 851 Query: 459 SSRENIQYPKMEGGLGIQDPIIWNRTAYCGLIYKLAGKDSGLWITWNWAEHIKEKNFWTM 638 S +N PK EGGLG+++ WN+T LI+ L + LW+ WN A ++ NFW Sbjct: 852 VSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNA 911 Query: 639 SVPRDCSWPWRCILNNRKTAMKLLRYSISTG 731 SW W+ IL R A + LR ++ G Sbjct: 912 EAASHHSWIWKAILGLRPLAKRFLRGAVGNG 942 Score = 43.9 bits (102), Expect(2) = 3e-25 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 10/95 (10%) Frame = +1 Query: 1 LCFADDVLIFIQGYEDSIWGLKLILDDFSR--GYRSAAEPKQIY--------HQDGSHLG 150 L FADD++IF G S+ G+K +L+ F G E +Y +D G Sbjct: 694 LAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTLAFG 753 Query: 151 HILGMQVVSPPVKYLGLPLVSARISIKDCLPLIEK 255 + G + P +YLGLPL+ ++ D LI+K Sbjct: 754 FVNG----TFPFRYLGLPLLHRKLRRSDYSQLIDK 784