BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013413
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   142   5e-32
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   142   5e-32
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   139   3e-31
ref|XP_002453315.1| hypothetical protein SORBIDRAFT_04g003760 [S...   139   4e-31
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              137   1e-30

>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  142 bits (357), Expect = 5e-32
 Identities = 65/101 (64%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
 Frame = -2

Query: 302  HSANKVESTSEASGLIKSCFFHDLNPYEDLVHSICSREVLVRSSRGLTEPGTLFKNLMTV 123
            +S++K++  S   GL+K CFFH L+PYE++VHSI +REV+VRSSRGLTEPGTLFKNLM +
Sbjct: 730  YSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAI 789

Query: 122  LRDVVLCYDGTVRNVCSNSIIQFSYEVESG-LNGHRFYPPG 3
            LRDVV+CYDGTVRNVCSNSIIQ  Y +++G +  +  +PPG
Sbjct: 790  LRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPG 830



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
 Frame = -3

Query: 514  PCFYSIW--FQKILFLKSNSMNDLNDRRVILYVNDWCCVKKYCKETAAYLVQNRLKRGSL 341
            P   S W   ++IL  K +  N+  DRRVILY+N+  C +KYC E AAY+V++ LK+ +L
Sbjct: 854  PSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTL 913

Query: 340  KDITVN 323
            KD  ++
Sbjct: 914  KDAAMD 919


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  142 bits (357), Expect = 5e-32
 Identities = 65/101 (64%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
 Frame = -2

Query: 302  HSANKVESTSEASGLIKSCFFHDLNPYEDLVHSICSREVLVRSSRGLTEPGTLFKNLMTV 123
            +S++K++  S   GL+K CFFH L+PYE++VHSI +REV+VRSSRGLTEPGTLFKNLM +
Sbjct: 760  YSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAI 819

Query: 122  LRDVVLCYDGTVRNVCSNSIIQFSYEVESG-LNGHRFYPPG 3
            LRDVV+CYDGTVRNVCSNSIIQ  Y +++G +  +  +PPG
Sbjct: 820  LRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPG 860



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
 Frame = -3

Query: 514  PCFYSIW--FQKILFLKSNSMNDLNDRRVILYVNDWCCVKKYCKETAAYLVQNRLKRGSL 341
            P   S W   ++IL  K +  N+  DRRVILY+N+  C +KYC E AAY+V++ LK+ +L
Sbjct: 884  PSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTL 943

Query: 340  KDITVN 323
            KD  ++
Sbjct: 944  KDAAMD 949


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 991

 Score =  139 bits (351), Expect = 3e-31
 Identities = 63/104 (60%), Positives = 81/104 (77%)
 Frame = -2

Query: 314  HTSDHSANKVESTSEASGLIKSCFFHDLNPYEDLVHSICSREVLVRSSRGLTEPGTLFKN 135
            H      + ++  S   GLI+SCFFH L+PYE++VHSI +REV+VRS+RGL+EPGTLFKN
Sbjct: 728  HFESKYPSDIDYPSAKHGLIQSCFFHGLDPYEEMVHSISAREVMVRSTRGLSEPGTLFKN 787

Query: 134  LMTVLRDVVLCYDGTVRNVCSNSIIQFSYEVESGLNGHRFYPPG 3
            LM +LRDVV+CYDGTVRNVCSNSIIQF Y +++G+     +P G
Sbjct: 788  LMAILRDVVICYDGTVRNVCSNSIIQFEYGMKAGIKAQSLFPAG 831


>ref|XP_002453315.1| hypothetical protein SORBIDRAFT_04g003760 [Sorghum bicolor]
           gi|241933146|gb|EES06291.1| hypothetical protein
           SORBIDRAFT_04g003760 [Sorghum bicolor]
          Length = 554

 Score =  139 bits (349), Expect = 4e-31
 Identities = 66/119 (55%), Positives = 87/119 (73%)
 Frame = -2

Query: 359 FEKRQFKRYYSQFIDHTSDHSANKVESTSEASGLIKSCFFHDLNPYEDLVHSICSREVLV 180
           + +R  +  +S F++    HSA   E + EA GL++S +FH LNPYE+LVH+IC+RE ++
Sbjct: 401 YSRRLVEDCFSSFVNK---HSAIGDEYSPEAFGLVQSSYFHGLNPYEELVHAICTRETMI 457

Query: 179 RSSRGLTEPGTLFKNLMTVLRDVVLCYDGTVRNVCSNSIIQFSYEVESGLNGHRFYPPG 3
           RSSRGL+EPGTLFKNLM +LRDVV+CYDGTVRN+CSNSIIQ  Y  +   +     PPG
Sbjct: 458 RSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDEADSSSAVPPG 516


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  137 bits (346), Expect = 1e-30
 Identities = 62/87 (71%), Positives = 75/87 (86%)
 Frame = -2

Query: 263  GLIKSCFFHDLNPYEDLVHSICSREVLVRSSRGLTEPGTLFKNLMTVLRDVVLCYDGTVR 84
            GLI+SCFFH L+PYE++VHSI +RE++VRSSRGL+EPGTLFKNLM +LRDVV+CYDGTVR
Sbjct: 803  GLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVR 862

Query: 83   NVCSNSIIQFSYEVESGLNGHRFYPPG 3
            NVCSNSIIQF Y V++      F+P G
Sbjct: 863  NVCSNSIIQFEYGVKARTKPQHFFPAG 889



 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
 Frame = -3

Query: 514  PCFYSIW--FQKILFLKSNSMNDLNDRRVILYVNDWCCVKKYCKETAAYLVQNRLKRGSL 341
            P   S W   ++IL  + N  NDL DRRVILY+ND  C +KYC+E AAYLV+N+LK+ SL
Sbjct: 913  PSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASL 972

Query: 340  KDITV 326
            KD  V
Sbjct: 973  KDTAV 977