BLASTX nr result

ID: Coptis24_contig00013412 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013412
         (505 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305110.1| predicted protein [Populus trichocarpa] gi|2...    42   3e-08
ref|XP_002509420.1| interferon-induced guanylate-binding protein...    42   4e-08
ref|XP_003542717.1| PREDICTED: uncharacterized protein LOC100808...    42   7e-08
ref|XP_003529353.1| PREDICTED: uncharacterized protein LOC100796...    40   2e-07
ref|XP_003541721.1| PREDICTED: uncharacterized protein LOC100776...    41   6e-07

>ref|XP_002305110.1| predicted protein [Populus trichocarpa] gi|222848074|gb|EEE85621.1|
           predicted protein [Populus trichocarpa]
          Length = 1070

 Score = 42.0 bits (97), Expect(2) = 3e-08
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
 Frame = -2

Query: 504 EVNKTKYLRRYENAIND*KALVE*MQLFGGEVH*LNGDRFLHGNSLWTGKENV------- 346
           E +K++Y++RY+ AIN+ K L +       ++    G      +SL    E+        
Sbjct: 539 EKDKSEYMKRYDEAINEKKKLADDYMRRINDLQSNRGSLDERCSSLVKALESAKQETSNW 598

Query: 345 ----TRFLSKQRA*EGQSHGEINTLNYRASATEVMLGAAREQ 232
                + LSKQ+A E Q+  EI  L  R+SA+E  L AA EQ
Sbjct: 599 KRKHDQVLSKQKADEEQAASEIAILKSRSSASEARLAAAHEQ 640



 Score = 40.4 bits (93), Expect(2) = 3e-08
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 9/53 (16%)
 Frame = -3

Query: 233 RTQSAQEEAAEWKWKFDLAAQEAKAA*SPSTK---------QLQEEIIKENVS 102
           +T+SA+E+AAEWK K+D+A +E KAA   +           QL+E+ ++E  S
Sbjct: 640 QTRSAEEDAAEWKRKYDIAVRETKAALEKAANVQERTNKETQLREDALREEFS 692


>ref|XP_002509420.1| interferon-induced guanylate-binding protein, putative [Ricinus
           communis] gi|223549319|gb|EEF50807.1| interferon-induced
           guanylate-binding protein, putative [Ricinus communis]
          Length = 1065

 Score = 42.4 bits (98), Expect(2) = 4e-08
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
 Frame = -2

Query: 504 EVNKTKYLRRYENAIND*KALVE*MQLFGGEVH*LNGDRFLHGN-------SLWTGKENV 346
           E +K++Y++RY  AIN+ K L +    +   +  +   R L          +L + K+ +
Sbjct: 533 EKHKSEYMQRYNEAINEKKKLADD---YMKRISDMQSSRSLLDERCSSLVKALESAKQEM 589

Query: 345 T-------RFLSKQRA*EGQSHGEINTLNYRASATEVMLGAAREQ 232
           +       + LSKQ+A E Q+  EI  L  R+SATE  L AA EQ
Sbjct: 590 SDWKRKHDQLLSKQKADEDQTSSEIAVLKSRSSATEARLAAAHEQ 634



 Score = 39.7 bits (91), Expect(2) = 4e-08
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = -3

Query: 233 RTQSAQEEAAEWKWKFDLAAQEAKAA 156
           +T+SAQEEAAEWK K+D+  +E KAA
Sbjct: 634 QTKSAQEEAAEWKRKYDITVRETKAA 659


>ref|XP_003542717.1| PREDICTED: uncharacterized protein LOC100808644 [Glycine max]
          Length = 1060

 Score = 42.0 bits (97), Expect(2) = 7e-08
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
 Frame = -2

Query: 504 EVNKTKYLRRYENAIND*KALVE*MQLFGGEVH*LNGDR----FLHGNSLWT-------- 361
           E  K+ Y++RYE+AIND K L   M  +   +  L  +R      + + L T        
Sbjct: 538 EGEKSNYIKRYEDAINDKKKL---MDEYKNRITDLQANRRSLDERYSSLLKTLDSTKQDS 594

Query: 360 --GKENVTRFLSKQRA*EGQSHGEINTLNYRASATEVMLGAAREQ 232
              K    + LS+Q+A E Q+  EI  L  R+ A E  L AA+EQ
Sbjct: 595 MDWKRKYEQVLSRQKAEEDQASSEIAALKSRSGAAEARLAAAKEQ 639



 Score = 39.3 bits (90), Expect(2) = 7e-08
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
 Frame = -3

Query: 239 ENRTQSAQEEAAEWKWKFDLAAQEAKAA*SPSTK---------QLQEEIIKENVS 102
           + + QSAQEEA EWK K+D+A +EA++A   +           QL+E+ ++E  S
Sbjct: 637 KEQAQSAQEEAEEWKRKYDIARREAQSALQKAANVQERTNKQTQLREDALREEFS 691


>ref|XP_003529353.1| PREDICTED: uncharacterized protein LOC100796442 [Glycine max]
          Length = 1060

 Score = 40.4 bits (93), Expect(2) = 2e-07
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
 Frame = -2

Query: 504 EVNKTKYLRRYENAIND*KALVE*MQLFGGEVH*LNGDR----FLHGNSLWT-------- 361
           E  K+ Y++RYE+AIND K L   M  +   +  L  +R      + + L T        
Sbjct: 538 EGEKSNYIKRYEDAINDKKKL---MDEYKNCITDLQANRRSLDERYSSLLKTLDSTKQES 594

Query: 360 --GKENVTRFLSKQRA*EGQSHGEINTLNYRASATEVMLGAAREQ 232
              K    + LS+Q+A E Q+  EI  L  R+ A E  L AA+EQ
Sbjct: 595 MDWKRKYEQVLSRQKAEEDQASSEIAALKSRSGAAEARLAAAKEQ 639



 Score = 39.3 bits (90), Expect(2) = 2e-07
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
 Frame = -3

Query: 239 ENRTQSAQEEAAEWKWKFDLAAQEAKAA*SPSTK---------QLQEEIIKENVS 102
           + + QSAQEEA EWK K+D+A +EA++A   +           QL+E+ ++E  S
Sbjct: 637 KEQAQSAQEEAEEWKRKYDIARREAQSALQKAANVQERTNKQTQLREDALREEFS 691


>ref|XP_003541721.1| PREDICTED: uncharacterized protein LOC100776402 [Glycine max]
          Length = 1059

 Score = 40.8 bits (94), Expect(2) = 6e-07
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 9/53 (16%)
 Frame = -3

Query: 233 RTQSAQEEAAEWKWKFDLAAQEAKAA*SPST---------KQLQEEIIKENVS 102
           ++QSAQEEA EWK K+++A +EAKAA   +           QL+E+ ++E  S
Sbjct: 631 QSQSAQEEAEEWKRKYEIAVREAKAALEKAAIVQEYTNKQSQLREDALREEFS 683



 Score = 37.4 bits (85), Expect(2) = 6e-07
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
 Frame = -2

Query: 504 EVNKTKYLRRYENAIND*KALVE*MQLFGGEVH*LNGDRFLHGNSL-----------WTG 358
           E  K++Y++RYE+AIND K L +       E+           +SL              
Sbjct: 530 ESEKSEYIKRYEDAINDKKQLTDEYMNRITELRASCRSLDERYSSLSKTLDSTKQESMDW 589

Query: 357 KENVTRFLSKQRA*EGQSHGEINTLNYRASATEVMLGAAREQ 232
           K    + LS+ ++ E Q+  EI  L   +SA E  L AAREQ
Sbjct: 590 KRKYEQVLSRHKSEEDQASSEIAALKSHSSAAEARLAAAREQ 631


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