BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013405
         (1393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003386122.1| PREDICTED: probable ATP-dependent RNA helica...    62   4e-07
ref|XP_003567963.1| PREDICTED: arginine/serine-rich-splicing fac...    59   2e-06
ref|NP_001042066.1| Os01g0155600 [Oryza sativa Japonica Group] g...    59   3e-06
gb|EEE53899.1| hypothetical protein OsJ_00434 [Oryza sativa Japo...    59   3e-06

>ref|XP_003386122.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 [Amphimedon
           queenslandica]
          Length = 804

 Score = 62.0 bits (149), Expect = 4e-07
 Identities = 37/76 (48%), Positives = 46/76 (60%)
 Frame = -1

Query: 511 RSDSRSPSPRGKAPMRSPSPRGNNRSPIRSPSPMAANRTSMRSPSPRERVPGSARSLSPR 332
           R  SRSP  R ++P RS SPR  +RSP RS SP   +R+  RS SPR+R      S SPR
Sbjct: 21  RGRSRSPRKRSRSPRRSRSPRKRSRSPRRSRSPRNKSRSPRRSRSPRKR------SRSPR 74

Query: 331 GKSRSPTRSDTYSPRR 284
            +S+SP RS +   RR
Sbjct: 75  DRSQSPRRSRSPQSRR 90



 Score = 57.8 bits (138), Expect = 7e-06
 Identities = 37/76 (48%), Positives = 44/76 (57%)
 Frame = -1

Query: 511 RSDSRSPSPRGKAPMRSPSPRGNNRSPIRSPSPMAANRTSMRSPSPRERVPGSARSLSPR 332
           R D+R    RG    RS SPR  +RSP RS SP   +R+  RS SPR +     RS SPR
Sbjct: 12  RRDNRRSGSRG----RSRSPRKRSRSPRRSRSPRKRSRSPRRSRSPRNKSRSPRRSRSPR 67

Query: 331 GKSRSPTRSDTYSPRR 284
            +SRSP R  + SPRR
Sbjct: 68  KRSRSP-RDRSQSPRR 82


>ref|XP_003567963.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
           [Brachypodium distachyon]
          Length = 319

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 8/80 (10%)
 Frame = -1

Query: 505 DSRSP--SPR-GKAPMRSPSPRGNNRSPIRSPSPMAANRTSMRSPSP-----RERVPGSA 350
           DSRSP  SPR  ++PM+SP    ++RSP++SP     +R+ +RSPSP     R   P  +
Sbjct: 205 DSRSPRRSPRDSRSPMKSPC---DSRSPVKSPRD---SRSPVRSPSPAKGRARSPTPNGS 258

Query: 349 RSLSPRGKSRSPTRSDTYSP 290
           RS +PRG SRSP R+D+ SP
Sbjct: 259 RSPAPRGNSRSPMRADSPSP 278


>ref|NP_001042066.1| Os01g0155600 [Oryza sativa Japonica Group]
           gi|54290784|dbj|BAD61423.1| putative splicing factor
           [Oryza sativa Japonica Group]
           gi|113531597|dbj|BAF03980.1| Os01g0155600 [Oryza sativa
           Japonica Group] gi|125524487|gb|EAY72601.1| hypothetical
           protein OsI_00466 [Oryza sativa Indica Group]
           gi|215765664|dbj|BAG87361.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 324

 Score = 58.9 bits (141), Expect = 3e-06
 Identities = 54/115 (46%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
 Frame = -1

Query: 604 CIKCRDRNHQERDYXXXXXXXXXXXXRDEKFRSDSRSPSP-RGKAPMRSPSPRGNNRSPI 428
           C +C DR H ERD               ++ RS SRSPSP RG++  RS S R  +RS  
Sbjct: 133 CYRCGDRGHIERDCRNSPKNL-------KRGRSYSRSPSPRRGRSRGRSYS-RSRSRSYS 184

Query: 427 RSPSPMAANRTSMRSPSPRE-RVP-GSAR-SLSPRGK---SRSPTRS--DTYSPR 287
           RS SP   +R   RS SPR+ R P GS R S SPRG    SRSP  S  DT SPR
Sbjct: 185 RSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRSPRGSPRDSRSPKGSPRDTQSPR 239


>gb|EEE53899.1| hypothetical protein OsJ_00434 [Oryza sativa Japonica Group]
          Length = 377

 Score = 58.9 bits (141), Expect = 3e-06
 Identities = 54/115 (46%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
 Frame = -1

Query: 604 CIKCRDRNHQERDYXXXXXXXXXXXXRDEKFRSDSRSPSP-RGKAPMRSPSPRGNNRSPI 428
           C +C DR H ERD               ++ RS SRSPSP RG++  RS S R  +RS  
Sbjct: 186 CYRCGDRGHIERDCRNSPKNL-------KRGRSYSRSPSPRRGRSRGRSYS-RSRSRSYS 237

Query: 427 RSPSPMAANRTSMRSPSPRE-RVP-GSAR-SLSPRGK---SRSPTRS--DTYSPR 287
           RS SP   +R   RS SPR+ R P GS R S SPRG    SRSP  S  DT SPR
Sbjct: 238 RSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRSPRGSPRDSRSPKGSPRDTQSPR 292