BLASTX nr result
ID: Coptis24_contig00013301
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013301 (1733 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methy... 525 e-146 ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferas... 510 e-142 ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methy... 507 e-141 ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|2... 493 e-137 ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B... 493 e-137 >ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis vinifera] gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera] Length = 525 Score = 525 bits (1352), Expect = e-146 Identities = 260/323 (80%), Positives = 291/323 (90%) Frame = +1 Query: 1 RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180 R+LV LKE NSLPLPK+EG+DR QARALATLYSHPVWMVRRW KYLGQEEA +LM WNN Sbjct: 195 RKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMMWNNS 254 Query: 181 DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360 +PSFSLRAN+ KGF+RADLV RL+ LKVPHELS +LD+FVRI TGMQ +IQA LLK+GLC Sbjct: 255 EPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIRTGMQIVIQAQLLKEGLC 314 Query: 361 SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540 SVQDES GLVVSVVDPQPGESI+DCCAAPGGKT+FMAS L G+GMV+A+DIN+GRLR++K Sbjct: 315 SVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQGMVHAIDINKGRLRIVK 374 Query: 541 ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720 ETAKL VD V++TVHADL FA+NN VKSDKVLLDAPCSGLGVLSKRADLRWNR LEDM Sbjct: 375 ETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLGVLSKRADLRWNRSLEDM 434 Query: 721 EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900 EQLK+LQDELLDAA+ LVKPGGVLVYSTCSIDPEENEERVAAFL+R PEF +D +YVP Sbjct: 435 EQLKNLQDELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAFLQRHPEFSIDPVGRYVP 494 Query: 901 SSFVTETGFFFSNPVEHALDGSF 969 S FVTE GF+FSNPV+HALDG+F Sbjct: 495 SDFVTEGGFYFSNPVKHALDGAF 517 >ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula] gi|355519174|gb|AET00798.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula] Length = 654 Score = 510 bits (1314), Expect = e-142 Identities = 249/323 (77%), Positives = 281/323 (86%) Frame = +1 Query: 1 RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180 R+LV LKEN +LPLPKVEG+DR QARALATLYSHPVW+VRRW KYLGQEEA +LM WNN Sbjct: 199 RKLVVLKENETLPLPKVEGDDRSQARALATLYSHPVWIVRRWTKYLGQEEAIKLMIWNNI 258 Query: 181 DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360 +PS+SLRAN AKGFSR DLV L LKVPH+LS +LDDFVRI TG+Q II AGL K+GLC Sbjct: 259 EPSYSLRANRAKGFSRDDLVTELNALKVPHKLSLHLDDFVRIKTGLQIIIHAGLFKEGLC 318 Query: 361 SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540 SVQDES GL+VS+VDPQPGE+IVDCCAAPGGKTL+MA+ L G+GMVYAVD+N GRLR+LK Sbjct: 319 SVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMAAHLSGQGMVYAVDVNSGRLRILK 378 Query: 541 ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720 ETAKLH+VD VV+TVHADLR + +KS+KVLLDAPCSGLGVLSKRADLRWNRKLEDM Sbjct: 379 ETAKLHQVDGVVTTVHADLRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDM 438 Query: 721 EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900 EQLK LQDELLDAAS LVKPGGVLVYSTCSIDPEEN++RVAAFL R +FH+D +YVP Sbjct: 439 EQLKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDDRVAAFLERHADFHIDPVDRYVP 498 Query: 901 SSFVTETGFFFSNPVEHALDGSF 969 FVT GF+ SNPV+H+LDGSF Sbjct: 499 PDFVTPKGFYSSNPVKHSLDGSF 521 >ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like [Glycine max] Length = 528 Score = 507 bits (1305), Expect = e-141 Identities = 246/323 (76%), Positives = 281/323 (86%) Frame = +1 Query: 1 RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180 R+LV LKE SLPLPKVEG+DR QARALATLYSHPVWMVRRW KYLGQEEA +LM WNN Sbjct: 198 RKLVVLKEKESLPLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNS 257 Query: 181 DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360 +PSFSLRAN A+GFSR DLV +L LKVPH+LS +LD+FVRI TG+Q IIQAGLLK GLC Sbjct: 258 EPSFSLRANRARGFSRDDLVTQLNALKVPHKLSPHLDEFVRIKTGLQIIIQAGLLKKGLC 317 Query: 361 SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540 SVQDES GLVVSVVDPQPGE+I+DCCAAPGGKTL+MAS L G+G V+A+D+N GRLR+LK Sbjct: 318 SVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGKVFAIDVNSGRLRILK 377 Query: 541 ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720 ETAKLH+VD V++ +HADLR ++ +KS+KVLLDAPCSGLGVLSKRADLRWN+ LEDM Sbjct: 378 ETAKLHQVDGVITAIHADLRTLPDSGQLKSNKVLLDAPCSGLGVLSKRADLRWNKNLEDM 437 Query: 721 EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900 EQLK LQDELLDAASKLVKPGGVLVYSTCSIDPEEN++RV AFL R +FH+D +YVP Sbjct: 438 EQLKELQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVVAFLARHSDFHIDPVDRYVP 497 Query: 901 SSFVTETGFFFSNPVEHALDGSF 969 F T +GFFFSNPV+H+LDGSF Sbjct: 498 PDFETSSGFFFSNPVKHSLDGSF 520 >ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa] Length = 527 Score = 493 bits (1270), Expect = e-137 Identities = 237/323 (73%), Positives = 285/323 (88%) Frame = +1 Query: 1 RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180 R+LV LKE+NSLPLPK+EG+DR QARALATLYSHPVWMVRRW K LGQE+A +LM WNN Sbjct: 197 RKLVLLKESNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKLLGQEKAIKLMMWNND 256 Query: 181 DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360 +PSFSLRAN+ KG +RADLV + LKVPHELS +LD FVR+ TG+Q +IQAGLLK GLC Sbjct: 257 NPSFSLRANSGKGVTRADLVMQFNMLKVPHELSLHLDHFVRVKTGLQIVIQAGLLKQGLC 316 Query: 361 SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540 +VQDES GL+VSVV+PQPG+SI+DCCAAPGGKTL+MAS++ G+GM+YA+DIN+GRLR++K Sbjct: 317 AVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYMASQMHGQGMLYAIDINKGRLRIVK 376 Query: 541 ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720 ETAKLH+VD V++T+ +DLR FAE+ +KSDKVLLDAPCSGLGVLSKRADLRWNR+LED+ Sbjct: 377 ETAKLHQVDGVITTIPSDLRTFAESYQLKSDKVLLDAPCSGLGVLSKRADLRWNRRLEDL 436 Query: 721 EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900 E+LK LQ+ELLDAAS LVKPGGVLVYSTCSIDPEENEERV AFL R PEF +D +YVP Sbjct: 437 EELKKLQEELLDAASILVKPGGVLVYSTCSIDPEENEERVDAFLLRHPEFRIDPVDRYVP 496 Query: 901 SSFVTETGFFFSNPVEHALDGSF 969 FVT+ GF+ S+PV+H++DG+F Sbjct: 497 PDFVTKRGFYSSDPVKHSMDGAF 519 >ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B [Arabidopsis thaliana] gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana] gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana] gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis thaliana] Length = 523 Score = 493 bits (1270), Expect = e-137 Identities = 238/323 (73%), Positives = 281/323 (86%) Frame = +1 Query: 1 RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180 R+LV LKE ++LPLPKVEG+DR QARALATL+SHPVWMVRRW+KYLG +EA +LM WNN Sbjct: 193 RKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLGLDEATKLMIWNNN 252 Query: 181 DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360 DP FSLRANT + +RADLV+RL +LKVPHELS +L++FVRI TG+Q ++QAGLLK+G+C Sbjct: 253 DPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIKTGLQTVVQAGLLKEGIC 312 Query: 361 SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540 SVQDES GL+VSVV PQPGE I+D CAAPGGKTLFMAS L+G+GM+YA+D+NEGRLR+L Sbjct: 313 SVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYAMDVNEGRLRILG 372 Query: 541 ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720 ETAK H+VD +++T+H+DLR+FAE N V+ DKVLLDAPCSGLGVLSKRADLRWNRKLEDM Sbjct: 373 ETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 432 Query: 721 EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900 +L LQDELLD+ASKLVK GGVLVYSTCSIDPEENE RV AFL R PEF +D +VP Sbjct: 433 LELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRHPEFTIDPVTSFVP 492 Query: 901 SSFVTETGFFFSNPVEHALDGSF 969 SSFVT GFF SNPV+H+LDG+F Sbjct: 493 SSFVTSQGFFLSNPVKHSLDGAF 515