BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013301
         (1733 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methy...   525   e-146
ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferas...   510   e-142
ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methy...   507   e-141
ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|2...   493   e-137
ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B...   493   e-137

>ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis
            vinifera] gi|296089930|emb|CBI39749.3| unnamed protein
            product [Vitis vinifera]
          Length = 525

 Score =  525 bits (1352), Expect = e-146
 Identities = 260/323 (80%), Positives = 291/323 (90%)
 Frame = +1

Query: 1    RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180
            R+LV LKE NSLPLPK+EG+DR QARALATLYSHPVWMVRRW KYLGQEEA +LM WNN 
Sbjct: 195  RKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMMWNNS 254

Query: 181  DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360
            +PSFSLRAN+ KGF+RADLV RL+ LKVPHELS +LD+FVRI TGMQ +IQA LLK+GLC
Sbjct: 255  EPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIRTGMQIVIQAQLLKEGLC 314

Query: 361  SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540
            SVQDES GLVVSVVDPQPGESI+DCCAAPGGKT+FMAS L G+GMV+A+DIN+GRLR++K
Sbjct: 315  SVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQGMVHAIDINKGRLRIVK 374

Query: 541  ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720
            ETAKL  VD V++TVHADL  FA+NN VKSDKVLLDAPCSGLGVLSKRADLRWNR LEDM
Sbjct: 375  ETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLGVLSKRADLRWNRSLEDM 434

Query: 721  EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900
            EQLK+LQDELLDAA+ LVKPGGVLVYSTCSIDPEENEERVAAFL+R PEF +D   +YVP
Sbjct: 435  EQLKNLQDELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAFLQRHPEFSIDPVGRYVP 494

Query: 901  SSFVTETGFFFSNPVEHALDGSF 969
            S FVTE GF+FSNPV+HALDG+F
Sbjct: 495  SDFVTEGGFYFSNPVKHALDGAF 517


>ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula]
            gi|355519174|gb|AET00798.1| Ribosomal RNA small subunit
            methyltransferase [Medicago truncatula]
          Length = 654

 Score =  510 bits (1314), Expect = e-142
 Identities = 249/323 (77%), Positives = 281/323 (86%)
 Frame = +1

Query: 1    RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180
            R+LV LKEN +LPLPKVEG+DR QARALATLYSHPVW+VRRW KYLGQEEA +LM WNN 
Sbjct: 199  RKLVVLKENETLPLPKVEGDDRSQARALATLYSHPVWIVRRWTKYLGQEEAIKLMIWNNI 258

Query: 181  DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360
            +PS+SLRAN AKGFSR DLV  L  LKVPH+LS +LDDFVRI TG+Q II AGL K+GLC
Sbjct: 259  EPSYSLRANRAKGFSRDDLVTELNALKVPHKLSLHLDDFVRIKTGLQIIIHAGLFKEGLC 318

Query: 361  SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540
            SVQDES GL+VS+VDPQPGE+IVDCCAAPGGKTL+MA+ L G+GMVYAVD+N GRLR+LK
Sbjct: 319  SVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMAAHLSGQGMVYAVDVNSGRLRILK 378

Query: 541  ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720
            ETAKLH+VD VV+TVHADLR   +   +KS+KVLLDAPCSGLGVLSKRADLRWNRKLEDM
Sbjct: 379  ETAKLHQVDGVVTTVHADLRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDM 438

Query: 721  EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900
            EQLK LQDELLDAAS LVKPGGVLVYSTCSIDPEEN++RVAAFL R  +FH+D   +YVP
Sbjct: 439  EQLKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDDRVAAFLERHADFHIDPVDRYVP 498

Query: 901  SSFVTETGFFFSNPVEHALDGSF 969
              FVT  GF+ SNPV+H+LDGSF
Sbjct: 499  PDFVTPKGFYSSNPVKHSLDGSF 521


>ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like
            [Glycine max]
          Length = 528

 Score =  507 bits (1305), Expect = e-141
 Identities = 246/323 (76%), Positives = 281/323 (86%)
 Frame = +1

Query: 1    RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180
            R+LV LKE  SLPLPKVEG+DR QARALATLYSHPVWMVRRW KYLGQEEA +LM WNN 
Sbjct: 198  RKLVVLKEKESLPLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNS 257

Query: 181  DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360
            +PSFSLRAN A+GFSR DLV +L  LKVPH+LS +LD+FVRI TG+Q IIQAGLLK GLC
Sbjct: 258  EPSFSLRANRARGFSRDDLVTQLNALKVPHKLSPHLDEFVRIKTGLQIIIQAGLLKKGLC 317

Query: 361  SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540
            SVQDES GLVVSVVDPQPGE+I+DCCAAPGGKTL+MAS L G+G V+A+D+N GRLR+LK
Sbjct: 318  SVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGKVFAIDVNSGRLRILK 377

Query: 541  ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720
            ETAKLH+VD V++ +HADLR   ++  +KS+KVLLDAPCSGLGVLSKRADLRWN+ LEDM
Sbjct: 378  ETAKLHQVDGVITAIHADLRTLPDSGQLKSNKVLLDAPCSGLGVLSKRADLRWNKNLEDM 437

Query: 721  EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900
            EQLK LQDELLDAASKLVKPGGVLVYSTCSIDPEEN++RV AFL R  +FH+D   +YVP
Sbjct: 438  EQLKELQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVVAFLARHSDFHIDPVDRYVP 497

Query: 901  SSFVTETGFFFSNPVEHALDGSF 969
              F T +GFFFSNPV+H+LDGSF
Sbjct: 498  PDFETSSGFFFSNPVKHSLDGSF 520


>ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|222847639|gb|EEE85186.1|
            predicted protein [Populus trichocarpa]
          Length = 527

 Score =  493 bits (1270), Expect = e-137
 Identities = 237/323 (73%), Positives = 285/323 (88%)
 Frame = +1

Query: 1    RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180
            R+LV LKE+NSLPLPK+EG+DR QARALATLYSHPVWMVRRW K LGQE+A +LM WNN 
Sbjct: 197  RKLVLLKESNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKLLGQEKAIKLMMWNND 256

Query: 181  DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360
            +PSFSLRAN+ KG +RADLV +   LKVPHELS +LD FVR+ TG+Q +IQAGLLK GLC
Sbjct: 257  NPSFSLRANSGKGVTRADLVMQFNMLKVPHELSLHLDHFVRVKTGLQIVIQAGLLKQGLC 316

Query: 361  SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540
            +VQDES GL+VSVV+PQPG+SI+DCCAAPGGKTL+MAS++ G+GM+YA+DIN+GRLR++K
Sbjct: 317  AVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYMASQMHGQGMLYAIDINKGRLRIVK 376

Query: 541  ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720
            ETAKLH+VD V++T+ +DLR FAE+  +KSDKVLLDAPCSGLGVLSKRADLRWNR+LED+
Sbjct: 377  ETAKLHQVDGVITTIPSDLRTFAESYQLKSDKVLLDAPCSGLGVLSKRADLRWNRRLEDL 436

Query: 721  EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900
            E+LK LQ+ELLDAAS LVKPGGVLVYSTCSIDPEENEERV AFL R PEF +D   +YVP
Sbjct: 437  EELKKLQEELLDAASILVKPGGVLVYSTCSIDPEENEERVDAFLLRHPEFRIDPVDRYVP 496

Query: 901  SSFVTETGFFFSNPVEHALDGSF 969
              FVT+ GF+ S+PV+H++DG+F
Sbjct: 497  PDFVTKRGFYSSDPVKHSMDGAF 519


>ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B [Arabidopsis
            thaliana] gi|18176252|gb|AAL60011.1| putative sun protein
            fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1|
            putative sun protein fmu [Arabidopsis thaliana]
            gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein
            [Arabidopsis thaliana] gi|332641785|gb|AEE75306.1|
            ribosomal RNA small subunit methyltransferase B
            [Arabidopsis thaliana]
          Length = 523

 Score =  493 bits (1270), Expect = e-137
 Identities = 238/323 (73%), Positives = 281/323 (86%)
 Frame = +1

Query: 1    RRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVWMVRRWIKYLGQEEAKRLMAWNNC 180
            R+LV LKE ++LPLPKVEG+DR QARALATL+SHPVWMVRRW+KYLG +EA +LM WNN 
Sbjct: 193  RKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLGLDEATKLMIWNNN 252

Query: 181  DPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLDDFVRITTGMQNIIQAGLLKDGLC 360
            DP FSLRANT +  +RADLV+RL +LKVPHELS +L++FVRI TG+Q ++QAGLLK+G+C
Sbjct: 253  DPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIKTGLQTVVQAGLLKEGIC 312

Query: 361  SVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMASRLRGRGMVYAVDINEGRLRVLK 540
            SVQDES GL+VSVV PQPGE I+D CAAPGGKTLFMAS L+G+GM+YA+D+NEGRLR+L 
Sbjct: 313  SVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYAMDVNEGRLRILG 372

Query: 541  ETAKLHEVDVVVSTVHADLRIFAENNVVKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 720
            ETAK H+VD +++T+H+DLR+FAE N V+ DKVLLDAPCSGLGVLSKRADLRWNRKLEDM
Sbjct: 373  ETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVLSKRADLRWNRKLEDM 432

Query: 721  EQLKSLQDELLDAASKLVKPGGVLVYSTCSIDPEENEERVAAFLRRQPEFHMDSAAKYVP 900
             +L  LQDELLD+ASKLVK GGVLVYSTCSIDPEENE RV AFL R PEF +D    +VP
Sbjct: 433  LELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRHPEFTIDPVTSFVP 492

Query: 901  SSFVTETGFFFSNPVEHALDGSF 969
            SSFVT  GFF SNPV+H+LDG+F
Sbjct: 493  SSFVTSQGFFLSNPVKHSLDGAF 515