BLASTX nr result
ID: Coptis24_contig00013228
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013228 (198 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI15409.3| unnamed protein product [Vitis vinifera] 59 5e-07 ref|XP_002273351.1| PREDICTED: transcription initiation factor T... 59 5e-07 ref|XP_002273382.1| PREDICTED: transcription initiation factor T... 59 5e-07 emb|CAN81006.1| hypothetical protein VITISV_011581 [Vitis vinifera] 59 5e-07 ref|XP_002321457.1| predicted protein [Populus trichocarpa] gi|2... 58 9e-07 >emb|CBI15409.3| unnamed protein product [Vitis vinifera] Length = 1245 Score = 58.5 bits (140), Expect = 5e-07 Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Frame = -1 Query: 198 VKLIRIDYWIEKAETGIHFDRNVLHACILIIR*GVHSVGFPV*TTLH-------SITVAQ 40 VKL+R+DYW+E+AETGIHF+ NVLH I R FP TVA Sbjct: 309 VKLVRVDYWVERAETGIHFEDNVLHTDNQIRR---ARCWFPCMDDTSQCCCYDLEFTVAH 365 Query: 39 NFVVVSNGTLLYQ 1 N V VS G+LLYQ Sbjct: 366 NLVAVSTGSLLYQ 378 >ref|XP_002273351.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Vitis vinifera] Length = 1325 Score = 58.5 bits (140), Expect = 5e-07 Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Frame = -1 Query: 198 VKLIRIDYWIEKAETGIHFDRNVLHACILIIR*GVHSVGFPV*TTLH-------SITVAQ 40 VKL+R+DYW+E+AETGIHF+ NVLH I R FP TVA Sbjct: 155 VKLVRVDYWVERAETGIHFEDNVLHTDNQIRR---ARCWFPCMDDTSQCCCYDLEFTVAH 211 Query: 39 NFVVVSNGTLLYQ 1 N V VS G+LLYQ Sbjct: 212 NLVAVSTGSLLYQ 224 >ref|XP_002273382.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Vitis vinifera] Length = 1345 Score = 58.5 bits (140), Expect = 5e-07 Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Frame = -1 Query: 198 VKLIRIDYWIEKAETGIHFDRNVLHACILIIR*GVHSVGFPV*TTLH-------SITVAQ 40 VKL+R+DYW+E+AETGIHF+ NVLH I R FP TVA Sbjct: 155 VKLVRVDYWVERAETGIHFEDNVLHTDNQIRR---ARCWFPCMDDTSQCCCYDLEFTVAH 211 Query: 39 NFVVVSNGTLLYQ 1 N V VS G+LLYQ Sbjct: 212 NLVAVSTGSLLYQ 224 >emb|CAN81006.1| hypothetical protein VITISV_011581 [Vitis vinifera] Length = 257 Score = 58.5 bits (140), Expect = 5e-07 Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Frame = -1 Query: 198 VKLIRIDYWIEKAETGIHFDRNVLHACILIIR*GVHSVGFPV*TTLH-------SITVAQ 40 VKL+R+DYW+E+AETGIHF+ NVLH I R FP TVA Sbjct: 155 VKLVRVDYWVERAETGIHFEDNVLHTDNQIRR---ARCWFPCMDDTSQCCCYDLEFTVAH 211 Query: 39 NFVVVSNGTLLYQ 1 N V VS G+LLYQ Sbjct: 212 NLVAVSTGSLLYQ 224 >ref|XP_002321457.1| predicted protein [Populus trichocarpa] gi|222868453|gb|EEF05584.1| predicted protein [Populus trichocarpa] Length = 1359 Score = 57.8 bits (138), Expect = 9e-07 Identities = 35/70 (50%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Frame = -1 Query: 198 VKLIRIDYWIEKAETGIHFDRNVLHACILIIR----*GVHSVGFPV*TTLHSITVAQNFV 31 VKL+RI+YW+EKAETGIHFD V+H I R GF TVA N V Sbjct: 153 VKLVRINYWVEKAETGIHFDNEVVHTDNQIRRARCWFPCMDEGFQRCCYDLEFTVAHNLV 212 Query: 30 VVSNGTLLYQ 1 VS G+LLYQ Sbjct: 213 AVSTGSLLYQ 222