BLASTX nr result

ID: Coptis24_contig00013221 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013221
         (981 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285110.1| PREDICTED: U-box domain-containing protein 2...   332   8e-89
emb|CAN74163.1| hypothetical protein VITISV_026443 [Vitis vinifera]   332   8e-89
ref|XP_002313124.1| predicted protein [Populus trichocarpa] gi|1...   309   8e-82
ref|XP_003607940.1| U-box domain-containing protein [Medicago tr...   307   2e-81
ref|XP_002330475.1| predicted protein [Populus trichocarpa] gi|2...   306   5e-81

>ref|XP_002285110.1| PREDICTED: U-box domain-containing protein 26 [Vitis vinifera]
          Length = 415

 Score =  332 bits (851), Expect = 8e-89
 Identities = 181/265 (68%), Positives = 204/265 (76%), Gaps = 2/265 (0%)
 Frame = -1

Query: 972 LLPIVFSTIEL--TELTHESLALVVMFSLTEHHCXXXXXXXXXXXXXXXLLTQPNIEVRV 799
           LLP++FS  E    EL HESLAL+VMF L+E  C               LL   +IEVRV
Sbjct: 151 LLPVIFSDSECDSAELKHESLALLVMFPLSESECAFVASQPDRVAHLVSLLFHASIEVRV 210

Query: 798 NSASLIEMVVSGTRSLEERAAIGSLDGLFEGITQILNYPFSYPRALKVGIKALFALCLVK 619
           NSA+LIE+VV+GTRSL+ RA I ++D +FEGIT ILNYP +YPRALKVGIKALFALCL K
Sbjct: 211 NSAALIEIVVAGTRSLDLRAQISNVDEIFEGITGILNYPLAYPRALKVGIKALFALCLAK 270

Query: 618 QNRSKAVSAGAAGALIDRLADFEKCDAERALATIELLCRTPMGCSAFAAHALTVPLLVKI 439
           Q+R KAV+AGA  ALIDRLADFEKCD ERALAT+ELLCR P GC+AFAAHALTVPLLV+ 
Sbjct: 271 QSRHKAVAAGAVTALIDRLADFEKCDVERALATVELLCRVPAGCAAFAAHALTVPLLVRK 330

Query: 438 ILKISDRATEYAAGALLSLCSGWEELQRDAVAAGVVTQLLLLVQSDCTEXXXXXXXXXXX 259
           ILK+SDRATEYAAGALLSLCS  E+ QR+AV+AGVVTQLLLLVQSDCTE           
Sbjct: 331 ILKVSDRATEYAAGALLSLCSAAEQSQREAVSAGVVTQLLLLVQSDCTERAKRKAQLLLK 390

Query: 258 XXRDSWPDDSVGNSDDFRGSDVVPF 184
             RDSWP+DSV NSDDF  SDVVPF
Sbjct: 391 LLRDSWPEDSVVNSDDFGCSDVVPF 415


>emb|CAN74163.1| hypothetical protein VITISV_026443 [Vitis vinifera]
          Length = 476

 Score =  332 bits (851), Expect = 8e-89
 Identities = 181/265 (68%), Positives = 204/265 (76%), Gaps = 2/265 (0%)
 Frame = -1

Query: 972  LLPIVFSTIEL--TELTHESLALVVMFSLTEHHCXXXXXXXXXXXXXXXLLTQPNIEVRV 799
            LLP++FS  E    EL HESLAL+VMF L+E  C               LL   +IEVRV
Sbjct: 212  LLPVIFSDSECDSAELKHESLALLVMFPLSESECAFVASQPDRVAHLVSLLFHASIEVRV 271

Query: 798  NSASLIEMVVSGTRSLEERAAIGSLDGLFEGITQILNYPFSYPRALKVGIKALFALCLVK 619
            NSA+LIE+VV+GTRSL+ RA I ++D +FEGIT ILNYP +YPRALKVGIKALFALCL K
Sbjct: 272  NSAALIEIVVAGTRSLDLRAQISNVDEIFEGITGILNYPLAYPRALKVGIKALFALCLAK 331

Query: 618  QNRSKAVSAGAAGALIDRLADFEKCDAERALATIELLCRTPMGCSAFAAHALTVPLLVKI 439
            Q+R KAV+AGA  ALIDRLADFEKCD ERALAT+ELLCR P GC+AFAAHALTVPLLV+ 
Sbjct: 332  QSRHKAVAAGAVTALIDRLADFEKCDVERALATVELLCRVPAGCAAFAAHALTVPLLVRK 391

Query: 438  ILKISDRATEYAAGALLSLCSGWEELQRDAVAAGVVTQLLLLVQSDCTEXXXXXXXXXXX 259
            ILK+SDRATEYAAGALLSLCS  E+ QR+AV+AGVVTQLLLLVQSDCTE           
Sbjct: 392  ILKVSDRATEYAAGALLSLCSAAEQSQREAVSAGVVTQLLLLVQSDCTERAKRKAQLLLK 451

Query: 258  XXRDSWPDDSVGNSDDFRGSDVVPF 184
              RDSWP+DSV NSDDF  SDVVPF
Sbjct: 452  LLRDSWPEDSVVNSDDFGCSDVVPF 476


>ref|XP_002313124.1| predicted protein [Populus trichocarpa] gi|118483121|gb|ABK93469.1|
           unknown [Populus trichocarpa]
           gi|222849532|gb|EEE87079.1| predicted protein [Populus
           trichocarpa]
          Length = 413

 Score =  309 bits (791), Expect = 8e-82
 Identities = 166/263 (63%), Positives = 199/263 (75%)
 Frame = -1

Query: 972 LLPIVFSTIELTELTHESLALVVMFSLTEHHCXXXXXXXXXXXXXXXLLTQPNIEVRVNS 793
           L+ +VFST + ++L+HESLA++V+F LTE  C               LL   +IEVRVNS
Sbjct: 151 LVNLVFSTSQSSDLSHESLAILVLFPLTEFDCVGISSEPERISYLANLLFHSSIEVRVNS 210

Query: 792 ASLIEMVVSGTRSLEERAAIGSLDGLFEGITQILNYPFSYPRALKVGIKALFALCLVKQN 613
           A+LIE V++GTRS + R  I + + +FEG+ +IL  P S PRALK+GIKALFALCLVKQ 
Sbjct: 211 AALIENVIAGTRSSDLRLQISNTEIIFEGVIEILKNPLSSPRALKIGIKALFALCLVKQT 270

Query: 612 RSKAVSAGAAGALIDRLADFEKCDAERALATIELLCRTPMGCSAFAAHALTVPLLVKIIL 433
           R KAV+AGAA  LIDRLADF+KCDAERALATIELLCR  +GC+AFAAHALTVPLLVK IL
Sbjct: 271 RHKAVTAGAAETLIDRLADFDKCDAERALATIELLCRIQVGCAAFAAHALTVPLLVKTIL 330

Query: 432 KISDRATEYAAGALLSLCSGWEELQRDAVAAGVVTQLLLLVQSDCTEXXXXXXXXXXXXX 253
           KISDRATEYAAGALL+LCS  E  Q++AV AG++TQLLLLVQSDCT+             
Sbjct: 331 KISDRATEYAAGALLALCSASELSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLL 390

Query: 252 RDSWPDDSVGNSDDFRGSDVVPF 184
           RD+WP+DSVGNSDDF  S+VVPF
Sbjct: 391 RDAWPEDSVGNSDDFLCSEVVPF 413


>ref|XP_003607940.1| U-box domain-containing protein [Medicago truncatula]
           gi|355508995|gb|AES90137.1| U-box domain-containing
           protein [Medicago truncatula]
          Length = 451

 Score =  307 bits (787), Expect = 2e-81
 Identities = 162/257 (63%), Positives = 194/257 (75%)
 Frame = -1

Query: 978 NFLLPIVFSTIELTELTHESLALVVMFSLTEHHCXXXXXXXXXXXXXXXLLTQPNIEVRV 799
           N +LPI+F+   L EL +ESLAL+V+F L+E  C               LL+  + +VRV
Sbjct: 149 NIILPILFNN-GLDELKNESLALIVLFPLSESECTSLASDSDKINYLTSLLSHDSFDVRV 207

Query: 798 NSASLIEMVVSGTRSLEERAAIGSLDGLFEGITQILNYPFSYPRALKVGIKALFALCLVK 619
           NSA+LIE++V+GT S E R  + ++DG+++G+ +IL  P SYPRALK+GIKALFALCLVK
Sbjct: 208 NSAALIEIIVAGTHSPEIRLQVSNVDGIYDGVVEILKNPISYPRALKIGIKALFALCLVK 267

Query: 618 QNRSKAVSAGAAGALIDRLADFEKCDAERALATIELLCRTPMGCSAFAAHALTVPLLVKI 439
           Q R +AVSAGA   LIDRLADFEKCDAERALAT+ELLCR P GC++FA HALTVP+LVKI
Sbjct: 268 QTRHRAVSAGAPVVLIDRLADFEKCDAERALATVELLCRVPAGCASFAGHALTVPMLVKI 327

Query: 438 ILKISDRATEYAAGALLSLCSGWEELQRDAVAAGVVTQLLLLVQSDCTEXXXXXXXXXXX 259
           ILKISDRATEYAAGAL++LCS  E  QR+AVAAGV+TQLLLLVQSDCTE           
Sbjct: 328 ILKISDRATEYAAGALMALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLK 387

Query: 258 XXRDSWPDDSVGNSDDF 208
             RDSWP DSVGNSDDF
Sbjct: 388 LLRDSWPQDSVGNSDDF 404


>ref|XP_002330475.1| predicted protein [Populus trichocarpa]
           gi|224123380|ref|XP_002330301.1| predicted protein
           [Populus trichocarpa] gi|222871336|gb|EEF08467.1|
           predicted protein [Populus trichocarpa]
           gi|222871887|gb|EEF09018.1| predicted protein [Populus
           trichocarpa]
          Length = 413

 Score =  306 bits (784), Expect = 5e-81
 Identities = 165/263 (62%), Positives = 195/263 (74%)
 Frame = -1

Query: 972 LLPIVFSTIELTELTHESLALVVMFSLTEHHCXXXXXXXXXXXXXXXLLTQPNIEVRVNS 793
           L+ +VFS+ +  EL+HESLA++VMF LTE  C               LL   +IEVRVNS
Sbjct: 151 LVNLVFSSSQSLELSHESLAILVMFPLTEFDCVAIASDPERISCLANLLFHSSIEVRVNS 210

Query: 792 ASLIEMVVSGTRSLEERAAIGSLDGLFEGITQILNYPFSYPRALKVGIKALFALCLVKQN 613
           A+LIE V++GTRS + R  I +++ +FEG+  IL  P S PRALK+GIK LFALCLVKQ 
Sbjct: 211 AALIENVIAGTRSSDLRLQISNMEIIFEGVIDILKNPLSSPRALKIGIKGLFALCLVKQT 270

Query: 612 RSKAVSAGAAGALIDRLADFEKCDAERALATIELLCRTPMGCSAFAAHALTVPLLVKIIL 433
           R KAVSAGAA  LIDRLAD +KCDAERALATIELLCR  +GC+AF AHALTVPLLVK IL
Sbjct: 271 RHKAVSAGAAETLIDRLADLDKCDAERALATIELLCRIQVGCAAFVAHALTVPLLVKTIL 330

Query: 432 KISDRATEYAAGALLSLCSGWEELQRDAVAAGVVTQLLLLVQSDCTEXXXXXXXXXXXXX 253
           KISDRATEYAAGALL+LCS  E+ Q++AV AG++TQLLLLVQSDCT+             
Sbjct: 331 KISDRATEYAAGALLALCSASEQSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLL 390

Query: 252 RDSWPDDSVGNSDDFRGSDVVPF 184
           RDSWP+DS GNSDDF  S+VVPF
Sbjct: 391 RDSWPEDSAGNSDDFVCSEVVPF 413


Top