BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013200
         (1589 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15412.3| unnamed protein product [Vitis vinifera]              751   0.0  
ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [...   745   0.0  
ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-...   730   0.0  
ref|NP_001234067.1| mismatch repair protein [Solanum lycopersicu...   726   0.0  
ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|2...   712   0.0  

>emb|CBI15412.3| unnamed protein product [Vitis vinifera]
          Length = 945

 Score =  751 bits (1938), Expect = 0.0
 Identities = 373/484 (77%), Positives = 419/484 (86%)
 Frame = +3

Query: 138  MEGNLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKT 317
            M+ + +D +KLPELKLDAKQAQGF+S FKTLP+DPRAVRFFDRRDYYTAHGENATFIAKT
Sbjct: 1    MDQDSQDHSKLPELKLDAKQAQGFLSFFKTLPRDPRAVRFFDRRDYYTAHGENATFIAKT 60

Query: 318  YYHTTTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSG 497
            YYHTTTALRQL             KNMFETIAR+LLLERTDHTLELYEGSGSNWRL KSG
Sbjct: 61   YYHTTTALRQLGSGSDGISSVSVSKNMFETIARNLLLERTDHTLELYEGSGSNWRLVKSG 120

Query: 498  TPGNLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQ 677
            TPGNLGSFED+LFANNEMQDSPV+VAL P FREN CT+GLGF+DLT+RV+GLAEFLDDSQ
Sbjct: 121  TPGNLGSFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVDLTRRVLGLAEFLDDSQ 180

Query: 678  FTNVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLS 857
            FTNVES LVALGC+ECL+P ES KS E++ L +ALSRCGV++TERK+TEFK+RDLVQDL 
Sbjct: 181  FTNVESALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTERKRTEFKARDLVQDLG 240

Query: 858  RLVKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSAA 1037
            RLVKGSIEPVRDLVS                    DE NYGN+TIQRYNLD YMRLDSAA
Sbjct: 241  RLVKGSIEPVRDLVSGFELAPGALGLLLSYAELLADESNYGNFTIQRYNLDSYMRLDSAA 300

Query: 1038 MRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQAF 1217
            +RALNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPL+D+ EIN R D+VQAF
Sbjct: 301  VRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDVNEINCRQDLVQAF 360

Query: 1218 VEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDGQ 1397
            VEDT LRQDLRQHLKRISDIERL+  LEKRRA LQH+VKLYQSSIRLP IK+ALG+YDGQ
Sbjct: 361  VEDTALRQDLRQHLKRISDIERLLRTLEKRRASLQHVVKLYQSSIRLPYIKSALGQYDGQ 420

Query: 1398 FLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDER 1577
            F  L+KE+YLDPLE WTDD+HLNRFI LVEA+VDL++LENGEYMISSGYD+ LA+LK+++
Sbjct: 421  FSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAVDLNELENGEYMISSGYDAKLASLKNDQ 480

Query: 1578 DAVE 1589
            + +E
Sbjct: 481  ETLE 484


>ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis]
            gi|223549157|gb|EEF50646.1| DNA mismatch repair protein
            MSH2, putative [Ricinus communis]
          Length = 936

 Score =  745 bits (1924), Expect = 0.0
 Identities = 370/480 (77%), Positives = 413/480 (86%)
 Frame = +3

Query: 150  LEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYHT 329
            +++ NKLPELKLDAKQAQGF+S FKTLP DPRAVR FDRRDYYT+HGENATFIAKTYYHT
Sbjct: 1    MDEDNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTSHGENATFIAKTYYHT 60

Query: 330  TTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPGN 509
            TTALRQL             KNMFETIARDLLLERTDHTLELYEGSGSNWRL KSGTPGN
Sbjct: 61   TTALRQLGSGPDGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGN 120

Query: 510  LGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTNV 689
            LGSFED+LFANNEMQDSP V A+ P FREN C+IGLG++DLTKR++GLAEFLDDS FTN+
Sbjct: 121  LGSFEDVLFANNEMQDSPAVAAVIPNFRENGCSIGLGYVDLTKRILGLAEFLDDSHFTNL 180

Query: 690  ESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLSRLVK 869
            ES LVALGCKECL+P+ESGKS+E + L +AL+RCGV++TERKK EFK+RDLV+DL RLVK
Sbjct: 181  ESALVALGCKECLLPIESGKSIECRTLHDALTRCGVMLTERKKNEFKTRDLVEDLGRLVK 240

Query: 870  GSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSAAMRAL 1049
            GSIEPVRDLVS                    DE NYGNYTI++YNLD YMRLDSAAMRAL
Sbjct: 241  GSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYTIRKYNLDSYMRLDSAAMRAL 300

Query: 1050 NVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQAFVEDT 1229
            NVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPLLD+ EIN+RLD+VQAFVEDT
Sbjct: 301  NVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAFVEDT 360

Query: 1230 ELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDGQFLPL 1409
             LRQDLRQHLKRISDIERL+HNLEKRRAGLQHIVKLYQSSIRLP I+ AL +YDGQF  L
Sbjct: 361  ALRQDLRQHLKRISDIERLVHNLEKRRAGLQHIVKLYQSSIRLPYIRGALDKYDGQFSSL 420

Query: 1410 LKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDERDAVE 1589
            +KERYLDPLE  TDD+HLN+FIALVE SVDLDQL+NGEY+IS  YD  L+ALKDE++++E
Sbjct: 421  IKERYLDPLESLTDDDHLNKFIALVETSVDLDQLDNGEYLISPSYDPALSALKDEQESLE 480


>ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max]
          Length = 942

 Score =  730 bits (1884), Expect = 0.0
 Identities = 365/485 (75%), Positives = 411/485 (84%), Gaps = 1/485 (0%)
 Frame = +3

Query: 138  MEGNLED-QNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAK 314
            M  N +D  NKLPELKLD+KQAQGF+S FKTLP DPRAVRFFDRRDYYTAHGENATFIAK
Sbjct: 1    MAENFDDLNNKLPELKLDSKQAQGFLSFFKTLPDDPRAVRFFDRRDYYTAHGENATFIAK 60

Query: 315  TYYHTTTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKS 494
            TYYHTTTA+RQL             +NMFETIARDLLLERTDHTLELYEGSGSNWRL KS
Sbjct: 61   TYYHTTTAMRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKS 120

Query: 495  GTPGNLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDS 674
            GTPGN+GSFED+LFAN+EMQDSPVVVAL   +REN CTIGLGF+DLTKRV+G+AEFLDDS
Sbjct: 121  GTPGNIGSFEDVLFANSEMQDSPVVVALSLNYRENGCTIGLGFVDLTKRVLGMAEFLDDS 180

Query: 675  QFTNVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDL 854
             FTNVES  VALGCKEC++P+ESGKS E++ L + L++CGV++TE+KK+EFK+RDLVQDL
Sbjct: 181  HFTNVESAFVALGCKECILPIESGKSTENRMLCDVLTKCGVMLTEKKKSEFKTRDLVQDL 240

Query: 855  SRLVKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSA 1034
             RLVKG IEPVRDLVS                    DE NY NYT++ YNLD YMRLDSA
Sbjct: 241  GRLVKGPIEPVRDLVSGFEFAPGALGALLSYAELLADESNYENYTLRSYNLDSYMRLDSA 300

Query: 1035 AMRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQA 1214
            AMRALNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPL+D+ EIN+RLD+VQA
Sbjct: 301  AMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHVWLKQPLVDVKEINSRLDIVQA 360

Query: 1215 FVEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDG 1394
            FVEDT LRQDLRQHLKRISDIERLMHN++KRRAGLQHIVKLYQSSIRLP IK+AL RYDG
Sbjct: 361  FVEDTALRQDLRQHLKRISDIERLMHNIQKRRAGLQHIVKLYQSSIRLPYIKSALERYDG 420

Query: 1395 QFLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDE 1574
            QF  +++ RYL+P+E WTDDEHLN+FI LVEASVDLDQLEN EYMIS  YDS LA LKD+
Sbjct: 421  QFSTMMRSRYLEPIELWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSILANLKDQ 480

Query: 1575 RDAVE 1589
            ++ +E
Sbjct: 481  QELLE 485


>ref|NP_001234067.1| mismatch repair protein [Solanum lycopersicum]
            gi|296034481|gb|ADG85112.1| mismatch repair protein
            [Solanum lycopersicum]
          Length = 943

 Score =  726 bits (1875), Expect = 0.0
 Identities = 358/484 (73%), Positives = 407/484 (84%)
 Frame = +3

Query: 138  MEGNLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKT 317
            M+ N E Q KLPELKLDA+QAQGF+S FKTLPKD RAVR FDRRDYYTAHG++ATFIAKT
Sbjct: 1    MDENFEKQGKLPELKLDARQAQGFLSFFKTLPKDVRAVRLFDRRDYYTAHGDDATFIAKT 60

Query: 318  YYHTTTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSG 497
            YYHTTTALRQL             +NMFETIARD+LLER D TLELYEGSGSNW+L KSG
Sbjct: 61   YYHTTTALRQLGNGVGALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWKLVKSG 120

Query: 498  TPGNLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQ 677
            TPGN GSFEDILFANNEMQDSPV+VAL P F +N CT+GLG++D+TKRV+GLAEFLDDS 
Sbjct: 121  TPGNFGSFEDILFANNEMQDSPVIVALAPKFDQNGCTVGLGYVDITKRVLGLAEFLDDSH 180

Query: 678  FTNVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLS 857
            FTN+ES LVALGC+ECLVP E+GKS ES+ L +A+SRCGV+VTERKKTEFK RDLVQDL 
Sbjct: 181  FTNLESALVALGCRECLVPTETGKSSESRPLYDAISRCGVMVTERKKTEFKGRDLVQDLG 240

Query: 858  RLVKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSAA 1037
            RLVKGS+EPVRDLVS+                   D+ NYGNYT+++YNLD YMRLDSAA
Sbjct: 241  RLVKGSVEPVRDLVSSFECAAGALGCILSYAELLADDSNYGNYTVKQYNLDSYMRLDSAA 300

Query: 1038 MRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQAF 1217
            MRALNV+ESK+DANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPLLD+ EIN RLD+VQAF
Sbjct: 301  MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAF 360

Query: 1218 VEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDGQ 1397
            VED  LRQDLRQHLKRISDIERL HNLE++RA L H+VKLYQS IR+P IK+ L RYDGQ
Sbjct: 361  VEDAALRQDLRQHLKRISDIERLTHNLERKRASLLHVVKLYQSGIRIPYIKSVLERYDGQ 420

Query: 1398 FLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDER 1577
            F PL++ERY+D LE W+DD HLN+FIALVE +VDLDQLENGEYMISS YD NL+ALKDE+
Sbjct: 421  FAPLIRERYIDSLEKWSDDNHLNKFIALVETAVDLDQLENGEYMISSAYDPNLSALKDEQ 480

Query: 1578 DAVE 1589
            + +E
Sbjct: 481  ETLE 484


>ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1|
            predicted protein [Populus trichocarpa]
          Length = 944

 Score =  712 bits (1837), Expect = 0.0
 Identities = 357/481 (74%), Positives = 399/481 (82%)
 Frame = +3

Query: 147  NLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYH 326
            N E+QNKLPELKLDAKQAQGF+S FKTLP DPRAVR FDRRDYYT H ENATFIAKTYYH
Sbjct: 6    NFEEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTVHAENATFIAKTYYH 65

Query: 327  TTTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPG 506
            TTTALRQL             KNMFETIARDLLLERTDHTLELYEGSGSNW+L KSGTPG
Sbjct: 66   TTTALRQLGSGSNGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWKLVKSGTPG 125

Query: 507  NLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTN 686
            NLGSFED+LFANN+MQDSPVVVAL   FRE  CT+GL ++DLTKRV+GLAEFLDDS FTN
Sbjct: 126  NLGSFEDVLFANNDMQDSPVVVALLLNFREKGCTVGLSYVDLTKRVLGLAEFLDDSHFTN 185

Query: 687  VESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLSRLV 866
            VES LVAL CKECL+P+ESGKS + + L + L++CGV++TERKK EFK+RDLVQDL RLV
Sbjct: 186  VESALVALSCKECLLPMESGKSNDCRTLHDVLTKCGVMLTERKKNEFKTRDLVQDLGRLV 245

Query: 867  KGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSAAMRA 1046
            KG +EPVRDLVS                    DE NYGNY I++YNLD YMRLDSAA RA
Sbjct: 246  KGPLEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYRIRKYNLDSYMRLDSAATRA 305

Query: 1047 LNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQAFVED 1226
            LNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPLL++  IN+RLD+VQAFV+D
Sbjct: 306  LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLEVDAINSRLDLVQAFVDD 365

Query: 1227 TELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDGQFLP 1406
            T LRQDLRQHLKRISDIERLMH +EK RAGL HIVKLYQS IRLP IK AL RYDGQF  
Sbjct: 366  TGLRQDLRQHLKRISDIERLMHIVEKGRAGLHHIVKLYQSIIRLPYIKGALERYDGQFSS 425

Query: 1407 LLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDERDAV 1586
            L+KE+YL+ LE WTDD HLN+FIALVE +VDLDQL+NGEYMIS GY++ L ALK E++++
Sbjct: 426  LIKEKYLESLEVWTDDNHLNKFIALVETAVDLDQLDNGEYMISPGYEAALGALKAEQESL 485

Query: 1587 E 1589
            E
Sbjct: 486  E 486