BLASTX nr result
ID: Coptis24_contig00013200
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013200 (1589 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI15412.3| unnamed protein product [Vitis vinifera] 751 0.0 ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [... 745 0.0 ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-... 730 0.0 ref|NP_001234067.1| mismatch repair protein [Solanum lycopersicu... 726 0.0 ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|2... 712 0.0 >emb|CBI15412.3| unnamed protein product [Vitis vinifera] Length = 945 Score = 751 bits (1938), Expect = 0.0 Identities = 373/484 (77%), Positives = 419/484 (86%) Frame = +3 Query: 138 MEGNLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKT 317 M+ + +D +KLPELKLDAKQAQGF+S FKTLP+DPRAVRFFDRRDYYTAHGENATFIAKT Sbjct: 1 MDQDSQDHSKLPELKLDAKQAQGFLSFFKTLPRDPRAVRFFDRRDYYTAHGENATFIAKT 60 Query: 318 YYHTTTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSG 497 YYHTTTALRQL KNMFETIAR+LLLERTDHTLELYEGSGSNWRL KSG Sbjct: 61 YYHTTTALRQLGSGSDGISSVSVSKNMFETIARNLLLERTDHTLELYEGSGSNWRLVKSG 120 Query: 498 TPGNLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQ 677 TPGNLGSFED+LFANNEMQDSPV+VAL P FREN CT+GLGF+DLT+RV+GLAEFLDDSQ Sbjct: 121 TPGNLGSFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVDLTRRVLGLAEFLDDSQ 180 Query: 678 FTNVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLS 857 FTNVES LVALGC+ECL+P ES KS E++ L +ALSRCGV++TERK+TEFK+RDLVQDL Sbjct: 181 FTNVESALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTERKRTEFKARDLVQDLG 240 Query: 858 RLVKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSAA 1037 RLVKGSIEPVRDLVS DE NYGN+TIQRYNLD YMRLDSAA Sbjct: 241 RLVKGSIEPVRDLVSGFELAPGALGLLLSYAELLADESNYGNFTIQRYNLDSYMRLDSAA 300 Query: 1038 MRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQAF 1217 +RALNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPL+D+ EIN R D+VQAF Sbjct: 301 VRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDVNEINCRQDLVQAF 360 Query: 1218 VEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDGQ 1397 VEDT LRQDLRQHLKRISDIERL+ LEKRRA LQH+VKLYQSSIRLP IK+ALG+YDGQ Sbjct: 361 VEDTALRQDLRQHLKRISDIERLLRTLEKRRASLQHVVKLYQSSIRLPYIKSALGQYDGQ 420 Query: 1398 FLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDER 1577 F L+KE+YLDPLE WTDD+HLNRFI LVEA+VDL++LENGEYMISSGYD+ LA+LK+++ Sbjct: 421 FSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAVDLNELENGEYMISSGYDAKLASLKNDQ 480 Query: 1578 DAVE 1589 + +E Sbjct: 481 ETLE 484 >ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] gi|223549157|gb|EEF50646.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] Length = 936 Score = 745 bits (1924), Expect = 0.0 Identities = 370/480 (77%), Positives = 413/480 (86%) Frame = +3 Query: 150 LEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYHT 329 +++ NKLPELKLDAKQAQGF+S FKTLP DPRAVR FDRRDYYT+HGENATFIAKTYYHT Sbjct: 1 MDEDNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTSHGENATFIAKTYYHT 60 Query: 330 TTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPGN 509 TTALRQL KNMFETIARDLLLERTDHTLELYEGSGSNWRL KSGTPGN Sbjct: 61 TTALRQLGSGPDGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGN 120 Query: 510 LGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTNV 689 LGSFED+LFANNEMQDSP V A+ P FREN C+IGLG++DLTKR++GLAEFLDDS FTN+ Sbjct: 121 LGSFEDVLFANNEMQDSPAVAAVIPNFRENGCSIGLGYVDLTKRILGLAEFLDDSHFTNL 180 Query: 690 ESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLSRLVK 869 ES LVALGCKECL+P+ESGKS+E + L +AL+RCGV++TERKK EFK+RDLV+DL RLVK Sbjct: 181 ESALVALGCKECLLPIESGKSIECRTLHDALTRCGVMLTERKKNEFKTRDLVEDLGRLVK 240 Query: 870 GSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSAAMRAL 1049 GSIEPVRDLVS DE NYGNYTI++YNLD YMRLDSAAMRAL Sbjct: 241 GSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYTIRKYNLDSYMRLDSAAMRAL 300 Query: 1050 NVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQAFVEDT 1229 NVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPLLD+ EIN+RLD+VQAFVEDT Sbjct: 301 NVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAFVEDT 360 Query: 1230 ELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDGQFLPL 1409 LRQDLRQHLKRISDIERL+HNLEKRRAGLQHIVKLYQSSIRLP I+ AL +YDGQF L Sbjct: 361 ALRQDLRQHLKRISDIERLVHNLEKRRAGLQHIVKLYQSSIRLPYIRGALDKYDGQFSSL 420 Query: 1410 LKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDERDAVE 1589 +KERYLDPLE TDD+HLN+FIALVE SVDLDQL+NGEY+IS YD L+ALKDE++++E Sbjct: 421 IKERYLDPLESLTDDDHLNKFIALVETSVDLDQLDNGEYLISPSYDPALSALKDEQESLE 480 >ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max] Length = 942 Score = 730 bits (1884), Expect = 0.0 Identities = 365/485 (75%), Positives = 411/485 (84%), Gaps = 1/485 (0%) Frame = +3 Query: 138 MEGNLED-QNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAK 314 M N +D NKLPELKLD+KQAQGF+S FKTLP DPRAVRFFDRRDYYTAHGENATFIAK Sbjct: 1 MAENFDDLNNKLPELKLDSKQAQGFLSFFKTLPDDPRAVRFFDRRDYYTAHGENATFIAK 60 Query: 315 TYYHTTTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKS 494 TYYHTTTA+RQL +NMFETIARDLLLERTDHTLELYEGSGSNWRL KS Sbjct: 61 TYYHTTTAMRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKS 120 Query: 495 GTPGNLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDS 674 GTPGN+GSFED+LFAN+EMQDSPVVVAL +REN CTIGLGF+DLTKRV+G+AEFLDDS Sbjct: 121 GTPGNIGSFEDVLFANSEMQDSPVVVALSLNYRENGCTIGLGFVDLTKRVLGMAEFLDDS 180 Query: 675 QFTNVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDL 854 FTNVES VALGCKEC++P+ESGKS E++ L + L++CGV++TE+KK+EFK+RDLVQDL Sbjct: 181 HFTNVESAFVALGCKECILPIESGKSTENRMLCDVLTKCGVMLTEKKKSEFKTRDLVQDL 240 Query: 855 SRLVKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSA 1034 RLVKG IEPVRDLVS DE NY NYT++ YNLD YMRLDSA Sbjct: 241 GRLVKGPIEPVRDLVSGFEFAPGALGALLSYAELLADESNYENYTLRSYNLDSYMRLDSA 300 Query: 1035 AMRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQA 1214 AMRALNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPL+D+ EIN+RLD+VQA Sbjct: 301 AMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHVWLKQPLVDVKEINSRLDIVQA 360 Query: 1215 FVEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDG 1394 FVEDT LRQDLRQHLKRISDIERLMHN++KRRAGLQHIVKLYQSSIRLP IK+AL RYDG Sbjct: 361 FVEDTALRQDLRQHLKRISDIERLMHNIQKRRAGLQHIVKLYQSSIRLPYIKSALERYDG 420 Query: 1395 QFLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDE 1574 QF +++ RYL+P+E WTDDEHLN+FI LVEASVDLDQLEN EYMIS YDS LA LKD+ Sbjct: 421 QFSTMMRSRYLEPIELWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSILANLKDQ 480 Query: 1575 RDAVE 1589 ++ +E Sbjct: 481 QELLE 485 >ref|NP_001234067.1| mismatch repair protein [Solanum lycopersicum] gi|296034481|gb|ADG85112.1| mismatch repair protein [Solanum lycopersicum] Length = 943 Score = 726 bits (1875), Expect = 0.0 Identities = 358/484 (73%), Positives = 407/484 (84%) Frame = +3 Query: 138 MEGNLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKT 317 M+ N E Q KLPELKLDA+QAQGF+S FKTLPKD RAVR FDRRDYYTAHG++ATFIAKT Sbjct: 1 MDENFEKQGKLPELKLDARQAQGFLSFFKTLPKDVRAVRLFDRRDYYTAHGDDATFIAKT 60 Query: 318 YYHTTTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSG 497 YYHTTTALRQL +NMFETIARD+LLER D TLELYEGSGSNW+L KSG Sbjct: 61 YYHTTTALRQLGNGVGALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWKLVKSG 120 Query: 498 TPGNLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQ 677 TPGN GSFEDILFANNEMQDSPV+VAL P F +N CT+GLG++D+TKRV+GLAEFLDDS Sbjct: 121 TPGNFGSFEDILFANNEMQDSPVIVALAPKFDQNGCTVGLGYVDITKRVLGLAEFLDDSH 180 Query: 678 FTNVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLS 857 FTN+ES LVALGC+ECLVP E+GKS ES+ L +A+SRCGV+VTERKKTEFK RDLVQDL Sbjct: 181 FTNLESALVALGCRECLVPTETGKSSESRPLYDAISRCGVMVTERKKTEFKGRDLVQDLG 240 Query: 858 RLVKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSAA 1037 RLVKGS+EPVRDLVS+ D+ NYGNYT+++YNLD YMRLDSAA Sbjct: 241 RLVKGSVEPVRDLVSSFECAAGALGCILSYAELLADDSNYGNYTVKQYNLDSYMRLDSAA 300 Query: 1038 MRALNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQAF 1217 MRALNV+ESK+DANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPLLD+ EIN RLD+VQAF Sbjct: 301 MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAF 360 Query: 1218 VEDTELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDGQ 1397 VED LRQDLRQHLKRISDIERL HNLE++RA L H+VKLYQS IR+P IK+ L RYDGQ Sbjct: 361 VEDAALRQDLRQHLKRISDIERLTHNLERKRASLLHVVKLYQSGIRIPYIKSVLERYDGQ 420 Query: 1398 FLPLLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDER 1577 F PL++ERY+D LE W+DD HLN+FIALVE +VDLDQLENGEYMISS YD NL+ALKDE+ Sbjct: 421 FAPLIRERYIDSLEKWSDDNHLNKFIALVETAVDLDQLENGEYMISSAYDPNLSALKDEQ 480 Query: 1578 DAVE 1589 + +E Sbjct: 481 ETLE 484 >ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1| predicted protein [Populus trichocarpa] Length = 944 Score = 712 bits (1837), Expect = 0.0 Identities = 357/481 (74%), Positives = 399/481 (82%) Frame = +3 Query: 147 NLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYH 326 N E+QNKLPELKLDAKQAQGF+S FKTLP DPRAVR FDRRDYYT H ENATFIAKTYYH Sbjct: 6 NFEEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTVHAENATFIAKTYYH 65 Query: 327 TTTALRQLXXXXXXXXXXXXXKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPG 506 TTTALRQL KNMFETIARDLLLERTDHTLELYEGSGSNW+L KSGTPG Sbjct: 66 TTTALRQLGSGSNGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWKLVKSGTPG 125 Query: 507 NLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTN 686 NLGSFED+LFANN+MQDSPVVVAL FRE CT+GL ++DLTKRV+GLAEFLDDS FTN Sbjct: 126 NLGSFEDVLFANNDMQDSPVVVALLLNFREKGCTVGLSYVDLTKRVLGLAEFLDDSHFTN 185 Query: 687 VESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLSRLV 866 VES LVAL CKECL+P+ESGKS + + L + L++CGV++TERKK EFK+RDLVQDL RLV Sbjct: 186 VESALVALSCKECLLPMESGKSNDCRTLHDVLTKCGVMLTERKKNEFKTRDLVQDLGRLV 245 Query: 867 KGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXXDERNYGNYTIQRYNLDGYMRLDSAAMRA 1046 KG +EPVRDLVS DE NYGNY I++YNLD YMRLDSAA RA Sbjct: 246 KGPLEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYRIRKYNLDSYMRLDSAATRA 305 Query: 1047 LNVLESKTDANKNFSIFGLMNRTCTAGMGKRLLNRWLKQPLLDIVEINNRLDMVQAFVED 1226 LNVLESKTDANKNFS+FGLMNRTCTAGMGKRLL+ WLKQPLL++ IN+RLD+VQAFV+D Sbjct: 306 LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLEVDAINSRLDLVQAFVDD 365 Query: 1227 TELRQDLRQHLKRISDIERLMHNLEKRRAGLQHIVKLYQSSIRLPSIKTALGRYDGQFLP 1406 T LRQDLRQHLKRISDIERLMH +EK RAGL HIVKLYQS IRLP IK AL RYDGQF Sbjct: 366 TGLRQDLRQHLKRISDIERLMHIVEKGRAGLHHIVKLYQSIIRLPYIKGALERYDGQFSS 425 Query: 1407 LLKERYLDPLECWTDDEHLNRFIALVEASVDLDQLENGEYMISSGYDSNLAALKDERDAV 1586 L+KE+YL+ LE WTDD HLN+FIALVE +VDLDQL+NGEYMIS GY++ L ALK E++++ Sbjct: 426 LIKEKYLESLEVWTDDNHLNKFIALVETAVDLDQLDNGEYMISPGYEAALGALKAEQESL 485 Query: 1587 E 1589 E Sbjct: 486 E 486