BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013168
         (665 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16435.3| unnamed protein product [Vitis vinifera]              324   1e-86
ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-lik...   311   5e-83
ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-lik...   305   4e-81
ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thal...   305   5e-81
dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Ara...   305   5e-81

>emb|CBI16435.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score =  324 bits (830), Expect = 1e-86
 Identities = 165/197 (83%), Positives = 180/197 (91%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588  QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409
            QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQ QDKIGVFVSIVSTKIPFKG
Sbjct: 458  QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQAQDKIGVFVSIVSTKIPFKG 517

Query: 408  TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229
            TGKEYIGDDI EIASAVK+SIQQCC+QLKSKIVKKIQAR QQERKRNLSKYIPD T AI+
Sbjct: 518  TGKEYIGDDISEIASAVKSSIQQCCIQLKSKIVKKIQARVQQERKRNLSKYIPDATGAIY 577

Query: 228  GILSDTAQQHA-KKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52
             +L + AQ HA KK+RYE E+A+VL+KVS   +TK+ L E+LAKHVEQVDYEMAL+YA Q
Sbjct: 578  DVLREMAQLHASKKKRYEDEDADVLRKVSTHSITKQTLSEKLAKHVEQVDYEMALEYATQ 637

Query: 51   SGVSEEPREAIYIQALE 1
            SGVSEEPREAIY+Q+LE
Sbjct: 638  SGVSEEPREAIYLQSLE 654


>ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus]
            gi|449525918|ref|XP_004169963.1| PREDICTED: DNA
            topoisomerase 6 subunit B-like [Cucumis sativus]
          Length = 696

 Score =  311 bits (798), Expect = 5e-83
 Identities = 154/197 (78%), Positives = 180/197 (91%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588  QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409
            QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQ QDKIGVFVSIVSTKIPFKG
Sbjct: 481  QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQAQDKIGVFVSIVSTKIPFKG 540

Query: 408  TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229
            TGKEYIGDDI EIASAVK++IQQCC+QLKSKIVKKIQAREQQERKRNLS+YIPD TNA++
Sbjct: 541  TGKEYIGDDISEIASAVKSAIQQCCIQLKSKIVKKIQAREQQERKRNLSRYIPDATNAVY 600

Query: 228  GILSDTAQQHA-KKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52
             +L + AQ HA KK+R++ E+AE+L KVSA+++T E LR++LA+HVEQVD+EMA++YA Q
Sbjct: 601  NVLKEMAQVHASKKKRHDCEDAEILSKVSARLITNETLRDKLAQHVEQVDHEMAMEYATQ 660

Query: 51   SGVSEEPREAIYIQALE 1
            SG S E +E +YIQ+L+
Sbjct: 661  SGASAEAKEEMYIQSLD 677


>ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform 1 [Glycine max]
          Length = 673

 Score =  305 bits (782), Expect = 4e-81
 Identities = 156/197 (79%), Positives = 174/197 (88%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588  QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409
            QGLNIFRFANRIPLLFEQGADVVTRTA KRINW+SYKINQ QDKIGVFVSIVSTKIPFKG
Sbjct: 458  QGLNIFRFANRIPLLFEQGADVVTRTAHKRINWSSYKINQMQDKIGVFVSIVSTKIPFKG 517

Query: 408  TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229
            TGKEYIGDDI EIASAVK +IQQCCVQLKSKIVKK+ AREQQERKRNLS+YIPD + A++
Sbjct: 518  TGKEYIGDDITEIASAVKYAIQQCCVQLKSKIVKKMHAREQQERKRNLSRYIPDASGAVY 577

Query: 228  GILSDTAQQHA-KKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52
             +L +  Q HA KK RY  ++AE+L KVS  ++TKE L E+L+KHVEQVDYEMAL+YA Q
Sbjct: 578  NVLKEMTQLHASKKIRYGDDDAELLSKVSENLITKETLCEKLSKHVEQVDYEMALEYATQ 637

Query: 51   SGVSEEPREAIYIQALE 1
            SGVSEEPRE IYIQ+LE
Sbjct: 638  SGVSEEPRETIYIQSLE 654


>ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thaliana]
            gi|75169001|sp|Q9C5V6.1|TOP6B_ARATH RecName: Full=DNA
            topoisomerase 6 subunit B; Short=AtTOP6B; AltName:
            Full=Protein BRASSINOSTEROID INSENSITIVE 3; AltName:
            Full=Protein ELONGATED HYPOCOTYL 6; AltName: Full=Protein
            ROOT HAIRLESS 3 gi|12331188|emb|CAC24690.1| topoisomerase
            6 subunit B [Arabidopsis thaliana]
            gi|332642901|gb|AEE76422.1| DNA topoisomerase 6 subunit B
            [Arabidopsis thaliana]
          Length = 670

 Score =  305 bits (781), Expect = 5e-81
 Identities = 150/197 (76%), Positives = 177/197 (89%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588  QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409
            QG+NIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG
Sbjct: 454  QGINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 513

Query: 408  TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229
            TGKEYIGDDI EIA+AVK++IQQCC+QLKSKIVK++QAREQQERKR+LS+YIPD T A++
Sbjct: 514  TGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVY 573

Query: 228  GILSDTAQQH-AKKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52
             +L    ++H  K++RY  E+  +L KVS +++TKE L+E+LA+HVEQVDYEMAL+YA Q
Sbjct: 574  EVLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQ 633

Query: 51   SGVSEEPREAIYIQALE 1
            SGVSEEPRE IY+Q L+
Sbjct: 634  SGVSEEPRENIYLQHLD 650


>dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Arabidopsis thaliana]
          Length = 694

 Score =  305 bits (781), Expect = 5e-81
 Identities = 150/197 (76%), Positives = 177/197 (89%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588  QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409
            QG+NIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG
Sbjct: 478  QGINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 537

Query: 408  TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229
            TGKEYIGDDI EIA+AVK++IQQCC+QLKSKIVK++QAREQQERKR+LS+YIPD T A++
Sbjct: 538  TGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVY 597

Query: 228  GILSDTAQQH-AKKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52
             +L    ++H  K++RY  E+  +L KVS +++TKE L+E+LA+HVEQVDYEMAL+YA Q
Sbjct: 598  EVLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQ 657

Query: 51   SGVSEEPREAIYIQALE 1
            SGVSEEPRE IY+Q L+
Sbjct: 658  SGVSEEPRENIYLQHLD 674