BLASTX nr result
ID: Coptis24_contig00013168
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00013168 (665 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI16435.3| unnamed protein product [Vitis vinifera] 324 1e-86 ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 311 5e-83 ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 305 4e-81 ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thal... 305 5e-81 dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Ara... 305 5e-81 >emb|CBI16435.3| unnamed protein product [Vitis vinifera] Length = 673 Score = 324 bits (830), Expect = 1e-86 Identities = 165/197 (83%), Positives = 180/197 (91%), Gaps = 1/197 (0%) Frame = -3 Query: 588 QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409 QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQ QDKIGVFVSIVSTKIPFKG Sbjct: 458 QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQAQDKIGVFVSIVSTKIPFKG 517 Query: 408 TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229 TGKEYIGDDI EIASAVK+SIQQCC+QLKSKIVKKIQAR QQERKRNLSKYIPD T AI+ Sbjct: 518 TGKEYIGDDISEIASAVKSSIQQCCIQLKSKIVKKIQARVQQERKRNLSKYIPDATGAIY 577 Query: 228 GILSDTAQQHA-KKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52 +L + AQ HA KK+RYE E+A+VL+KVS +TK+ L E+LAKHVEQVDYEMAL+YA Q Sbjct: 578 DVLREMAQLHASKKKRYEDEDADVLRKVSTHSITKQTLSEKLAKHVEQVDYEMALEYATQ 637 Query: 51 SGVSEEPREAIYIQALE 1 SGVSEEPREAIY+Q+LE Sbjct: 638 SGVSEEPREAIYLQSLE 654 >ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus] gi|449525918|ref|XP_004169963.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus] Length = 696 Score = 311 bits (798), Expect = 5e-83 Identities = 154/197 (78%), Positives = 180/197 (91%), Gaps = 1/197 (0%) Frame = -3 Query: 588 QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409 QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQ QDKIGVFVSIVSTKIPFKG Sbjct: 481 QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQAQDKIGVFVSIVSTKIPFKG 540 Query: 408 TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229 TGKEYIGDDI EIASAVK++IQQCC+QLKSKIVKKIQAREQQERKRNLS+YIPD TNA++ Sbjct: 541 TGKEYIGDDISEIASAVKSAIQQCCIQLKSKIVKKIQAREQQERKRNLSRYIPDATNAVY 600 Query: 228 GILSDTAQQHA-KKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52 +L + AQ HA KK+R++ E+AE+L KVSA+++T E LR++LA+HVEQVD+EMA++YA Q Sbjct: 601 NVLKEMAQVHASKKKRHDCEDAEILSKVSARLITNETLRDKLAQHVEQVDHEMAMEYATQ 660 Query: 51 SGVSEEPREAIYIQALE 1 SG S E +E +YIQ+L+ Sbjct: 661 SGASAEAKEEMYIQSLD 677 >ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform 1 [Glycine max] Length = 673 Score = 305 bits (782), Expect = 4e-81 Identities = 156/197 (79%), Positives = 174/197 (88%), Gaps = 1/197 (0%) Frame = -3 Query: 588 QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409 QGLNIFRFANRIPLLFEQGADVVTRTA KRINW+SYKINQ QDKIGVFVSIVSTKIPFKG Sbjct: 458 QGLNIFRFANRIPLLFEQGADVVTRTAHKRINWSSYKINQMQDKIGVFVSIVSTKIPFKG 517 Query: 408 TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229 TGKEYIGDDI EIASAVK +IQQCCVQLKSKIVKK+ AREQQERKRNLS+YIPD + A++ Sbjct: 518 TGKEYIGDDITEIASAVKYAIQQCCVQLKSKIVKKMHAREQQERKRNLSRYIPDASGAVY 577 Query: 228 GILSDTAQQHA-KKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52 +L + Q HA KK RY ++AE+L KVS ++TKE L E+L+KHVEQVDYEMAL+YA Q Sbjct: 578 NVLKEMTQLHASKKIRYGDDDAELLSKVSENLITKETLCEKLSKHVEQVDYEMALEYATQ 637 Query: 51 SGVSEEPREAIYIQALE 1 SGVSEEPRE IYIQ+LE Sbjct: 638 SGVSEEPRETIYIQSLE 654 >ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thaliana] gi|75169001|sp|Q9C5V6.1|TOP6B_ARATH RecName: Full=DNA topoisomerase 6 subunit B; Short=AtTOP6B; AltName: Full=Protein BRASSINOSTEROID INSENSITIVE 3; AltName: Full=Protein ELONGATED HYPOCOTYL 6; AltName: Full=Protein ROOT HAIRLESS 3 gi|12331188|emb|CAC24690.1| topoisomerase 6 subunit B [Arabidopsis thaliana] gi|332642901|gb|AEE76422.1| DNA topoisomerase 6 subunit B [Arabidopsis thaliana] Length = 670 Score = 305 bits (781), Expect = 5e-81 Identities = 150/197 (76%), Positives = 177/197 (89%), Gaps = 1/197 (0%) Frame = -3 Query: 588 QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409 QG+NIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG Sbjct: 454 QGINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 513 Query: 408 TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229 TGKEYIGDDI EIA+AVK++IQQCC+QLKSKIVK++QAREQQERKR+LS+YIPD T A++ Sbjct: 514 TGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVY 573 Query: 228 GILSDTAQQH-AKKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52 +L ++H K++RY E+ +L KVS +++TKE L+E+LA+HVEQVDYEMAL+YA Q Sbjct: 574 EVLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQ 633 Query: 51 SGVSEEPREAIYIQALE 1 SGVSEEPRE IY+Q L+ Sbjct: 634 SGVSEEPRENIYLQHLD 650 >dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Arabidopsis thaliana] Length = 694 Score = 305 bits (781), Expect = 5e-81 Identities = 150/197 (76%), Positives = 177/197 (89%), Gaps = 1/197 (0%) Frame = -3 Query: 588 QGLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 409 QG+NIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG Sbjct: 478 QGINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKG 537 Query: 408 TGKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIH 229 TGKEYIGDDI EIA+AVK++IQQCC+QLKSKIVK++QAREQQERKR+LS+YIPD T A++ Sbjct: 538 TGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVY 597 Query: 228 GILSDTAQQH-AKKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQ 52 +L ++H K++RY E+ +L KVS +++TKE L+E+LA+HVEQVDYEMAL+YA Q Sbjct: 598 EVLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQ 657 Query: 51 SGVSEEPREAIYIQALE 1 SGVSEEPRE IY+Q L+ Sbjct: 658 SGVSEEPRENIYLQHLD 674