BLASTX nr result

ID: Coptis24_contig00013122 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013122
         (1528 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283782.2| PREDICTED: E3 ubiquitin-protein ligase HERC2...   646   0.0  
ref|XP_004148391.1| PREDICTED: E3 ubiquitin-protein ligase HERC2...   622   e-176
ref|XP_002324218.1| predicted protein [Populus trichocarpa] gi|2...   621   e-175
dbj|BAJ94465.1| predicted protein [Hordeum vulgare subsp. vulgar...   616   e-174
ref|XP_004162977.1| PREDICTED: E3 ubiquitin-protein ligase HERC2...   615   e-174

>ref|XP_002283782.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera]
          Length = 564

 Score =  646 bits (1666), Expect = 0.0
 Identities = 326/496 (65%), Positives = 375/496 (75%), Gaps = 5/496 (1%)
 Frame = +3

Query: 54   GKLSQKVISLAAGEAHTLALTGDGCVYSWGRGTFGRLGTGKEDDELFPVRVEFDKAQGDR 233
            G L  K++S+AAGEAH+L LTGDG VYSWGRGTFGRLGTG E DELFPV ++FD A+   
Sbjct: 11   GNLRGKIVSVAAGEAHSLVLTGDGRVYSWGRGTFGRLGTGSEADELFPVPIKFDSAEKSD 70

Query: 234  PK---FVEIAAGAYHSLALQDDGAIWCWGYNIYGQLGFNLENSLVPRFLEGFLELGSPDS 404
             K   FV IAAGAYHS+AL DDG +WCWGYN       + +N LVP  LE FL LGS  S
Sbjct: 71   SKGVKFVGIAAGAYHSVALADDGTVWCWGYN---SCILSDDNCLVPHLLELFLGLGSLGS 127

Query: 405  LRDESSIDSKKPLKVCSVKAGGMMSLAIDSLGALWIWGNYPPQNHSGDGEFSHISSSAPL 584
            L DES   +K PLKV +VKAGGMMSLAID+LG LW+WGN P ++    GEFS +SS  P+
Sbjct: 128  LTDESDTKNKTPLKVNAVKAGGMMSLAIDNLGGLWMWGNVP-ESSPDKGEFSLVSSFTPI 186

Query: 585  PVWEFHGHTVVKVACGNEHVVALVSAEETFTGGDLICYSWGNNNHRQLGLGDRENRLRPE 764
            PVW+FHGHTVVKVACGNEHVVALVS  ET+ GGDLICYSWGNN H QLGLGD ENRLRPE
Sbjct: 187  PVWDFHGHTVVKVACGNEHVVALVSHGETYKGGDLICYSWGNNGHGQLGLGDTENRLRPE 246

Query: 765  IVKTFNRECPWEVYEVACGAFHTAVLTRKKIHGNMIDSSHLESLELGEKESICWTFGLGD 944
            +VKTFN E  WEVYEVACGAFHTA+LT KK   + +             ES+CWTFGLGD
Sbjct: 247  VVKTFNLESLWEVYEVACGAFHTALLTHKKRPSDTL-------------ESMCWTFGLGD 293

Query: 945  NGQLGHGTTNSTYLPEPVKDLPPDVFLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPD 1124
            NGQLGHGTT    LPEPVKDLP   FL+SVDCGLFHTSVVSSAG+VWSWGMEKGLGLCPD
Sbjct: 294  NGQLGHGTTKGISLPEPVKDLPEHRFLVSVDCGLFHTSVVSSAGEVWSWGMEKGLGLCPD 353

Query: 1125 ASFTGTDAGDALSPLWIPCNEYGSKFVDPLQVVCGAAHTIIVAHSGYGLWAWGRGRSGAL 1304
            ASFTGTD GDA SPL      YGSKF DP+QV CGAAHT++VA  GY LW+WGRGRSG L
Sbjct: 354  ASFTGTDPGDAPSPLL-----YGSKFRDPVQVACGAAHTVLVADDGYKLWSWGRGRSGVL 408

Query: 1305 GSGNTADSYAPCSVMWPPLDEDFQDALE--IVGEEARIQDEEPRRLAEIDKKLSLAMEEI 1478
            G+G T D +AP +V+WPPL EDF++ LE      E +I++++P  + E++K+LSLA EE+
Sbjct: 409  GNGKTVDCFAPSTVLWPPLTEDFKE-LESGTTSGEKKIENKDPEEVTEMEKRLSLATEEM 467

Query: 1479 *HLRSKLTLTERYVSI 1526
              L SKL+  ERY SI
Sbjct: 468  KLLHSKLSTMERYASI 483


>ref|XP_004148391.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]
          Length = 571

 Score =  622 bits (1605), Expect = e-176
 Identities = 302/493 (61%), Positives = 369/493 (74%), Gaps = 3/493 (0%)
 Frame = +3

Query: 54   GKLSQKVISLAAGEAHTLALTGDGCVYSWGRGTFGRLGTGKEDDELFPVRVEFDKAQGDR 233
            GKLS KV++++AGEAHTL LTGDG VYSWGRG FGRLGTG E DELFPVRV+    + + 
Sbjct: 11   GKLSGKVVAISAGEAHTLVLTGDGRVYSWGRGMFGRLGTGAESDELFPVRVKLGSGE-EN 69

Query: 234  PKFVEIAAGAYHSLALQDDGAIWCWGYNIYGQLGFNLENSLVPRFLEGFLELGSPDSLRD 413
             K V IAAG+YHSLAL DDG++WCWGYNIYGQLGF+  NS  P  L+ FLEL  P+SL +
Sbjct: 70   LKVVAIAAGSYHSLALTDDGSVWCWGYNIYGQLGFDGGNSATPCLLKQFLELEPPESLTE 129

Query: 414  ESSIDSKKPLKVCSVKAGGMMSLAIDSLGALWIWGNYPPQNHSGDGEFSHISSSAPLPVW 593
            ES   SK  LK+C +KAGG +S AID LGALW+WGN P  +   +   S++SS  P PVW
Sbjct: 130  ESGSKSKGSLKICDIKAGGQISFAIDDLGALWMWGNCPKPSGENEVGLSYVSSFTPSPVW 189

Query: 594  EFHGHTVVKVACGNEHVVALVSAEETFT-GGDLICYSWGNNNHRQLGLGDRENRLRPEIV 770
            EFHGHTVVKVACGNEH+VALVS  ET+    DL+CYSWG+N+H QLGLGD+++R  P+I+
Sbjct: 190  EFHGHTVVKVACGNEHIVALVSVGETYNKAEDLVCYSWGDNSHGQLGLGDKDSRACPQII 249

Query: 771  KTFNRECPWEVYEVACGAFHTAVLTRKKIHGNMIDSSHLESLELGEKESICWTFGLGDNG 950
            +TFN   PW VYEVACGAFHTA+L+  K   + +             ES+CWTFGLG+NG
Sbjct: 250  ETFNEASPWAVYEVACGAFHTALLSHSKRPCDTL-------------ESVCWTFGLGENG 296

Query: 951  QLGHGTTNSTYLPEPVKDLPPDVFLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDAS 1130
            QLGHGTT + +LP+PVK+LP  V LISV CGLFHTSVVSS GD+WSWGME+GLGLCPDAS
Sbjct: 297  QLGHGTTQNEFLPQPVKELPQSVSLISVACGLFHTSVVSSGGDLWSWGMERGLGLCPDAS 356

Query: 1131 FTGTDAGDALSPLWIPCNEYGS-KFVDPLQVVCGAAHTIIVAHSGYGLWAWGRGRSGALG 1307
            FTGT+ GDA+SPL I C+   S KF+DP+QV CGAAHT+IVAH GY LW+WGRGRSG LG
Sbjct: 357  FTGTNTGDAISPLSIFCSGTESPKFLDPVQVACGAAHTVIVAHDGYKLWSWGRGRSGVLG 416

Query: 1308 SGNTADSYAPCSVMWPPLDEDF-QDALEIVGEEARIQDEEPRRLAEIDKKLSLAMEEI*H 1484
            +G   D + P  V+WPPL+EDF Q+  E   EE ++++ +   + E +KKL +AMEEI  
Sbjct: 417  NGKAVDCFTPTVVLWPPLNEDFDQEETETKCEEDKVEENKIEEVTEENKKLLMAMEEIKL 476

Query: 1485 LRSKLTLTERYVS 1523
            L  KL++ ERY S
Sbjct: 477  LLDKLSIMERYAS 489


>ref|XP_002324218.1| predicted protein [Populus trichocarpa] gi|222865652|gb|EEF02783.1|
            predicted protein [Populus trichocarpa]
          Length = 561

 Score =  621 bits (1602), Expect = e-175
 Identities = 309/488 (63%), Positives = 366/488 (75%), Gaps = 2/488 (0%)
 Frame = +3

Query: 60   LSQKVISLAAGEAHTLALTGDGCVYSWGRGTFGRLGTGKEDDELFPVRVEFDKAQGDRPK 239
            LS KV+S+A GEAH+L LTGDG VYSWG+G FGRLGTG E DELFPV+V+F+     R  
Sbjct: 7    LSGKVVSVATGEAHSLILTGDGRVYSWGKGMFGRLGTGSEVDELFPVQVKFETCVEKRLN 66

Query: 240  FVEIAAGAYHSLALQDDGAIWCWGYNIYGQLGFNLENSLVPRFLEGFLELGSPDSLRDES 419
            FV +AAGAYHSLAL DDG++WCWGYNIYGQLG + EN  +P  ++ FLELGS  SL D S
Sbjct: 67   FVGVAAGAYHSLALADDGSVWCWGYNIYGQLGVSGENYSMPHLMDQFLELGSLGSLIDHS 126

Query: 420  SIDSKKPLKVCSVKAGGMMSLAIDSLGALWIWGNYPPQNHSGDGEFSHISSSAPLPVWEF 599
               S+ PLK+CS+KAGGMMSLAID  GALW+WGN P Q +      S  SS  P+PV +F
Sbjct: 127  ETKSEGPLKICSIKAGGMMSLAIDDHGALWMWGNCPQQRNKTGSSISFESSFIPIPVRDF 186

Query: 600  HGHTVVKVACGNEHVVALVSAEETFTGGDLICYSWGNNNHRQLGLGDRENRLRPEIVKTF 779
            HGH+VVKVACG+EHVVALVSA ET+   DL+CYSWGNNNH QLGLGDRE+R+ PEIV+ F
Sbjct: 187  HGHSVVKVACGSEHVVALVSAGETYKVEDLVCYSWGNNNHGQLGLGDRESRVHPEIVEMF 246

Query: 780  NRECPWEVYEVACGAFHTAVLTRKKIHGNMIDSSHLESLELGEKESICWTFGLGDNGQLG 959
            N++  W+VYEVACGA+HTA+LTRK+               +   ES+CWTFGLGDNGQLG
Sbjct: 247  NKDSSWDVYEVACGAYHTALLTRKR-------------RTVDPLESVCWTFGLGDNGQLG 293

Query: 960  HGTTNSTYLPEPVKDLPPDVFLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDASFTG 1139
            HGTT S   PEPVK+LP    LISVDCGLFHTSVVSS GDVWSWGMEKGLGLCPDASFTG
Sbjct: 294  HGTTQSVLKPEPVKELPGQAHLISVDCGLFHTSVVSSVGDVWSWGMEKGLGLCPDASFTG 353

Query: 1140 TDAGDALSPLWIP-CNEYGSKFVDPLQVVCGAAHTIIVAHSGYGLWAWGRGRSGALGSGN 1316
            TDAGDA SPL +      G  F +P+QV CGAAHT++VA+ GY LW+WGRG SG LG+G 
Sbjct: 354  TDAGDAASPLLMSGYGVDGPIFHNPIQVACGAAHTVLVANDGYKLWSWGRGTSGVLGNGK 413

Query: 1317 TADSYAPCSVMWPPLDEDF-QDALEIVGEEARIQDEEPRRLAEIDKKLSLAMEEI*HLRS 1493
            T + +AP  V+WPPL EDF Q   + VGEE+       + +AE DK+LSLAMEEI  L+S
Sbjct: 414  TINCFAPSFVLWPPLTEDFKQPEPKTVGEES----NGSKAVAETDKRLSLAMEEIELLQS 469

Query: 1494 KLTLTERY 1517
            KL++ E+Y
Sbjct: 470  KLSIMEQY 477


>dbj|BAJ94465.1| predicted protein [Hordeum vulgare subsp. vulgare]
            gi|326532960|dbj|BAJ89325.1| predicted protein [Hordeum
            vulgare subsp. vulgare]
          Length = 566

 Score =  616 bits (1588), Expect = e-174
 Identities = 310/494 (62%), Positives = 366/494 (74%), Gaps = 8/494 (1%)
 Frame = +3

Query: 69   KVISLAAGEAHTLALTGDGCVYSWGRGTFGRLGTGKEDDELFPVRV----EFDKAQGDRP 236
            KV ++AAGEAHTLALTGDG VYSWGRGTFGRLGTG+E D   P  V        A   RP
Sbjct: 4    KVSAVAAGEAHTLALTGDGEVYSWGRGTFGRLGTGREADVHVPTAVLPAVAAAAAGRPRP 63

Query: 237  KFVEIAAGAYHSLALQDDGAIWCWGYNIYGQLGFNLENSLVPRFLEGFLELGSPDSLRDE 416
            +FV +AAGAYHSLAL D+G++W WGYNIYGQLG+  ENSL P  ++GF +LGSP++L+DE
Sbjct: 64   RFVAVAAGAYHSLALDDEGSLWSWGYNIYGQLGYGEENSLSPCLVDGFQDLGSPETLQDE 123

Query: 417  SSID-SKKPLKVCSVKAGGMMSLAIDSLGALWIWGNYPPQNHSGDGEFSHISSSAPLPVW 593
            +    ++ PLK+ SVKAGGMMS AIDSLGALW+WGN P Q  + DGEF   ++SAPLPVW
Sbjct: 124  AQDTLARTPLKLSSVKAGGMMSFAIDSLGALWMWGNCPQQ--TDDGEFYIAATSAPLPVW 181

Query: 594  EFHGHTVVKVACGNEHVVALVSAEETFTGGDLICYSWGNNNHRQLGLGDRENRLRPEIVK 773
            +FHGHTVVKVACGNEHVVA VSA ET+TGGDL+CYSWGNNNH QLGLGD+E+R RP ++ 
Sbjct: 182  DFHGHTVVKVACGNEHVVAAVSAGETYTGGDLVCYSWGNNNHGQLGLGDKESRSRPMLIP 241

Query: 774  TFNRECPWEVYEVACGAFHTAVLTRKKIHGNMIDSSHLESLELGEKESICWTFGLGDNGQ 953
             F     WEVYE+ACGA+HTAVLT KK                 + ES CWTFG+GDNGQ
Sbjct: 242  EFGEGSSWEVYEIACGAWHTAVLTNKKSFDQ-------------DLESRCWTFGIGDNGQ 288

Query: 954  LGHGTTNSTYLPEPVKDLPPDVFLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDASF 1133
            LGHGTT +T  P+PV  LP   FLIS+DCGLFHT+VVSS G+VW WGME+GLGLCPDASF
Sbjct: 289  LGHGTTATTCSPQPVDGLPTGSFLISLDCGLFHTAVVSSDGEVWCWGMERGLGLCPDASF 348

Query: 1134 TGTDAGDALSPLWIPCNE-YGSKFVDPLQVVCGAAHTIIVAHSGYGLWAWGRGRSGALGS 1310
            +G DAGDAL P+ +   E  G KF+ P+QV CGAAHT++VA  GY +WAWGRGRSG LG 
Sbjct: 349  SGMDAGDALHPIRVQSPETNGFKFLGPVQVACGAAHTVLVAGDGYRMWAWGRGRSGVLGR 408

Query: 1311 GNTADSYAPCSVMWPPLDEDFQDALEIVGEEARIQDE--EPRRLAEIDKKLSLAMEEI*H 1484
              T DSY PC VMWPPLDE+FQ   EI G++A+        R   E++ KLS A EE+  
Sbjct: 409  DQTTDSYTPCVVMWPPLDENFQ---EIHGDQAQASTSRANDRTNTELELKLSAASEELQF 465

Query: 1485 LRSKLTLTERYVSI 1526
            LRSKLTL ERY +I
Sbjct: 466  LRSKLTLMERYANI 479


>ref|XP_004162977.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]
          Length = 581

 Score =  615 bits (1587), Expect = e-174
 Identities = 303/503 (60%), Positives = 371/503 (73%), Gaps = 13/503 (2%)
 Frame = +3

Query: 54   GKLSQKVISLAAGEAHTLALTGDGCVYSWGRGTFGRLGTGKEDDELFPVRVEFDKAQGDR 233
            GKLS KV++++AGEAHTL LTGDG VYSWGRG FGRLGTG E DELFPVRV+    + + 
Sbjct: 11   GKLSGKVVAISAGEAHTLVLTGDGRVYSWGRGMFGRLGTGAESDELFPVRVKLGSGE-EN 69

Query: 234  PKFVEIAAGAYHSLALQDDGAIWCWGYNIYGQLGFNLENSLVPRFLEGFLELGSPDSLRD 413
             K V IAAG+YHSLAL DDG++WCWGYNIYGQLGF+  NS  P  L+ FLEL  P+SL +
Sbjct: 70   LKVVAIAAGSYHSLALTDDGSVWCWGYNIYGQLGFDGGNSATPCLLKQFLELEPPESLTE 129

Query: 414  ESSIDSKKPLKVCSVKAGGMMSLAIDSLGALWIWGNYPPQNHSGDGEFSHISSSAPLPVW 593
            ES   SK  LK+C +KAGG +S AID LGALW+WGN P  +   +   S++SS  P PVW
Sbjct: 130  ESGSKSKGSLKICDIKAGGQISFAIDDLGALWMWGNCPKPSGENEVGLSYVSSFTPSPVW 189

Query: 594  EFHGHTVVKVACGNEHVVALVSAEETFT-GGDLICYSWGNNNHRQLGLGDRENRLRPEIV 770
            EFHGHTVVKVACGNEH+VALVS  ET+    DL+CYSWG+N+H QLGLGD+++R  P+I+
Sbjct: 190  EFHGHTVVKVACGNEHIVALVSVGETYNKAEDLVCYSWGDNSHGQLGLGDKDSRACPQII 249

Query: 771  KTFNRECPWEVYEVACGAFHTAVLTRKKIHGNMIDSSHLESLELGEKESICWTFGLGDNG 950
            +TFN   PW VYEVACGAFHTA+L+  K   + +             ES+CWTFGLG+NG
Sbjct: 250  ETFNEASPWAVYEVACGAFHTALLSHSKRPCDTL-------------ESVCWTFGLGENG 296

Query: 951  QLGHGTTNSTYLPEPVKDLPPDVFLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDAS 1130
            QLGHGTT + +LP+PVK+LP  V LISV CGLFHTSVVSS GD+WSWGME+GLGLCPDAS
Sbjct: 297  QLGHGTTQNEFLPQPVKELPQSVSLISVACGLFHTSVVSSGGDLWSWGMERGLGLCPDAS 356

Query: 1131 FTGTDAGDALSPLWIPCNEYGS-KFVDPLQVVCGAAHTIIVAHSGYGLWAWGRGRSGALG 1307
            FTGT+ GDA+SPL I C+   S KF+DP+QV CGAAHT+IVAH GY LW+WGRGRSG LG
Sbjct: 357  FTGTNTGDAISPLSIFCSGTESPKFLDPVQVACGAAHTVIVAHDGYKLWSWGRGRSGVLG 416

Query: 1308 SGNTADSYAPCSVMWPPLDEDF-QDALEIVGEEARIQDE-------EPRRLAEI---DKK 1454
            +G   D + P  V+WPPL+EDF Q+  E   EE ++++        E  ++ E+   +KK
Sbjct: 417  NGKAVDCFTPTVVLWPPLNEDFDQEETETKCEEDKVEENKTEEDKVEENKIEEVTEENKK 476

Query: 1455 LSLAMEEI*HLRSKLTLTERYVS 1523
            L +AMEEI  L  KL++ ERY S
Sbjct: 477  LLMAMEEIKLLLDKLSIMERYAS 499


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