BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013120
         (1086 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283782.2| PREDICTED: E3 ubiquitin-protein ligase HERC2...   181   3e-43
ref|XP_004148391.1| PREDICTED: E3 ubiquitin-protein ligase HERC2...   176   9e-42
emb|CAK22423.1| regulator of chromosome condensation family prot...   174   4e-41
ref|XP_004162977.1| PREDICTED: E3 ubiquitin-protein ligase HERC2...   170   6e-40
gb|ACL53116.1| unknown [Zea mays] gi|224034505|gb|ACN36328.1| un...   170   6e-40

>ref|XP_002283782.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera]
          Length = 564

 Score =  181 bits (459), Expect = 3e-43
 Identities = 94/158 (59%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
 Frame = +3

Query: 618  VDCGLFHTFVVSSAGDVWSWGMEKGLGPCPDASFIGTDAGDALSALWIPCNEYSSKFVDP 797
            VDCGLFHT VVSSAG+VWSWGMEKGLG CPDASF GTD GDA S L      Y SKF DP
Sbjct: 323  VDCGLFHTSVVSSAGEVWSWGMEKGLGLCPDASFTGTDPGDAPSPLL-----YGSKFRDP 377

Query: 798  LQVVCGAAHTIIVAHSGYGLWPSGTGRNGALGSGNTADSYAPCSVM*PPLDEDFQDALE- 974
            +QV CGAAHT++VA  GY LW  G GR+G LG+G T D +AP +V+ PPL EDF++ LE 
Sbjct: 378  VQVACGAAHTVLVADDGYKLWSWGRGRSGVLGNGKTVDCFAPSTVLWPPLTEDFKE-LES 436

Query: 975  -FVGEEARIQDEEPGRLAEIDKKLSLAMEEI*HLRSKL 1085
                 E +I++++P  + E++K+LSLA EE+  L SKL
Sbjct: 437  GTTSGEKKIENKDPEEVTEMEKRLSLATEEMKLLHSKL 474


>ref|XP_004148391.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]
          Length = 571

 Score =  176 bits (446), Expect = 9e-42
 Identities = 90/158 (56%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
 Frame = +3

Query: 618  VDCGLFHTFVVSSAGDVWSWGMEKGLGPCPDASFIGTDAGDALSALWIPCNEYSS-KFVD 794
            V CGLFHT VVSS GD+WSWGME+GLG CPDASF GT+ GDA+S L I C+   S KF+D
Sbjct: 324  VACGLFHTSVVSSGGDLWSWGMERGLGLCPDASFTGTNTGDAISPLSIFCSGTESPKFLD 383

Query: 795  PLQVVCGAAHTIIVAHSGYGLWPSGTGRNGALGSGNTADSYAPCSVM*PPLDEDF-QDAL 971
            P+QV CGAAHT+IVAH GY LW  G GR+G LG+G   D + P  V+ PPL+EDF Q+  
Sbjct: 384  PVQVACGAAHTVIVAHDGYKLWSWGRGRSGVLGNGKAVDCFTPTVVLWPPLNEDFDQEET 443

Query: 972  EFVGEEARIQDEEPGRLAEIDKKLSLAMEEI*HLRSKL 1085
            E   EE ++++ +   + E +KKL +AMEEI  L  KL
Sbjct: 444  ETKCEEDKVEENKIEEVTEENKKLLMAMEEIKLLLDKL 481


>emb|CAK22423.1| regulator of chromosome condensation family protein [Beta vulgaris]
          Length = 573

 Score =  174 bits (440), Expect = 4e-41
 Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
 Frame = +3

Query: 618  VDCGLFHTFVVSSAGDVWSWGMEKGLGPCPDASFIGTDAGDALSALWIPCNE-YSSKFVD 794
            VDCGLFHT VVSSAG+VWSWGMEKGLG CPD SF G D GDA+  L I CN     KF +
Sbjct: 325  VDCGLFHTSVVSSAGEVWSWGMEKGLGLCPDVSFSGIDHGDAILPLQILCNRPQGPKFPE 384

Query: 795  PLQVVCGAAHTIIVAHSGYGLWPSGTGRNGALGSGNTADSYAPCSVM*PPLDEDFQDALE 974
            P+ + CGAAHT++VA  GY LW  G GR+G LG G  +DSY+P  V+ PPL EDF+D L 
Sbjct: 385  PVGIACGAAHTVLVADDGYKLWSWGRGRSGVLGDGKGSDSYSPSMVLWPPLSEDFKDGLN 444

Query: 975  FVGEEARIQDEEPGRLAEIDKKLSLAMEEI*HLRSKL 1085
                E++ + E+   + E+D+K+S  +EE+  L+SKL
Sbjct: 445  SPDTESK-KPEKKAEVTEVDEKVSPTLEEMKRLQSKL 480


>ref|XP_004162977.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]
          Length = 581

 Score =  170 bits (430), Expect = 6e-40
 Identities = 91/168 (54%), Positives = 114/168 (67%), Gaps = 12/168 (7%)
 Frame = +3

Query: 618  VDCGLFHTFVVSSAGDVWSWGMEKGLGPCPDASFIGTDAGDALSALWIPCNEYSS-KFVD 794
            V CGLFHT VVSS GD+WSWGME+GLG CPDASF GT+ GDA+S L I C+   S KF+D
Sbjct: 324  VACGLFHTSVVSSGGDLWSWGMERGLGLCPDASFTGTNTGDAISPLSIFCSGTESPKFLD 383

Query: 795  PLQVVCGAAHTIIVAHSGYGLWPSGTGRNGALGSGNTADSYAPCSVM*PPLDEDF-QDAL 971
            P+QV CGAAHT+IVAH GY LW  G GR+G LG+G   D + P  V+ PPL+EDF Q+  
Sbjct: 384  PVQVACGAAHTVIVAHDGYKLWSWGRGRSGVLGNGKAVDCFTPTVVLWPPLNEDFDQEET 443

Query: 972  EFVGEEARIQDE-------EPGRLAEI---DKKLSLAMEEI*HLRSKL 1085
            E   EE ++++        E  ++ E+   +KKL +AMEEI  L  KL
Sbjct: 444  ETKCEEDKVEENKTEEDKVEENKIEEVTEENKKLLMAMEEIKLLLDKL 491


>gb|ACL53116.1| unknown [Zea mays] gi|224034505|gb|ACN36328.1| unknown [Zea mays]
            gi|414880673|tpg|DAA57804.1| TPA: putative regulator of
            chromosome condensation (RCC1) family protein isoform 1
            [Zea mays] gi|414880674|tpg|DAA57805.1| TPA: putative
            regulator of chromosome condensation (RCC1) family
            protein isoform 2 [Zea mays]
          Length = 416

 Score =  170 bits (430), Expect = 6e-40
 Identities = 86/157 (54%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
 Frame = +3

Query: 618  VDCGLFHTFVVSSAGDVWSWGMEKGLGPCPDASFIGTDAGDALSALWIPCNEYSS-KFVD 794
            +DCGLFHT VVSS G+VW WGME+GLG CPDASF G D GDAL  + +   E +  KF+ 
Sbjct: 172  LDCGLFHTTVVSSDGEVWCWGMERGLGLCPDASFSGVDEGDALYPIRVQSPETNGFKFLG 231

Query: 795  PLQVVCGAAHTIIVAHSGYGLWPSGTGRNGALGSGNTADSYAPCSVM*PPLDEDFQDALE 974
            P+Q+ CGAAHT++VA  GY +W  G GR+G LG G TADSY PC VM PPLDE+F +  +
Sbjct: 232  PVQIACGAAHTVLVAGDGYRMWAWGRGRSGVLGRGQTADSYIPCVVMWPPLDENFHED-Q 290

Query: 975  FVGEEARIQDEEPGRLAEIDKKLSLAMEEI*HLRSKL 1085
              G  +R+ D       E+++KLS A EE+  LRSKL
Sbjct: 291  MGGSTSRVNDHTS---TELEQKLSAASEELQFLRSKL 324