BLASTX nr result
ID: Coptis24_contig00013115
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00013115
(1051 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI23113.3| unnamed protein product [Vitis vinifera] 440 e-121
ref|XP_003574192.1| PREDICTED: LOW QUALITY PROTEIN: mutS2 protei... 400 e-109
ref|NP_001065027.2| Os10g0509000 [Oryza sativa Japonica Group] g... 400 e-109
ref|XP_002519605.1| DNA mismatch repair protein muts2, putative ... 400 e-109
ref|XP_002269872.2| PREDICTED: mutS2 protein-like [Vitis vinifera] 396 e-108
>emb|CBI23113.3| unnamed protein product [Vitis vinifera]
Length = 807
Score = 440 bits (1132), Expect = e-121
Identities = 226/328 (68%), Positives = 267/328 (81%), Gaps = 1/328 (0%)
Frame = -2
Query: 1017 HTSGTKTSNDDLT-QKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIANIRRRKLQPE 841
H SG TS ++EW L+LP AYHP L+KARK+V+ AI+ RR+KLQ E
Sbjct: 340 HLSGHGTSEASYPIKREWTLHLPKAYHPLLVQQHRENLQKARKDVSLAISEQRRKKLQGE 399
Query: 840 NNSLKEEPDVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGGKTICLKTIGL 661
++KEE D+N+ LEM+V +LE++ P+PVDFF+ +TRVL+ITGPNTGGKTICLKT+GL
Sbjct: 400 KFNVKEETDINLSSLEMQVTRLEQSPPVPVDFFIAQRTRVLVITGPNTGGKTICLKTVGL 459
Query: 660 AAMMAKSGLYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIGAIQALSTCQS 481
AAMMA+SGL+VL++EPVRIPWFD +F+DIGDEQSLS SLSTFSGHL+QI I+A ST QS
Sbjct: 460 AAMMARSGLHVLAAEPVRIPWFDYVFADIGDEQSLSQSLSTFSGHLKQISDIKAQSTNQS 519
Query: 480 LVLLDEVGGGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYSSTGVENACME 301
LVLLDEVG GTNPLEGAALGMS+LESFAE GALLTIATTHH ELKTLKYS+ ENACME
Sbjct: 520 LVLLDEVGAGTNPLEGAALGMSLLESFAETGALLTIATTHHSELKTLKYSNDAFENACME 579
Query: 300 FDDINLKPTYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEINEVIIEMEQF 121
FD++NLKPTYKILWG+PGRSNAINIAERLG+P VLD ARE YG ASAEINEVII+ME+F
Sbjct: 580 FDEVNLKPTYKILWGIPGRSNAINIAERLGVPKKVLDKAREQYGAASAEINEVIIDMERF 639
Query: 120 KQDLQKHVQEADHYLM*GLSMD*LHMLL 37
KQ+ Q+ V +A +YLM LS D LL
Sbjct: 640 KQEFQERVNDARYYLM--LSRDLYENLL 665
>ref|XP_003574192.1| PREDICTED: LOW QUALITY PROTEIN: mutS2 protein-like [Brachypodium
distachyon]
Length = 833
Score = 400 bits (1029), Expect = e-109
Identities = 191/309 (61%), Positives = 254/309 (82%)
Frame = -2
Query: 999 TSNDDLTQKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIANIRRRKLQPENNSLKEE 820
TS+ L +K W +++PNA+HP L++ +K+V +A A IRRR++ ++ + +++
Sbjct: 367 TSSAQLPKKPWKVFIPNAFHPLLLQQHQENLRRIKKDVASATAEIRRRRIYGQDIAEEDQ 426
Query: 819 PDVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGGKTICLKTIGLAAMMAKS 640
+++ ++ V+KLE+ HPIPVDF + +T VL+ITGPNTGGKTI LKT+GLA++MAK
Sbjct: 427 LASDLDSMKNRVSKLERNHPIPVDFMIGEETTVLVITGPNTGGKTISLKTVGLASLMAKI 486
Query: 639 GLYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIGAIQALSTCQSLVLLDEV 460
GLY+L+SEPV+IPWFD++++DIGDEQSL+ SLSTFSGHL+QIGAI+A ST QSLVLLDEV
Sbjct: 487 GLYILASEPVKIPWFDAVYADIGDEQSLTQSLSTFSGHLKQIGAIRAQSTSQSLVLLDEV 546
Query: 459 GGGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYSSTGVENACMEFDDINLK 280
G GTNPLEGAALGMS+LESFAE G+ LT+ATTHHGELKTLKYS+ ENAC+EFD+ NLK
Sbjct: 547 GAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGELKTLKYSNDSFENACVEFDEENLK 606
Query: 279 PTYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEINEVIIEMEQFKQDLQKH 100
PT++ILWG+PGRSNAINIAERLGLP ++++AR L GTA AEIN +I++ME+FKQ+ +
Sbjct: 607 PTFRILWGIPGRSNAINIAERLGLPLDIIESARHLLGTAGAEINALIMDMEKFKQEYDEQ 666
Query: 99 VQEADHYLM 73
+Q+A HYLM
Sbjct: 667 LQQAQHYLM 675
>ref|NP_001065027.2| Os10g0509000 [Oryza sativa Japonica Group]
gi|255679545|dbj|BAF26941.2| Os10g0509000 [Oryza sativa
Japonica Group]
Length = 528
Score = 400 bits (1029), Expect = e-109
Identities = 192/308 (62%), Positives = 254/308 (82%)
Frame = -2
Query: 996 SNDDLTQKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIANIRRRKLQPENNSLKEEP 817
S+ L++K W L +PNAYHP L +A+K+V +A A IRRR++ ++N +++
Sbjct: 64 SSAHLSKKAWKLCMPNAYHPLLLQQHQENLHRAKKDVASATAEIRRRRIYGQDNVEEDQL 123
Query: 816 DVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGGKTICLKTIGLAAMMAKSG 637
+++ +++ V+++EK P+PVDFF+ T VL+ITGPNTGGKTI LKT+GLA++MAK G
Sbjct: 124 ASDLDLMKIRVSQMEKDRPVPVDFFIAEGTTVLVITGPNTGGKTISLKTVGLASLMAKIG 183
Query: 636 LYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIGAIQALSTCQSLVLLDEVG 457
LY+L+SEPV+IPWF+++++DIGDEQSL+ SLSTFSGHL+QIGAI+A ST QSLVLLDEVG
Sbjct: 184 LYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSGHLKQIGAIRAWSTSQSLVLLDEVG 243
Query: 456 GGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYSSTGVENACMEFDDINLKP 277
GTNPLEGAALGMS+LESFAE G+ LT+ATTHHGELKTLKYS+ ENACMEFD+ NLKP
Sbjct: 244 AGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGELKTLKYSNDLFENACMEFDEDNLKP 303
Query: 276 TYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEINEVIIEMEQFKQDLQKHV 97
T++ILWG+PGRSNAINIAERLGLP+ +++++R+L GTA AEIN +I++ME FKQ Q H+
Sbjct: 304 TFRILWGIPGRSNAINIAERLGLPSDIIESSRQLLGTAGAEINALIMDMENFKQQYQHHL 363
Query: 96 QEADHYLM 73
QEA +Y+M
Sbjct: 364 QEAQYYVM 371
>ref|XP_002519605.1| DNA mismatch repair protein muts2, putative [Ricinus communis]
gi|223541195|gb|EEF42750.1| DNA mismatch repair protein
muts2, putative [Ricinus communis]
Length = 491
Score = 400 bits (1028), Expect = e-109
Identities = 205/325 (63%), Positives = 254/325 (78%)
Frame = -2
Query: 1050 KDKDGYFGVEYHTSGTKTSNDDLTQKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIA 871
+D DG F E ++ L +K WILY+ AYHP L+KA+K+ A +
Sbjct: 71 EDMDGLFTAEASEMRALKGSNPLERK-WILYMRKAYHPLLLQQHRQNLQKAQKDAKKATS 129
Query: 870 NIRRRKLQPENNSLKEEPDVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGG 691
+KLQ +N + E D++ E++V+ LE+AHP+PVDF + +RVL+ITGPNTGG
Sbjct: 130 ----QKLQGDNGMSRGETDLDSSSSEIKVSALEQAHPVPVDFLIAQNSRVLVITGPNTGG 185
Query: 690 KTICLKTIGLAAMMAKSGLYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIG 511
KTICLKT+GLAAMMAKSGLYVL SE V++PWFD I +DIGDEQSLS SLSTFSGHL+QI
Sbjct: 186 KTICLKTVGLAAMMAKSGLYVLCSESVQLPWFDYILADIGDEQSLSQSLSTFSGHLKQIS 245
Query: 510 AIQALSTCQSLVLLDEVGGGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYS 331
I++ ST +SLVLLDEVG GTNPLEGAALGMS+LESFAE GALLTIATTHH ELK+LKYS
Sbjct: 246 DIRSQSTNRSLVLLDEVGAGTNPLEGAALGMSLLESFAEDGALLTIATTHHSELKSLKYS 305
Query: 330 STGVENACMEFDDINLKPTYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEI 151
++ ENACMEFD++NLKPTYKI+WGVPGRSNAINI+E+LGLP+ V++ ARELYG ASAEI
Sbjct: 306 NSAFENACMEFDEVNLKPTYKIIWGVPGRSNAINISEKLGLPDRVINIARELYGAASAEI 365
Query: 150 NEVIIEMEQFKQDLQKHVQEADHYL 76
NEVII+ME+FKQ++Q+ + EA H +
Sbjct: 366 NEVIIDMERFKQEVQELLYEAQHQI 390
>ref|XP_002269872.2| PREDICTED: mutS2 protein-like [Vitis vinifera]
Length = 791
Score = 396 bits (1018), Expect = e-108
Identities = 212/328 (64%), Positives = 248/328 (75%), Gaps = 1/328 (0%)
Frame = -2
Query: 1017 HTSGTKTSNDDLT-QKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIANIRRRKLQPE 841
H SG TS ++EW L+LP AYHP L+KARK+V+ AI+
Sbjct: 351 HLSGHGTSEASYPIKREWTLHLPKAYHPLLVQQHRENLQKARKDVSLAIS---------- 400
Query: 840 NNSLKEEPDVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGGKTICLKTIGL 661
+ Y+ LE++ P+PVDFF+ +TRVL+ITGPNTGGKTICLKT+GL
Sbjct: 401 -----------VSYV------LEQSPPVPVDFFIAQRTRVLVITGPNTGGKTICLKTVGL 443
Query: 660 AAMMAKSGLYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIGAIQALSTCQS 481
AAMMA+SGL+VL++EPVRIPWFD +F+DIGDEQSLS SLSTFSGHL+QI I+A ST QS
Sbjct: 444 AAMMARSGLHVLAAEPVRIPWFDYVFADIGDEQSLSQSLSTFSGHLKQISDIKAQSTNQS 503
Query: 480 LVLLDEVGGGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYSSTGVENACME 301
LVLLDEVG GTNPLEGAALGMS+LESFAE GALLTIATTHH ELKTLKYS+ ENACME
Sbjct: 504 LVLLDEVGAGTNPLEGAALGMSLLESFAETGALLTIATTHHSELKTLKYSNDAFENACME 563
Query: 300 FDDINLKPTYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEINEVIIEMEQF 121
FD++NLKPTYKILWG+PGRSNAINIAERLG+P VLD ARE YG ASAEINEVII+ME+F
Sbjct: 564 FDEVNLKPTYKILWGIPGRSNAINIAERLGVPKKVLDKAREQYGAASAEINEVIIDMERF 623
Query: 120 KQDLQKHVQEADHYLM*GLSMD*LHMLL 37
KQ+ Q+ V +A +YLM LS D LL
Sbjct: 624 KQEFQERVNDARYYLM--LSRDLYENLL 649