BLASTX nr result

ID: Coptis24_contig00013115 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013115
         (1051 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI23113.3| unnamed protein product [Vitis vinifera]              440   e-121
ref|XP_003574192.1| PREDICTED: LOW QUALITY PROTEIN: mutS2 protei...   400   e-109
ref|NP_001065027.2| Os10g0509000 [Oryza sativa Japonica Group] g...   400   e-109
ref|XP_002519605.1| DNA mismatch repair protein muts2, putative ...   400   e-109
ref|XP_002269872.2| PREDICTED: mutS2 protein-like [Vitis vinifera]    396   e-108

>emb|CBI23113.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  440 bits (1132), Expect = e-121
 Identities = 226/328 (68%), Positives = 267/328 (81%), Gaps = 1/328 (0%)
 Frame = -2

Query: 1017 HTSGTKTSNDDLT-QKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIANIRRRKLQPE 841
            H SG  TS      ++EW L+LP AYHP         L+KARK+V+ AI+  RR+KLQ E
Sbjct: 340  HLSGHGTSEASYPIKREWTLHLPKAYHPLLVQQHRENLQKARKDVSLAISEQRRKKLQGE 399

Query: 840  NNSLKEEPDVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGGKTICLKTIGL 661
              ++KEE D+N+  LEM+V +LE++ P+PVDFF+  +TRVL+ITGPNTGGKTICLKT+GL
Sbjct: 400  KFNVKEETDINLSSLEMQVTRLEQSPPVPVDFFIAQRTRVLVITGPNTGGKTICLKTVGL 459

Query: 660  AAMMAKSGLYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIGAIQALSTCQS 481
            AAMMA+SGL+VL++EPVRIPWFD +F+DIGDEQSLS SLSTFSGHL+QI  I+A ST QS
Sbjct: 460  AAMMARSGLHVLAAEPVRIPWFDYVFADIGDEQSLSQSLSTFSGHLKQISDIKAQSTNQS 519

Query: 480  LVLLDEVGGGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYSSTGVENACME 301
            LVLLDEVG GTNPLEGAALGMS+LESFAE GALLTIATTHH ELKTLKYS+   ENACME
Sbjct: 520  LVLLDEVGAGTNPLEGAALGMSLLESFAETGALLTIATTHHSELKTLKYSNDAFENACME 579

Query: 300  FDDINLKPTYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEINEVIIEMEQF 121
            FD++NLKPTYKILWG+PGRSNAINIAERLG+P  VLD ARE YG ASAEINEVII+ME+F
Sbjct: 580  FDEVNLKPTYKILWGIPGRSNAINIAERLGVPKKVLDKAREQYGAASAEINEVIIDMERF 639

Query: 120  KQDLQKHVQEADHYLM*GLSMD*LHMLL 37
            KQ+ Q+ V +A +YLM  LS D    LL
Sbjct: 640  KQEFQERVNDARYYLM--LSRDLYENLL 665


>ref|XP_003574192.1| PREDICTED: LOW QUALITY PROTEIN: mutS2 protein-like [Brachypodium
            distachyon]
          Length = 833

 Score =  400 bits (1029), Expect = e-109
 Identities = 191/309 (61%), Positives = 254/309 (82%)
 Frame = -2

Query: 999  TSNDDLTQKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIANIRRRKLQPENNSLKEE 820
            TS+  L +K W +++PNA+HP         L++ +K+V +A A IRRR++  ++ + +++
Sbjct: 367  TSSAQLPKKPWKVFIPNAFHPLLLQQHQENLRRIKKDVASATAEIRRRRIYGQDIAEEDQ 426

Query: 819  PDVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGGKTICLKTIGLAAMMAKS 640
               +++ ++  V+KLE+ HPIPVDF +  +T VL+ITGPNTGGKTI LKT+GLA++MAK 
Sbjct: 427  LASDLDSMKNRVSKLERNHPIPVDFMIGEETTVLVITGPNTGGKTISLKTVGLASLMAKI 486

Query: 639  GLYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIGAIQALSTCQSLVLLDEV 460
            GLY+L+SEPV+IPWFD++++DIGDEQSL+ SLSTFSGHL+QIGAI+A ST QSLVLLDEV
Sbjct: 487  GLYILASEPVKIPWFDAVYADIGDEQSLTQSLSTFSGHLKQIGAIRAQSTSQSLVLLDEV 546

Query: 459  GGGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYSSTGVENACMEFDDINLK 280
            G GTNPLEGAALGMS+LESFAE G+ LT+ATTHHGELKTLKYS+   ENAC+EFD+ NLK
Sbjct: 547  GAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGELKTLKYSNDSFENACVEFDEENLK 606

Query: 279  PTYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEINEVIIEMEQFKQDLQKH 100
            PT++ILWG+PGRSNAINIAERLGLP  ++++AR L GTA AEIN +I++ME+FKQ+  + 
Sbjct: 607  PTFRILWGIPGRSNAINIAERLGLPLDIIESARHLLGTAGAEINALIMDMEKFKQEYDEQ 666

Query: 99   VQEADHYLM 73
            +Q+A HYLM
Sbjct: 667  LQQAQHYLM 675


>ref|NP_001065027.2| Os10g0509000 [Oryza sativa Japonica Group]
           gi|255679545|dbj|BAF26941.2| Os10g0509000 [Oryza sativa
           Japonica Group]
          Length = 528

 Score =  400 bits (1029), Expect = e-109
 Identities = 192/308 (62%), Positives = 254/308 (82%)
 Frame = -2

Query: 996 SNDDLTQKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIANIRRRKLQPENNSLKEEP 817
           S+  L++K W L +PNAYHP         L +A+K+V +A A IRRR++  ++N  +++ 
Sbjct: 64  SSAHLSKKAWKLCMPNAYHPLLLQQHQENLHRAKKDVASATAEIRRRRIYGQDNVEEDQL 123

Query: 816 DVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGGKTICLKTIGLAAMMAKSG 637
             +++ +++ V+++EK  P+PVDFF+   T VL+ITGPNTGGKTI LKT+GLA++MAK G
Sbjct: 124 ASDLDLMKIRVSQMEKDRPVPVDFFIAEGTTVLVITGPNTGGKTISLKTVGLASLMAKIG 183

Query: 636 LYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIGAIQALSTCQSLVLLDEVG 457
           LY+L+SEPV+IPWF+++++DIGDEQSL+ SLSTFSGHL+QIGAI+A ST QSLVLLDEVG
Sbjct: 184 LYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSGHLKQIGAIRAWSTSQSLVLLDEVG 243

Query: 456 GGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYSSTGVENACMEFDDINLKP 277
            GTNPLEGAALGMS+LESFAE G+ LT+ATTHHGELKTLKYS+   ENACMEFD+ NLKP
Sbjct: 244 AGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGELKTLKYSNDLFENACMEFDEDNLKP 303

Query: 276 TYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEINEVIIEMEQFKQDLQKHV 97
           T++ILWG+PGRSNAINIAERLGLP+ +++++R+L GTA AEIN +I++ME FKQ  Q H+
Sbjct: 304 TFRILWGIPGRSNAINIAERLGLPSDIIESSRQLLGTAGAEINALIMDMENFKQQYQHHL 363

Query: 96  QEADHYLM 73
           QEA +Y+M
Sbjct: 364 QEAQYYVM 371


>ref|XP_002519605.1| DNA mismatch repair protein muts2, putative [Ricinus communis]
            gi|223541195|gb|EEF42750.1| DNA mismatch repair protein
            muts2, putative [Ricinus communis]
          Length = 491

 Score =  400 bits (1028), Expect = e-109
 Identities = 205/325 (63%), Positives = 254/325 (78%)
 Frame = -2

Query: 1050 KDKDGYFGVEYHTSGTKTSNDDLTQKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIA 871
            +D DG F  E         ++ L +K WILY+  AYHP         L+KA+K+   A +
Sbjct: 71   EDMDGLFTAEASEMRALKGSNPLERK-WILYMRKAYHPLLLQQHRQNLQKAQKDAKKATS 129

Query: 870  NIRRRKLQPENNSLKEEPDVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGG 691
                +KLQ +N   + E D++    E++V+ LE+AHP+PVDF +   +RVL+ITGPNTGG
Sbjct: 130  ----QKLQGDNGMSRGETDLDSSSSEIKVSALEQAHPVPVDFLIAQNSRVLVITGPNTGG 185

Query: 690  KTICLKTIGLAAMMAKSGLYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIG 511
            KTICLKT+GLAAMMAKSGLYVL SE V++PWFD I +DIGDEQSLS SLSTFSGHL+QI 
Sbjct: 186  KTICLKTVGLAAMMAKSGLYVLCSESVQLPWFDYILADIGDEQSLSQSLSTFSGHLKQIS 245

Query: 510  AIQALSTCQSLVLLDEVGGGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYS 331
             I++ ST +SLVLLDEVG GTNPLEGAALGMS+LESFAE GALLTIATTHH ELK+LKYS
Sbjct: 246  DIRSQSTNRSLVLLDEVGAGTNPLEGAALGMSLLESFAEDGALLTIATTHHSELKSLKYS 305

Query: 330  STGVENACMEFDDINLKPTYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEI 151
            ++  ENACMEFD++NLKPTYKI+WGVPGRSNAINI+E+LGLP+ V++ ARELYG ASAEI
Sbjct: 306  NSAFENACMEFDEVNLKPTYKIIWGVPGRSNAINISEKLGLPDRVINIARELYGAASAEI 365

Query: 150  NEVIIEMEQFKQDLQKHVQEADHYL 76
            NEVII+ME+FKQ++Q+ + EA H +
Sbjct: 366  NEVIIDMERFKQEVQELLYEAQHQI 390


>ref|XP_002269872.2| PREDICTED: mutS2 protein-like [Vitis vinifera]
          Length = 791

 Score =  396 bits (1018), Expect = e-108
 Identities = 212/328 (64%), Positives = 248/328 (75%), Gaps = 1/328 (0%)
 Frame = -2

Query: 1017 HTSGTKTSNDDLT-QKEWILYLPNAYHPXXXXXXXXXLKKARKNVTNAIANIRRRKLQPE 841
            H SG  TS      ++EW L+LP AYHP         L+KARK+V+ AI+          
Sbjct: 351  HLSGHGTSEASYPIKREWTLHLPKAYHPLLVQQHRENLQKARKDVSLAIS---------- 400

Query: 840  NNSLKEEPDVNIEYLEMEVAKLEKAHPIPVDFFVDTKTRVLIITGPNTGGKTICLKTIGL 661
                       + Y+      LE++ P+PVDFF+  +TRVL+ITGPNTGGKTICLKT+GL
Sbjct: 401  -----------VSYV------LEQSPPVPVDFFIAQRTRVLVITGPNTGGKTICLKTVGL 443

Query: 660  AAMMAKSGLYVLSSEPVRIPWFDSIFSDIGDEQSLSHSLSTFSGHLRQIGAIQALSTCQS 481
            AAMMA+SGL+VL++EPVRIPWFD +F+DIGDEQSLS SLSTFSGHL+QI  I+A ST QS
Sbjct: 444  AAMMARSGLHVLAAEPVRIPWFDYVFADIGDEQSLSQSLSTFSGHLKQISDIKAQSTNQS 503

Query: 480  LVLLDEVGGGTNPLEGAALGMSILESFAEGGALLTIATTHHGELKTLKYSSTGVENACME 301
            LVLLDEVG GTNPLEGAALGMS+LESFAE GALLTIATTHH ELKTLKYS+   ENACME
Sbjct: 504  LVLLDEVGAGTNPLEGAALGMSLLESFAETGALLTIATTHHSELKTLKYSNDAFENACME 563

Query: 300  FDDINLKPTYKILWGVPGRSNAINIAERLGLPNTVLDNARELYGTASAEINEVIIEMEQF 121
            FD++NLKPTYKILWG+PGRSNAINIAERLG+P  VLD ARE YG ASAEINEVII+ME+F
Sbjct: 564  FDEVNLKPTYKILWGIPGRSNAINIAERLGVPKKVLDKAREQYGAASAEINEVIIDMERF 623

Query: 120  KQDLQKHVQEADHYLM*GLSMD*LHMLL 37
            KQ+ Q+ V +A +YLM  LS D    LL
Sbjct: 624  KQEFQERVNDARYYLM--LSRDLYENLL 649


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