BLASTX nr result

ID: Coptis24_contig00013093 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013093
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003572173.1| PREDICTED: ABC transporter A family member 7...    86   4e-15
ref|XP_003576447.1| PREDICTED: ABC transporter A family member 7...    82   3e-14
ref|XP_002460107.1| hypothetical protein SORBIDRAFT_02g022870 [S...    82   6e-14
tpg|DAA61152.1| TPA: hypothetical protein ZEAMMB73_440352 [Zea m...    78   8e-13
dbj|BAC99368.1| putative ABC transporter [Oryza sativa Japonica ...    77   1e-12

>ref|XP_003572173.1| PREDICTED: ABC transporter A family member 7-like [Brachypodium
           distachyon]
          Length = 954

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 37/68 (54%), Positives = 45/68 (66%)
 Frame = -3

Query: 205 SSRDGKCAKTECGIQYSDSVQAVFCPISKPPTWPVLSTVPQHENRAVRTESIPFSDLPDE 26
           ++ DG C +TECGIQYS   Q   CPI  PP WP +  VP+ E+RA+RT S PF  LPD 
Sbjct: 74  TAADGSCRRTECGIQYSTLDQVASCPIPNPPRWPAVVQVPRPESRAIRTASQPFDGLPDP 133

Query: 25  SCRSIGSC 2
           +CR  GSC
Sbjct: 134 TCRDNGSC 141


>ref|XP_003576447.1| PREDICTED: ABC transporter A family member 7-like [Brachypodium
           distachyon]
          Length = 945

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 42/78 (53%), Positives = 46/78 (58%)
 Frame = -3

Query: 235 YHFIAVCY*ISSRDGKCAKTECGIQYSDSVQAVFCPISKPPTWPVLSTVPQHENRAVRTE 56
           YH    C   ++ DG C K ECGIQYS   Q   C I+ PP WP L  VPQ E RAV+T 
Sbjct: 62  YHCGCACV-ETNLDGSCKKRECGIQYSTLEQVWSCAITSPPRWPALIQVPQPEFRAVKTL 120

Query: 55  SIPFSDLPDESCRSIGSC 2
           S PF DLPD SCR   SC
Sbjct: 121 SQPFDDLPDPSCRDSKSC 138


>ref|XP_002460107.1| hypothetical protein SORBIDRAFT_02g022870 [Sorghum bicolor]
           gi|241923484|gb|EER96628.1| hypothetical protein
           SORBIDRAFT_02g022870 [Sorghum bicolor]
          Length = 910

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 37/68 (54%), Positives = 45/68 (66%)
 Frame = -3

Query: 205 SSRDGKCAKTECGIQYSDSVQAVFCPISKPPTWPVLSTVPQHENRAVRTESIPFSDLPDE 26
           +S DG+CA+ +CGIQYS   Q   CPI  PP WP +  +P+ + RAVRT S PFSDLPD 
Sbjct: 71  TSLDGRCARKQCGIQYSTLDQVGSCPIPSPPQWPAMIQIPRADFRAVRTFSQPFSDLPDP 130

Query: 25  SCRSIGSC 2
            CR   SC
Sbjct: 131 FCRDSWSC 138


>tpg|DAA61152.1| TPA: hypothetical protein ZEAMMB73_440352 [Zea mays]
          Length = 910

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 35/68 (51%), Positives = 43/68 (63%)
 Frame = -3

Query: 205 SSRDGKCAKTECGIQYSDSVQAVFCPISKPPTWPVLSTVPQHENRAVRTESIPFSDLPDE 26
           +S +G+C + ECGIQYS   Q   CPI  PP WP L  +P+ + RA RT S PF+DLPD 
Sbjct: 71  TSANGRCVRKECGIQYSTLDQVGSCPIPSPPQWPALIQIPRADFRAARTFSQPFNDLPDP 130

Query: 25  SCRSIGSC 2
            CR   SC
Sbjct: 131 FCRDSWSC 138


>dbj|BAC99368.1| putative ABC transporter [Oryza sativa Japonica Group]
           gi|37806018|dbj|BAC99430.1| putative ABC transporter
           [Oryza sativa Japonica Group]
          Length = 929

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 34/65 (52%), Positives = 41/65 (63%)
 Frame = -3

Query: 196 DGKCAKTECGIQYSDSVQAVFCPISKPPTWPVLSTVPQHENRAVRTESIPFSDLPDESCR 17
           DG C +TECG+++S   Q   CPI  P  WP L  VP+ E+RAVR  S PF  LPD +CR
Sbjct: 80  DGTCRRTECGVEHSTLDQVGSCPIKSPTPWPALVQVPRPESRAVRIASQPFDGLPDPTCR 139

Query: 16  SIGSC 2
             GSC
Sbjct: 140 DTGSC 144


Top