BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00013023
         (1114 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24922.3| unnamed protein product [Vitis vinifera]              608   e-172
ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis v...   608   e-172
ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|2...   584   e-164
gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum] gi|26984...   582   e-164
ref|XP_001758663.1| predicted protein [Physcomitrella patens sub...   582   e-164

>emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  608 bits (1568), Expect = e-172
 Identities = 296/369 (80%), Positives = 324/369 (87%)
 Frame = +3

Query: 6    KQIMENAEIQNIKQILGLQQGKIYDNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW 185
            KQI+ENAEIQNIKQILGLQQGK YD++KSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW
Sbjct: 494  KQILENAEIQNIKQILGLQQGKEYDSIKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW 553

Query: 186  PSLLKIPSFLLEFITPIVKAAKTTNNKQEVKSFYSMPEYESWKESLGGSTRGWSVKYYKG 365
            PSLLKIPSFL+EFITPIVKA   T+    V SFYSMPEYESWKESLGG+  GWS+KYYKG
Sbjct: 554  PSLLKIPSFLVEFITPIVKA---THRNGRVLSFYSMPEYESWKESLGGNASGWSIKYYKG 610

Query: 366  LGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARKNWLRQFEPGTYLD 545
            LGTST+ EG+EYF DL +HKKDF+W DE+DGDAIE+AFSKKKIE RKNWLRQF+PGTYLD
Sbjct: 611  LGTSTSKEGKEYFKDLGKHKKDFMWVDEKDGDAIELAFSKKKIEERKNWLRQFQPGTYLD 670

Query: 546  SKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSFKRNLVSSIKISQF 725
             KEKLIKY DFVNKELILFS+ADLQRSIPSMVDGLKPGQRKILFCSFKRN +   KI+QF
Sbjct: 671  QKEKLIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKIAQF 730

Query: 726  SGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRIKGGKDAASARYIF 905
            SGYVSEHSAYHHGEQSLASTIIG+AQ+FVGSNNINL  P GQFG+R +GGKD ASARYI+
Sbjct: 731  SGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIY 790

Query: 906  TKLSGITRFLFHKXXXXXXXXXXXXGQPIEPVWYMPIIPLVLVNGSEGIGTGWSTYIPNY 1085
            T+LS ITRFLF K            GQ IEP WY+P IP+VLVNGSEGIGTGWS+ IPNY
Sbjct: 791  TRLSPITRFLFPKDDDILLDYLNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNY 850

Query: 1086 NPRDIVANI 1112
            NPRDI+AN+
Sbjct: 851  NPRDIIANV 859


>ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera]
          Length = 1489

 Score =  608 bits (1568), Expect = e-172
 Identities = 296/369 (80%), Positives = 324/369 (87%)
 Frame = +3

Query: 6    KQIMENAEIQNIKQILGLQQGKIYDNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW 185
            KQI+ENAEIQNIKQILGLQQGK YD++KSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW
Sbjct: 494  KQILENAEIQNIKQILGLQQGKEYDSIKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW 553

Query: 186  PSLLKIPSFLLEFITPIVKAAKTTNNKQEVKSFYSMPEYESWKESLGGSTRGWSVKYYKG 365
            PSLLKIPSFL+EFITPIVKA   T+    V SFYSMPEYESWKESLGG+  GWS+KYYKG
Sbjct: 554  PSLLKIPSFLVEFITPIVKA---THRNGRVLSFYSMPEYESWKESLGGNASGWSIKYYKG 610

Query: 366  LGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARKNWLRQFEPGTYLD 545
            LGTST+ EG+EYF DL +HKKDF+W DE+DGDAIE+AFSKKKIE RKNWLRQF+PGTYLD
Sbjct: 611  LGTSTSKEGKEYFKDLGKHKKDFMWVDEKDGDAIELAFSKKKIEERKNWLRQFQPGTYLD 670

Query: 546  SKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSFKRNLVSSIKISQF 725
             KEKLIKY DFVNKELILFS+ADLQRSIPSMVDGLKPGQRKILFCSFKRN +   KI+QF
Sbjct: 671  QKEKLIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKIAQF 730

Query: 726  SGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRIKGGKDAASARYIF 905
            SGYVSEHSAYHHGEQSLASTIIG+AQ+FVGSNNINL  P GQFG+R +GGKD ASARYI+
Sbjct: 731  SGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIY 790

Query: 906  TKLSGITRFLFHKXXXXXXXXXXXXGQPIEPVWYMPIIPLVLVNGSEGIGTGWSTYIPNY 1085
            T+LS ITRFLF K            GQ IEP WY+P IP+VLVNGSEGIGTGWS+ IPNY
Sbjct: 791  TRLSPITRFLFPKDDDILLDYLNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNY 850

Query: 1086 NPRDIVANI 1112
            NPRDI+AN+
Sbjct: 851  NPRDIIANV 859


>ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|222850454|gb|EEE88001.1|
            predicted protein [Populus trichocarpa]
          Length = 1482

 Score =  584 bits (1505), Expect = e-164
 Identities = 285/369 (77%), Positives = 314/369 (85%)
 Frame = +3

Query: 6    KQIMENAEIQNIKQILGLQQGKIYDNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW 185
            KQ+ EN EI++IK+ILGLQ  K Y NVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW
Sbjct: 494  KQLKENKEIESIKKILGLQHDKQYINVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFW 553

Query: 186  PSLLKIPSFLLEFITPIVKAAKTTNNKQEVKSFYSMPEYESWKESLGGSTRGWSVKYYKG 365
            PSLLK+PSFL+EFITPIVKA   T+    V SFYSMPEYESWKESL G+  GWS+KYYKG
Sbjct: 554  PSLLKVPSFLVEFITPIVKA---THRNGTVLSFYSMPEYESWKESLSGNASGWSIKYYKG 610

Query: 366  LGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARKNWLRQFEPGTYLD 545
            LGTST+ EG++YF +L +HKKDF+W DE DGDAIE+AFSKKKIEARKNWLRQ EPGT+LD
Sbjct: 611  LGTSTSKEGKDYFKNLHKHKKDFLWMDELDGDAIELAFSKKKIEARKNWLRQHEPGTHLD 670

Query: 546  SKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSFKRNLVSSIKISQF 725
              +K+IKY DF+NKELILFS+ADLQRSIPSMVDGLKPGQRKILFCSFKRN V   K+SQF
Sbjct: 671  HNQKIIKYSDFINKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVKEAKVSQF 730

Query: 726  SGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRIKGGKDAASARYIF 905
            SGYVSEHSAYHHGEQSLA TIIG+AQ+FVGSNNINL  P GQFG+R  GGKD ASARYI+
Sbjct: 731  SGYVSEHSAYHHGEQSLAGTIIGMAQDFVGSNNINLLQPNGQFGTRSVGGKDHASARYIY 790

Query: 906  TKLSGITRFLFHKXXXXXXXXXXXXGQPIEPVWYMPIIPLVLVNGSEGIGTGWSTYIPNY 1085
            T+LS ITRFLF K            GQ IEP WYMPIIP VLVNG EGIGTGWST+IPNY
Sbjct: 791  TQLSPITRFLFPKDDDGLLDYLDEDGQTIEPTWYMPIIPTVLVNGCEGIGTGWSTFIPNY 850

Query: 1086 NPRDIVANI 1112
            NPRD+VANI
Sbjct: 851  NPRDVVANI 859


>gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum] gi|26984168|gb|AAN85208.1|
            DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score =  582 bits (1500), Expect = e-164
 Identities = 272/370 (73%), Positives = 320/370 (86%)
 Frame = +3

Query: 3    HKQIMENAEIQNIKQILGLQQGKIYDNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSF 182
            HKQ+ EN EI+ IK+ILGLQ GK YD+VKSLRYGHLMIMTDQDHDGSHIKGLLINFIH+F
Sbjct: 489  HKQVSENKEIEAIKKILGLQTGKEYDSVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHTF 548

Query: 183  WPSLLKIPSFLLEFITPIVKAAKTTNNKQEVKSFYSMPEYESWKESLGGSTRGWSVKYYK 362
            WPSLLK+PSFL+EFITPIVKA   T+   ++ SFY+MPEYESW++SLG ++ GWS+KYYK
Sbjct: 549  WPSLLKVPSFLIEFITPIVKA---THKSGKILSFYTMPEYESWRKSLGANSSGWSIKYYK 605

Query: 363  GLGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARKNWLRQFEPGTYL 542
            GLGTST+ EG+EYF DL +H+KDF+W D +DG++IE+AFSKKKIEARKNWLRQFEPGT+L
Sbjct: 606  GLGTSTSKEGKEYFQDLQKHRKDFIWADNQDGESIELAFSKKKIEARKNWLRQFEPGTHL 665

Query: 543  DSKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSFKRNLVSSIKISQ 722
            D KEK I Y +FVNKELILFS+ADLQRSIPSM+DGLKPGQRKILFC+FKRN V   K+SQ
Sbjct: 666  DQKEKYISYTEFVNKELILFSMADLQRSIPSMLDGLKPGQRKILFCAFKRNFVKEAKVSQ 725

Query: 723  FSGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRIKGGKDAASARYI 902
            FSGYVSEHSAYHHGEQSL+STIIG+AQ++VGSNN+NL  P GQFG+R  GGKD AS+RYI
Sbjct: 726  FSGYVSEHSAYHHGEQSLSSTIIGMAQDYVGSNNVNLLQPNGQFGTRNMGGKDHASSRYI 785

Query: 903  FTKLSGITRFLFHKXXXXXXXXXXXXGQPIEPVWYMPIIPLVLVNGSEGIGTGWSTYIPN 1082
            +T+LS I RFLF K            GQ IEP WY+PI+P+VL+NGSEGIGTGWS+Y+PN
Sbjct: 786  YTRLSPIARFLFPKEDDTIHDYLNEDGQYIEPTWYVPIVPMVLINGSEGIGTGWSSYVPN 845

Query: 1083 YNPRDIVANI 1112
            YNPRD+VAN+
Sbjct: 846  YNPRDLVANV 855


>ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
            gi|162690273|gb|EDQ76641.1| predicted protein
            [Physcomitrella patens subsp. patens]
          Length = 1238

 Score =  582 bits (1499), Expect = e-164
 Identities = 284/370 (76%), Positives = 315/370 (85%)
 Frame = +3

Query: 3    HKQIMENAEIQNIKQILGLQQGKIYDNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSF 182
            HKQIMENAEI NIK+ILGLQ GK YDN KSLRYGHLMIMTDQDHDGSHIKGLLINFIHSF
Sbjct: 495  HKQIMENAEITNIKRILGLQHGKDYDNTKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSF 554

Query: 183  WPSLLKIPSFLLEFITPIVKAAKTTNNKQEVKSFYSMPEYESWKESLGGSTRGWSVKYYK 362
            WPSLLKIPSFL+EFITPIVKA+    NKQ++ SFY+MPEYE+WKESL G T+GW++KYYK
Sbjct: 555  WPSLLKIPSFLVEFITPIVKAS----NKQKMLSFYTMPEYEAWKESLNGETKGWTIKYYK 610

Query: 363  GLGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARKNWLRQFEPGTYL 542
            GLGTST+ EG+EYF +L +HKKDF W  E DGDAIEMAFSKKKIEARK WLR +EPGT+L
Sbjct: 611  GLGTSTSKEGKEYFRELSKHKKDFKWESEMDGDAIEMAFSKKKIEARKTWLRHYEPGTFL 670

Query: 543  DSKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSFKRNLVSSIKISQ 722
            D     IKY DFVNKELILFS+ADL RSIPSMVDGLKPGQRKILFC FKRN V+  K++Q
Sbjct: 671  DMTADKIKYSDFVNKELILFSMADLARSIPSMVDGLKPGQRKILFCCFKRNFVTQAKVAQ 730

Query: 723  FSGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRIKGGKDAASARYI 902
            FSGYVSEHSAYHHGE SLASTIIG+AQNFVGSNNINL +PEGQFG+R +GGK+ AS RYI
Sbjct: 731  FSGYVSEHSAYHHGEASLASTIIGMAQNFVGSNNINLLSPEGQFGTREQGGKNHASPRYI 790

Query: 903  FTKLSGITRFLFHKXXXXXXXXXXXXGQPIEPVWYMPIIPLVLVNGSEGIGTGWSTYIPN 1082
            FT L+ ITR LF +            GQ IEP WY PIIPLVLVNGSEGIGTGWS+++PN
Sbjct: 791  FTCLAPITRALFPQPDDVLLDYMKEDGQSIEPSWYCPIIPLVLVNGSEGIGTGWSSFVPN 850

Query: 1083 YNPRDIVANI 1112
            YNPR+IVANI
Sbjct: 851  YNPREIVANI 860