BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012478
         (3888 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera] ...  1599   0.0  
ref|XP_002520011.1| conserved hypothetical protein [Ricinus comm...  1559   0.0  
ref|NP_001061055.1| Os08g0162100 [Oryza sativa Japonica Group] g...  1519   0.0  
ref|XP_002443908.1| hypothetical protein SORBIDRAFT_07g004180 [S...  1516   0.0  
ref|NP_001167872.2| ramosa 1 enhancer locus 2 [Zea mays] gi|3033...  1508   0.0  

>ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera]
            gi|297737353|emb|CBI26554.3| unnamed protein product
            [Vitis vinifera]
          Length = 1135

 Score = 1599 bits (4141), Expect = 0.0
 Identities = 782/1020 (76%), Positives = 866/1020 (84%), Gaps = 21/1020 (2%)
 Frame = -2

Query: 3350 VKDLKVFASFNEELFKEITQLLTLDNFRKNEQLSKYGDTKTARNIMLLELKKLIEANPLF 3171
            VKDLKVFASFNEELFKEITQLLTL+NFR+NEQLSKYGDTK+AR IML+ELKKLIEANPLF
Sbjct: 98   VKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARGIMLIELKKLIEANPLF 157

Query: 3170 REKLTFPSFKNSRLRTLINQSLNWQHQLCKNPRQNPDIKTLFTDHTCASNNGTRGPPPSN 2991
            R+KLTFP+FK SRLRTLINQSLNWQHQLCKNPR NPDIKTLFTDH C   NG R PPP+N
Sbjct: 158  RDKLTFPAFKASRLRTLINQSLNWQHQLCKNPRSNPDIKTLFTDHACTPTNGARPPPPTN 217

Query: 2990 XXXXXXXXXXXXXXXXXVHSPFQPIVSPSPSAIAGWMSNTNPSXXXXXXXXXXXXXXXXX 2811
                              H+PFQP+VSPSP AIAGWMS+TNPS                 
Sbjct: 218  NPLVGPIPKAGAFPPIGAHNPFQPVVSPSPGAIAGWMSSTNPSLPHAAVAAGPPSLVQPS 277

Query: 2810 XXXXPFLKRPRTPPSGPGMDYQTADSEQLLKRMRSGPSDEVTFSGAGHHSNIYSQEELPK 2631
                 FLK  RTP    GMDYQ+ DSE L+KR+R+G SDEV+FSG  H  N+YSQ++LPK
Sbjct: 278  TAAA-FLKHQRTPTGVTGMDYQSGDSEHLMKRIRTGQSDEVSFSGVAHAPNVYSQDDLPK 336

Query: 2630 IVVRNLNQGSNVMSMDFHPQQQTILLVGTNVGDIAIWEIGSRERIVHQPFKVWDVPARSM 2451
             VVR + QGSNVMSMDFHPQQQT+LLVGTNVGDI++WE+GSRER+ H+PFKVWD+ A SM
Sbjct: 337  SVVRTITQGSNVMSMDFHPQQQTVLLVGTNVGDISLWEVGSRERLAHKPFKVWDISACSM 396

Query: 2450 PFQTTLVKDATISVNRCVWGPDGSVLGVAFSKHIVQTYTYSPTGELRNHLEIDAHIGGVN 2271
            P QT L+KDATISVNRCVWGPDG +LGVAFSKHIVQ YTY+PTGELR HLEIDAHIGGVN
Sbjct: 397  PLQTALLKDATISVNRCVWGPDGLILGVAFSKHIVQIYTYNPTGELRQHLEIDAHIGGVN 456

Query: 2270 DIAFSHPNKQLCIVTCGDDKTIKVWDTASGRRLYTFEGHDAPVYSVCPHYKENIQFIFST 2091
            D+AF+HPNKQLCIVTCGDDKTIKVWD  +GRRLYTFEGH+APVYSVCPHYKENIQFIFST
Sbjct: 457  DVAFAHPNKQLCIVTCGDDKTIKVWDAQTGRRLYTFEGHEAPVYSVCPHYKENIQFIFST 516

Query: 2090 AIDGKIKAWLYDSLGSRVDYDAPGLWCTTMAYSADGTRLFSCGTSKDGESHLVEWNESEG 1911
            AIDGKIKAWLYD LGSRVDYDAPG WCT MAYSADGTRLFSCGTSKDGESHLVEWNESEG
Sbjct: 517  AIDGKIKAWLYDCLGSRVDYDAPGHWCTMMAYSADGTRLFSCGTSKDGESHLVEWNESEG 576

Query: 1910 AVKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNVIASTEADGGLPASPK 1731
            A+KRTY GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN N++ + EA+GGLPASP+
Sbjct: 577  AIKRTYLGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNTNILTAVEAEGGLPASPR 636

Query: 1730 LRFNREGSLLAVTTNDNGIKILGNLDGQRLIRMLESRTFEGSRGPSEPISMKPQIVNALG 1551
            LRFN+EGSLLAVTTNDNGIKIL N DG RL RMLESR  EG RGPSEPI+ KP IVNALG
Sbjct: 637  LRFNKEGSLLAVTTNDNGIKILANNDGLRLTRMLESRPMEGHRGPSEPINSKPLIVNALG 696

Query: 1550 SVANLSTPLPPNVERSDRITPAVSM-------SSRTTDVKPRI--------SWKLPEIVD 1416
              AN+S  + P++ERSDRI PAVS+       SSR  DVKP+I        SWK+P+IVD
Sbjct: 697  PAANVSAAMSPSLERSDRIQPAVSINNLATMDSSRLVDVKPKISDDLEKIKSWKIPDIVD 756

Query: 1415 SSQLKALQLPDPLATGKVLRLIYTNNGLSILALASNAVHKIWKWQRD-----GKATASVV 1251
             SQLKAL+LPDP+ TGKV+RLIYTN+GL++LAL SNAVHK+WKWQR      GK+TA VV
Sbjct: 757  QSQLKALRLPDPVTTGKVVRLIYTNSGLALLALISNAVHKLWKWQRSERNPLGKSTAYVV 816

Query: 1250 PQLWQPANGVLMTNDKNEASPSEESAACIALSNNDSYVMSASGGKVSLFNMMTFKVMTTF 1071
            PQLWQPANG LMTND  + +P EESAACIALS NDSYVMSASGGKVSLFNMMTFKVMTTF
Sbjct: 817  PQLWQPANGTLMTNDTGDNNPPEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTF 876

Query: 1070 MPPPPAASFLAFHPEDNNLIAIGMEDSSIQIYNVRVDEVKSKLKGHQQKITGLAFSQVLN 891
            M PPPAA+FLAFHP+DNN+IAIGMEDS+IQIYNVRVDEVK+KLKGHQ+++TGLAFSQ+LN
Sbjct: 877  MSPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKRVTGLAFSQILN 936

Query: 890  ILVSSGADAQLCVWSVDSWEKRKARFIQAPSGRPGPLVGETKVQFHNDQIHILVAHESQI 711
             LVSSGADAQLCVWS+D WEKRK+RFIQAP+GR  PLVG+TKVQFHNDQ H+LV HESQI
Sbjct: 937  CLVSSGADAQLCVWSIDGWEKRKSRFIQAPAGRSSPLVGDTKVQFHNDQAHLLVVHESQI 996

Query: 710  AVFDSKLECLHSWSPTDALSAPISSATYSCDGLLVYVGFCDGAAGVFDVDSLRLRCRIAP 531
            AV+DSKLEC+ SWSP D+L APISSA YSCD +LVY GF DGA GVFD DSLRLRCRIAP
Sbjct: 997  AVYDSKLECVRSWSPKDSLPAPISSAIYSCDSMLVYAGFGDGAVGVFDADSLRLRCRIAP 1056

Query: 530  SAYI-SPATTSTIYPQVIAAHPSEPNQIALGMSNGAVHVLEPSDAEPKWGGPPSQDNGNL 354
            SAYI SPA +S +YP VIAAHPSEPNQIALGMS+GAVHV+EP+D EPKWGG P QDNG++
Sbjct: 1057 SAYIPSPALSSGVYPLVIAAHPSEPNQIALGMSDGAVHVVEPTDTEPKWGGQPPQDNGSI 1116



 Score =  168 bits (425), Expect(2) = 5e-45
 Identities = 80/89 (89%), Positives = 85/89 (95%)
 Frame = -3

Query: 3679 LDEEKFKDAVHKLEQESGFFFNMKHFEDQVLSGEWDDVEKYLSGFTKVEDNRYSMKIFFE 3500
            LDEEKFK+ VHKLEQESGFFFNMKHFEDQV +GEWD+VE+YL GFTKVEDNRYSMKIFFE
Sbjct: 16   LDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75

Query: 3499 IRKQKYLEALDRQDRPKAVEVLVKDLKVF 3413
            IRKQKYLEALDRQDR KAVE+LVKDLKVF
Sbjct: 76   IRKQKYLEALDRQDRAKAVEILVKDLKVF 104



 Score = 42.7 bits (99), Expect(2) = 5e-45
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -2

Query: 3812 MSSLSRELVFLILQFLDEEKF 3750
            MSSLSRELVFLILQFLDEEKF
Sbjct: 1    MSSLSRELVFLILQFLDEEKF 21


>ref|XP_002520011.1| conserved hypothetical protein [Ricinus communis]
            gi|223540775|gb|EEF42335.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1137

 Score = 1559 bits (4037), Expect = 0.0
 Identities = 767/1020 (75%), Positives = 857/1020 (84%), Gaps = 23/1020 (2%)
 Frame = -2

Query: 3347 KDLKVFASFNEELFKEITQLLTLDNFRKNEQLSKYGDTKTARNIMLLELKKLIEANPLFR 3168
            KDLKVFASFNEELFKEITQLLTLDNFR+NEQLSKYGDTK+ARNIML+ELKKLIEANPLFR
Sbjct: 99   KDLKVFASFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFR 158

Query: 3167 EKLTFPSFKNSRLRTLINQSLNWQHQLCKNPRQNPDIKTLFTDHTCASN--NGTRGPPPS 2994
            +KLTFP+FK+SRLRTLINQSLNWQHQLCKNPR NPDIKTLFTDH+C+ +  NG R PPP+
Sbjct: 159  DKLTFPAFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCSPSTANGARPPPPT 218

Query: 2993 NXXXXXXXXXXXXXXXXXVHSPFQPIVSPSPSAIAGWMSNTNPSXXXXXXXXXXXXXXXX 2814
            N                  H PFQP+VSPSP AIAGWMS+ NPS                
Sbjct: 219  NSPIVGPIPKAGAFPPIGAHGPFQPVVSPSPGAIAGWMSSNNPSLPHPAVAAGPPGLVQP 278

Query: 2813 XXXXXPFLKRPRTPPSGPGMDYQTADSEQLLKRMRSGPSDEVTFSGAGHHSNIYSQEELP 2634
                  FLK PRTP    G+DYQ+ADSE L+KRMR+G SDEV+FSG  H  N+YS ++LP
Sbjct: 279  SSAAA-FLKHPRTPTGMTGIDYQSADSEHLMKRMRTGQSDEVSFSGVAHTPNVYSPDDLP 337

Query: 2633 KIVVRNLNQGSNVMSMDFHPQQQTILLVGTNVGDIAIWEIGSRERIVHQPFKVWDVPARS 2454
            K V+R+L+QGSNVMSMDFHPQQQTILLVGTNVGDI++WE+GSRER+ H+PFKVWD+ A S
Sbjct: 338  KTVMRSLSQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSAAS 397

Query: 2453 MPFQTTLVKDATISVNRCVWGPDGSVLGVAFSKHIVQTYTYSPTGELRNHLEIDAHIGGV 2274
            MP Q  L+ DA ISVNRCVWGPDG +LGVAFSKHIVQ Y Y+PTGELR HLEIDAH+GGV
Sbjct: 398  MPLQAALLNDAAISVNRCVWGPDGLMLGVAFSKHIVQLYAYNPTGELRQHLEIDAHVGGV 457

Query: 2273 NDIAFSHPNKQLCIVTCGDDKTIKVWDTASGRRLYTFEGHDAPVYSVCPHYKENIQFIFS 2094
            NDIAF+HPNKQLCIVTCGDDK IKVWD  +GRR YTFEGH+APVYSVCPHYKENIQFIFS
Sbjct: 458  NDIAFAHPNKQLCIVTCGDDKMIKVWDAVAGRRQYTFEGHEAPVYSVCPHYKENIQFIFS 517

Query: 2093 TAIDGKIKAWLYDSLGSRVDYDAPGLWCTTMAYSADGTRLFSCGTSKDGESHLVEWNESE 1914
            TAIDGKIKAWLYDSLGSRVDYDAPGLWCT MAYSADG+RLFSCGTSK+GESHLVEWNESE
Sbjct: 518  TAIDGKIKAWLYDSLGSRVDYDAPGLWCTMMAYSADGSRLFSCGTSKEGESHLVEWNESE 577

Query: 1913 GAVKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNVIASTEADGGLPASP 1734
            G +KRTYSGFRKRS GVVQFDTTR+RFLAAGDEFQIKFWDMDN N++ + +ADGGLPASP
Sbjct: 578  GTIKRTYSGFRKRSSGVVQFDTTRSRFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASP 637

Query: 1733 KLRFNREGSLLAVTTNDNGIKILGNLDGQRLIRMLESRTFEGSRGPSEPISMKPQIVNAL 1554
            +LRFN+EGSLLAVTT+DNGIKIL N DG RLIRMLESR  + +R PSEPI+ KP IVNAL
Sbjct: 638  RLRFNKEGSLLAVTTSDNGIKILANSDGLRLIRMLESRAIDKNRSPSEPINSKPLIVNAL 697

Query: 1553 GSVANLSTPLPPNVERSDRITPAVSM-------SSRTTDVKPRI--------SWKLPEIV 1419
            G VAN+S+ L   +ER DR+ PAV++       SSR  DVKPRI        SWK+P+IV
Sbjct: 698  GPVANVSSGLATALERVDRMPPAVAISSLGTMDSSRLVDVKPRISDELDKIKSWKIPDIV 757

Query: 1418 DSSQLKALQLPDPLATGKVLRLIYTNNGLSILALASNAVHKIWKWQR-----DGKATASV 1254
            D S LKAL+LPD +ATGKV+RLIYTN+GL++LALASNAVHK+WKWQR      GKATA V
Sbjct: 758  DQSHLKALRLPDSIATGKVVRLIYTNSGLALLALASNAVHKLWKWQRSERNPSGKATAYV 817

Query: 1253 VPQLWQPANGVLMTNDKNEASPSEESAACIALSNNDSYVMSASGGKVSLFNMMTFKVMTT 1074
             PQLWQP +G LMTND +++ P+EESAACIALS NDSYVMSASGGKVSLFNMMTFKVMTT
Sbjct: 818  APQLWQPPSGTLMTNDISDSKPAEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTT 877

Query: 1073 FMPPPPAASFLAFHPEDNNLIAIGMEDSSIQIYNVRVDEVKSKLKGHQQKITGLAFSQVL 894
            FM PPPAA+FLAFHP+DNN+IAIGMEDSS+QIYNVRVDEVK+KLKGHQ +ITGLAFSQ L
Sbjct: 878  FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSQSL 937

Query: 893  NILVSSGADAQLCVWSVDSWEKRKARFIQAPSGRPGPLVGETKVQFHNDQIHILVAHESQ 714
            N+LVSSGADAQLCVWS+D WEK+K+RFIQAP GR  PL GETKVQFHNDQ H+LV HESQ
Sbjct: 938  NVLVSSGADAQLCVWSIDGWEKKKSRFIQAPPGRQSPLAGETKVQFHNDQTHLLVVHESQ 997

Query: 713  IAVFDSKLECLHSWSPTDALSAPISSATYSCDGLLVYVGFCDGAAGVFDVDSLRLRCRIA 534
            IA++DSKLECL SW P D L+API+SA YS DGLLVY GFCDGA GVFD DSLR+RCRIA
Sbjct: 998  IAIYDSKLECLRSWYPKDTLTAPIASAIYSSDGLLVYTGFCDGAVGVFDADSLRVRCRIA 1057

Query: 533  PSAYI-SPATTSTIYPQVIAAHPSEPNQIALGMSNGAVHVLEPSDAEPKWGGPPSQDNGN 357
            PSAYI S    +  YP VIAAHPSEPNQIALGMS+GAVHV+EPSD E KWGGP SQDNG+
Sbjct: 1058 PSAYIPSSVAGNNAYPLVIAAHPSEPNQIALGMSDGAVHVVEPSDVELKWGGPSSQDNGS 1117



 Score =  166 bits (420), Expect(2) = 2e-44
 Identities = 79/89 (88%), Positives = 84/89 (94%)
 Frame = -3

Query: 3679 LDEEKFKDAVHKLEQESGFFFNMKHFEDQVLSGEWDDVEKYLSGFTKVEDNRYSMKIFFE 3500
            LDEEKFK+ VHKLEQESGFFFNMKHFEDQV +GEWD+VE+YL GFTKVEDNRYSMKIFFE
Sbjct: 16   LDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75

Query: 3499 IRKQKYLEALDRQDRPKAVEVLVKDLKVF 3413
            IRKQKYLEALDRQDR KAVE+L KDLKVF
Sbjct: 76   IRKQKYLEALDRQDRAKAVEILCKDLKVF 104



 Score = 42.7 bits (99), Expect(2) = 2e-44
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -2

Query: 3812 MSSLSRELVFLILQFLDEEKF 3750
            MSSLSRELVFLILQFLDEEKF
Sbjct: 1    MSSLSRELVFLILQFLDEEKF 21


>ref|NP_001061055.1| Os08g0162100 [Oryza sativa Japonica Group]
            gi|113623024|dbj|BAF22969.1| Os08g0162100 [Oryza sativa
            Japonica Group] gi|125560238|gb|EAZ05686.1| hypothetical
            protein OsI_27917 [Oryza sativa Indica Group]
            gi|371501278|dbj|BAL44266.1| ASP1 protein [Oryza sativa
            Japonica Group]
          Length = 1133

 Score = 1519 bits (3934), Expect = 0.0
 Identities = 742/1021 (72%), Positives = 850/1021 (83%), Gaps = 24/1021 (2%)
 Frame = -2

Query: 3350 VKDLKVFASFNEELFKEITQLLTLDNFRKNEQLSKYGDTKTARNIMLLELKKLIEANPLF 3171
            VKDLKVFASFNEELFKEITQLLTL+NFR+NEQLSKYGDTK+ARNIML+ELKKLIEANPLF
Sbjct: 98   VKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLF 157

Query: 3170 REKLTFPSFKNSRLRTLINQSLNWQHQLCKNPRQNPDIKTLFTDHTCAS-NNGTRGPPPS 2994
            R+KL FP FK SRLRTLINQSLNWQHQLCKNPR NPDIKTLFTDH+CA+  NG R PPP+
Sbjct: 158  RDKLNFPPFKVSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPA 217

Query: 2993 NXXXXXXXXXXXXXXXXXVHSPFQPIVSPSPSAIAGWMSNTNPSXXXXXXXXXXXXXXXX 2814
            N                  H+PFQP+VSPSP+AIAGWM+N NPS                
Sbjct: 218  NGPLVGPIPKSAAFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQP 277

Query: 2813 XXXXXPFLKRPRTPPSGPGMDYQTADSEQLLKRMRSGPSDEVTFSGAGHHSNIYSQEELP 2634
                  FLK PRTP S P +DYQ+ADSE L+KRMR G  DEV+FSGA H +NIY+Q++LP
Sbjct: 278  PNTAA-FLKHPRTPTSAPAIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLP 336

Query: 2633 KIVVRNLNQGSNVMSMDFHPQQQTILLVGTNVGDIAIWEIGSRERIVHQPFKVWDVPARS 2454
            K VVRNLNQGSNVMS+DFHP QQTILLVGTNVGDI IWE+GSRERI H+ FKVWD+ + +
Sbjct: 337  KQVVRNLNQGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCT 396

Query: 2453 MPFQTTLVKDATISVNRCVWGPDGSVLGVAFSKHIVQTYTYSPTGELRNHLEIDAHIGGV 2274
            +P Q  L+KDA ISVNRC+W PDGS+LGVAFSKHIVQTY +   GELR   EIDAHIGGV
Sbjct: 397  LPLQAALMKDAAISVNRCLWSPDGSILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGV 456

Query: 2273 NDIAFSHPNKQLCIVTCGDDKTIKVWDTASGRRLYTFEGHDAPVYSVCPHYKENIQFIFS 2094
            NDIAFSHPNK L I+TCGDDK IKVWD  +G++ YTFEGH+APVYSVCPHYKE+IQFIFS
Sbjct: 457  NDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFS 516

Query: 2093 TAIDGKIKAWLYDSLGSRVDYDAPGLWCTTMAYSADGTRLFSCGTSKDGESHLVEWNESE 1914
            TAIDGKIKAWLYD LGSRVDYDAPG WCTTMAYSADGTRLFSCGTSKDG+SHLVEWNE+E
Sbjct: 517  TAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETE 576

Query: 1913 GAVKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNVIASTEADGGLPASP 1734
            GA+KRTY+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N++ +T+ DGGLPASP
Sbjct: 577  GAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASP 636

Query: 1733 KLRFNREGSLLAVTTNDNGIKILGNLDGQRLIRMLESRTFEGSRGPSEPISMKPQIVNAL 1554
            +LRFNREGSLLAVT N+NGIKIL N DGQRL+RMLESR +EGSRGP + I+ KP IVN L
Sbjct: 637  RLRFNREGSLLAVTANENGIKILANTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTL 696

Query: 1553 GSVANLSTPLPPNVERSDRITPAVSMS-------SRTTDVKPRI--------SWKLPEIV 1419
            GSV+N+S+P+  N ER DR  P VSMS       SRT DVKPRI        +WKL +I 
Sbjct: 697  GSVSNVSSPMAVNSERPDRALPTVSMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIG 756

Query: 1418 DSSQLKALQLPDPLAT-GKVLRLIYTNNGLSILALASNAVHKIWKWQR-----DGKATAS 1257
            DS  L+AL++PD  AT  KV+RL+YTNNG+++LAL SNAVHK+WKWQR     +GK+TAS
Sbjct: 757  DSGHLRALRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTAS 816

Query: 1256 VVPQLWQPANGVLMTNDKNEASPSEESAACIALSNNDSYVMSASGGKVSLFNMMTFKVMT 1077
              PQ+WQPANG+LM ND ++ +P EE+ ACIALS NDSYVMSASGGKVSLFNMMTFKVMT
Sbjct: 817  FTPQMWQPANGILMANDTSDGNP-EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMT 875

Query: 1076 TFMPPPPAASFLAFHPEDNNLIAIGMEDSSIQIYNVRVDEVKSKLKGHQQKITGLAFSQV 897
            TFM PPPAA+FLAFHP+DNN+IAIGMEDS+IQIYNVRVDEVKSKLKGH +KITGLAFSQ 
Sbjct: 876  TFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQS 935

Query: 896  LNILVSSGADAQLCVWSVDSWEKRKARFIQAPSGRPGPLVGETKVQFHNDQIHILVAHES 717
            +N+LVSSGADAQLC WS+D WEK+K+R+IQ+P+ R G LVG+T+VQFHNDQ HILV HES
Sbjct: 936  MNMLVSSGADAQLCAWSIDGWEKKKSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHES 995

Query: 716  QIAVFDSKLECLHSWSPTDALSAPISSATYSCDGLLVYVGFCDGAAGVFDVDSLRLRCRI 537
            Q+A++D+KLECL SWSP +AL APISSA YSCDGLL+Y GFCDGA GVF+ +SLRLRCRI
Sbjct: 996  QLAIYDAKLECLRSWSPREALPAPISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRI 1055

Query: 536  APSAYISPATTS--TIYPQVIAAHPSEPNQIALGMSNGAVHVLEPSDAEPKWGGPPSQDN 363
            APSAYI P+ +S  ++YP V+AAHP EPNQIA+GMS+GAVHV+EP D++PKWG  P QDN
Sbjct: 1056 APSAYIPPSMSSGGSVYPMVVAAHPLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDN 1115

Query: 362  G 360
            G
Sbjct: 1116 G 1116



 Score =  162 bits (411), Expect(2) = 2e-43
 Identities = 78/89 (87%), Positives = 82/89 (92%)
 Frame = -3

Query: 3679 LDEEKFKDAVHKLEQESGFFFNMKHFEDQVLSGEWDDVEKYLSGFTKVEDNRYSMKIFFE 3500
            LDEEKFK+ VHKLEQES F+FNMKHFED V  GEWD+VEKYLSGFTKVEDNRYSMKIFFE
Sbjct: 16   LDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFE 75

Query: 3499 IRKQKYLEALDRQDRPKAVEVLVKDLKVF 3413
            IRKQKYLEALDR DR KAVE+LVKDLKVF
Sbjct: 76   IRKQKYLEALDRHDRAKAVEILVKDLKVF 104



 Score = 42.7 bits (99), Expect(2) = 2e-43
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -2

Query: 3812 MSSLSRELVFLILQFLDEEKF 3750
            MSSLSRELVFLILQFLDEEKF
Sbjct: 1    MSSLSRELVFLILQFLDEEKF 21


>ref|XP_002443908.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor]
            gi|241940258|gb|EES13403.1| hypothetical protein
            SORBIDRAFT_07g004180 [Sorghum bicolor]
          Length = 1136

 Score = 1516 bits (3925), Expect = 0.0
 Identities = 744/1022 (72%), Positives = 845/1022 (82%), Gaps = 25/1022 (2%)
 Frame = -2

Query: 3350 VKDLKVFASFNEELFKEITQLLTLDNFRKNEQLSKYGDTKTARNIMLLELKKLIEANPLF 3171
            VKDLKVFASFNEELFKEITQLLTL+NFR+NEQLSKYGDTK+ARNIMLLELKKLIEANPLF
Sbjct: 96   VKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLLELKKLIEANPLF 155

Query: 3170 REKLTFPSFKNSRLRTLINQSLNWQHQLCKNPRQNPDIKTLFTDHTCAS-NNGTRGPPPS 2994
            R+KL FP FK SRLRTLINQSLNWQHQLCKNPR NPDIKTLFTDH+CA+  NG R PPP+
Sbjct: 156  RDKLNFPPFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPA 215

Query: 2993 NXXXXXXXXXXXXXXXXXVHSPFQPIVSPSPSAIAGWMSNTNPSXXXXXXXXXXXXXXXX 2814
            N                  H+PFQP+VSPSP+AIAGWM+N NPS                
Sbjct: 216  NGPLVGSIPKSAGFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQA 275

Query: 2813 XXXXXPFLKRPRTPPSGPGMDYQTADSEQLLKRMRSGPSDEVTFSGAGHHSNIYSQEELP 2634
                  FLK PRTP S PG+DYQ+ADSE L+KRMR G  DEV+FSGA H +N+Y+QE+LP
Sbjct: 276  PNTAA-FLKHPRTPTSAPGIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANMYTQEDLP 334

Query: 2633 KIVVRNLNQGSNVMSMDFHPQQQTILLVGTNVGDIAIWEIGSRERIVHQPFKVWDVPARS 2454
            K V R LNQGSNVMS+DFHP QQTILLVGTNVGDIA+WE+GSRERI H+ FKVWD+ + +
Sbjct: 335  KQVSRTLNQGSNVMSLDFHPVQQTILLVGTNVGDIAVWEVGSRERIAHKTFKVWDIGSCT 394

Query: 2453 MPFQTTLVKDATISVNRCVWGPDGSVLGVAFSKHIVQTYTYSPTGELRNHLEIDAHIGGV 2274
            +P Q +L+KDA ISVNRC+W PDG++LGVAFSKHIVQTYT+ P G+LR   EIDAHIGGV
Sbjct: 395  LPLQASLMKDAAISVNRCLWSPDGTILGVAFSKHIVQTYTFVPNGDLRQQAEIDAHIGGV 454

Query: 2273 NDIAFSHPNKQLCIVTCGDDKTIKVWDTASGRRLYTFEGHDAPVYSVCPHYKENIQFIFS 2094
            NDIAFSHPNK L I+TCGDDK IKVWD  +G++ YTFEGH+APVYSVCPHYKE+IQFIFS
Sbjct: 455  NDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFS 514

Query: 2093 TAIDGKIKAWLYDSLGSRVDYDAPGLWCTTMAYSADGTRLFSCGTSKDGESHLVEWNESE 1914
            TAIDGKIKAWLYD LGSRVDYDAPG WCTTMAYSADGTRLFSCGTSK+G+SHLVEWNE+E
Sbjct: 515  TAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKEGDSHLVEWNETE 574

Query: 1913 GAVKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNVIASTEADGGLPASP 1734
            GA+KRTY+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N++ +T+ DGGLPASP
Sbjct: 575  GAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFLVKFWDMDNNNILTTTDCDGGLPASP 634

Query: 1733 KLRFNREGSLLAVTTNDNGIKILGNLDGQRLIRMLESRTFEGSRGPSEPISMKPQIVNAL 1554
            +LRFNREGSLLAVTT+DNGIKIL N DGQRL+RMLESR FEGSRGP + I+ KP IV AL
Sbjct: 635  RLRFNREGSLLAVTTSDNGIKILANTDGQRLLRMLESRAFEGSRGPPQQINTKPPIV-AL 693

Query: 1553 GSVANLSTPLPPNVERSDRITPAVSMS-------SRTTDVKPRI--------SWKLPEIV 1419
            G V+N+S+P+  N ER DRI PAVS S       SRT DVKPRI        +WKL +IV
Sbjct: 694  GPVSNVSSPIAVNAERPDRILPAVSTSGLAPMDPSRTPDVKPRITDESEKVKTWKLADIV 753

Query: 1418 DSSQLKALQLPD-PLATGKVLRLIYTNNGLSILALASNAVHKIWKWQR-----DGKATAS 1257
            D+  L+AL L D      KV+RL+YTNNG+++LAL SNAVHK+WKWQR      GK+TAS
Sbjct: 754  DNGHLRALHLTDTDTNPSKVVRLLYTNNGIALLALGSNAVHKLWKWQRGDRNPSGKSTAS 813

Query: 1256 VVPQLWQPANGVLMTNDKNEASPSEESAACIALSNNDSYVMSASGGKVSLFNMMTFKVMT 1077
            V P LWQPANG+LMTND N+ +P EE+ ACIALS NDSYVMSASGGKVSLFNMMTFKVMT
Sbjct: 814  VAPHLWQPANGILMTNDTNDGNP-EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMT 872

Query: 1076 TFMPPPPAASFLAFHPEDNNLIAIGMEDSSIQIYNVRVDEVKSKLKGHQQKITGLAFSQV 897
            TFM PPPAA+FLAFHP+DNN+IAIGMEDS+IQIYNVR+D+VKSKLKGHQ+KITGLAFSQ 
Sbjct: 873  TFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRIDDVKSKLKGHQKKITGLAFSQS 932

Query: 896  LNILVSSGADAQLCVWSVDSWEKRKARFIQAPSGRPGPLVGETKVQFHNDQIHILVAHES 717
            +N+LVSSGADAQLCVWS+D WEK+K+R+IQ P+ RPG LVG+T+VQFHNDQ H+LV HES
Sbjct: 933  MNVLVSSGADAQLCVWSIDGWEKKKSRYIQPPANRPGTLVGDTRVQFHNDQTHLLVVHES 992

Query: 716  QIAVFDSKLECLHSWSPTDALSAPISSATYSCDGLLVYVGFCDGAAGVFDVDSLRLRCRI 537
            Q+A++D  LECL SWSP DAL APISSA YSCDGLLVY  FCDGA GVF+ +SLRLRCRI
Sbjct: 993  QLAIYDGNLECLRSWSPRDALPAPISSAIYSCDGLLVYAAFCDGAIGVFEAESLRLRCRI 1052

Query: 536  APSAYISP---ATTSTIYPQVIAAHPSEPNQIALGMSNGAVHVLEPSDAEPKWGGPPSQD 366
            APSAYI P   A    +YP V+AAHP EPNQIALGMS+G VHV+EP D +PKWG  P QD
Sbjct: 1053 APSAYIPPSILACAGRVYPLVVAAHPMEPNQIALGMSDGKVHVVEPLDGDPKWGTAPPQD 1112

Query: 365  NG 360
            NG
Sbjct: 1113 NG 1114



 Score =  144 bits (364), Expect = 1e-31
 Identities = 69/78 (88%), Positives = 73/78 (93%)
 Frame = -3

Query: 3646 KLEQESGFFFNMKHFEDQVLSGEWDDVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALD 3467
            +LEQESGF+FNMKHFED V  GEWD+VEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALD
Sbjct: 25   RLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALD 84

Query: 3466 RQDRPKAVEVLVKDLKVF 3413
            R DR KAVE+LVKDLKVF
Sbjct: 85   RHDRAKAVEILVKDLKVF 102


>ref|NP_001167872.2| ramosa 1 enhancer locus 2 [Zea mays] gi|303387473|gb|ADM15670.1|
            ramosa 1 enhancer locus 2 [Zea mays]
            gi|303387475|gb|ADM15671.1| ramosa 1 enhancer locus 2
            [Zea mays] gi|413917313|gb|AFW57245.1| ramosa1 enhancer
            locus2 [Zea mays]
          Length = 1141

 Score = 1508 bits (3904), Expect = 0.0
 Identities = 739/1022 (72%), Positives = 844/1022 (82%), Gaps = 25/1022 (2%)
 Frame = -2

Query: 3350 VKDLKVFASFNEELFKEITQLLTLDNFRKNEQLSKYGDTKTARNIMLLELKKLIEANPLF 3171
            VKDLKVFASFNEELFKEITQLLTL+NFR+NEQLSKYGDTK+ARNIMLLELKKLIEANPLF
Sbjct: 98   VKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLLELKKLIEANPLF 157

Query: 3170 REKLTFPSFKNSRLRTLINQSLNWQHQLCKNPRQNPDIKTLFTDHTCAS-NNGTRGPPPS 2994
            R+KL FP FK SRLRTLINQSLNWQHQLCKNPR NPDIKTLFTDH+CA+  NG R PPP+
Sbjct: 158  RDKLNFPPFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPA 217

Query: 2993 NXXXXXXXXXXXXXXXXXVHSPFQPIVSPSPSAIAGWMSNTNPSXXXXXXXXXXXXXXXX 2814
            N                  H+PFQP+VSPSP+AIAGWM+N NPS                
Sbjct: 218  NGPLGSIPKSAGFPPMGA-HAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQA 276

Query: 2813 XXXXXPFLKRPRTPPSGPGMDYQTADSEQLLKRMRSGPSDEVTFSGAGHHSNIYSQEELP 2634
                  FLK PRTP S PG+DYQ+ADSE L+KRMR G  DEV+FSGA H +N+Y+QE+LP
Sbjct: 277  PNTAA-FLKHPRTPTSAPGIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANMYTQEDLP 335

Query: 2633 KIVVRNLNQGSNVMSMDFHPQQQTILLVGTNVGDIAIWEIGSRERIVHQPFKVWDVPARS 2454
            K V R LNQGSNVMS+DFHP QQTILLVGTNVGDIA+WE+GSRERI H+ FKVWD+ + +
Sbjct: 336  KQVSRTLNQGSNVMSLDFHPVQQTILLVGTNVGDIAVWEVGSRERIAHKTFKVWDIGSCT 395

Query: 2453 MPFQTTLVKDATISVNRCVWGPDGSVLGVAFSKHIVQTYTYSPTGELRNHLEIDAHIGGV 2274
            +P Q +L+KDA +SVNRC+W PDG++LGVAFSKHIVQTYT+ P G+LR   EIDAHIGGV
Sbjct: 396  LPLQASLMKDAAVSVNRCLWSPDGTILGVAFSKHIVQTYTFVPNGDLRQQAEIDAHIGGV 455

Query: 2273 NDIAFSHPNKQLCIVTCGDDKTIKVWDTASGRRLYTFEGHDAPVYSVCPHYKENIQFIFS 2094
            NDIAFSHPNK L I+TCGDDK IKVWD  +G++ YTFEGH+APVYSVCPHYKE+IQFIFS
Sbjct: 456  NDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFS 515

Query: 2093 TAIDGKIKAWLYDSLGSRVDYDAPGLWCTTMAYSADGTRLFSCGTSKDGESHLVEWNESE 1914
            TAIDGKIKAWLYD LGSRVDYDAPG WCTTMAYSADGTRLFSCGTSK+G+SHLVEWNE+E
Sbjct: 516  TAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKEGDSHLVEWNETE 575

Query: 1913 GAVKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNVIASTEADGGLPASP 1734
            GA+KRTY+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N++ +T+ DGGLPASP
Sbjct: 576  GAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFLVKFWDMDNNNILTTTDCDGGLPASP 635

Query: 1733 KLRFNREGSLLAVTTNDNGIKILGNLDGQRLIRMLESRTFEGSRGPSEPISMKPQIVNAL 1554
            +LRFNREGSLLAVTT+DNGIKIL N DGQRL+RMLESR FEGSRGP + I+ KP IV AL
Sbjct: 636  RLRFNREGSLLAVTTSDNGIKILANTDGQRLLRMLESRAFEGSRGPPQQINTKPPIV-AL 694

Query: 1553 GSVANLSTPLPPNVERSDRITPAVSMS-------SRTTDVKPRI--------SWKLPEIV 1419
            G V+N+S+P+  N ER DRI PAVS S       SRT DVKPRI        +WKL +IV
Sbjct: 695  GPVSNVSSPIAVNAERPDRILPAVSTSGLAPMDASRTPDVKPRITDESEKVKTWKLADIV 754

Query: 1418 DSSQLKALQLPD-PLATGKVLRLIYTNNGLSILALASNAVHKIWKWQR-----DGKATAS 1257
            D+  L+AL L D      K++RL+YTNNG+++LAL SNAVHK+WKWQR      GK+TAS
Sbjct: 755  DNGHLRALHLTDTDTNPSKIVRLLYTNNGVALLALGSNAVHKLWKWQRSDRNPSGKSTAS 814

Query: 1256 VVPQLWQPANGVLMTNDKNEASPSEESAACIALSNNDSYVMSASGGKVSLFNMMTFKVMT 1077
            V P LWQPANG+LMTND N+ +P EE+ ACIALS NDSYVMSASGGKVSLFNMMTFKVMT
Sbjct: 815  VAPHLWQPANGILMTNDTNDGNP-EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMT 873

Query: 1076 TFMPPPPAASFLAFHPEDNNLIAIGMEDSSIQIYNVRVDEVKSKLKGHQQKITGLAFSQV 897
            TFM PPPAA+FLAFHP+DNN+IAIGMEDS+IQIYNVR+D+VKSKLKGHQ+KITGLAFSQ 
Sbjct: 874  TFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRIDDVKSKLKGHQKKITGLAFSQS 933

Query: 896  LNILVSSGADAQLCVWSVDSWEKRKARFIQAPSGRPGPLVGETKVQFHNDQIHILVAHES 717
            +N+LVSSGADAQLCVWS+D WEK+K+R+IQ P+ RPG LVG+T+VQFHNDQ H+LV HES
Sbjct: 934  MNVLVSSGADAQLCVWSIDGWEKKKSRYIQPPANRPGTLVGDTRVQFHNDQTHLLVVHES 993

Query: 716  QIAVFDSKLECLHSWSPTDALSAPISSATYSCDGLLVYVGFCDGAAGVFDVDSLRLRCRI 537
            Q+ ++D  L+CL  WSP DAL APISSA YSCDGLLVY GFCDGA GVF+ +SLRLRCRI
Sbjct: 994  QLGIYDGNLDCLRLWSPRDALPAPISSAIYSCDGLLVYAGFCDGAIGVFEAESLRLRCRI 1053

Query: 536  APSAYISP---ATTSTIYPQVIAAHPSEPNQIALGMSNGAVHVLEPSDAEPKWGGPPSQD 366
            APSAYI P   A    +YP V+AAHP EPNQIA+GMS+G VHV+EP D +PKWG  P QD
Sbjct: 1054 APSAYIPPSILACAGRVYPLVVAAHPMEPNQIAIGMSDGKVHVVEPLDGDPKWGSAPPQD 1113

Query: 365  NG 360
            NG
Sbjct: 1114 NG 1115



 Score =  165 bits (417), Expect(2) = 4e-44
 Identities = 79/89 (88%), Positives = 83/89 (93%)
 Frame = -3

Query: 3679 LDEEKFKDAVHKLEQESGFFFNMKHFEDQVLSGEWDDVEKYLSGFTKVEDNRYSMKIFFE 3500
            LDEEKFK+ VHKLEQESGF+FNMKHFED V  GEWD+VEKYLSGFTKVEDNRYSMKIFFE
Sbjct: 16   LDEEKFKETVHKLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFE 75

Query: 3499 IRKQKYLEALDRQDRPKAVEVLVKDLKVF 3413
            IRKQKYLEALDR DR KAVE+LVKDLKVF
Sbjct: 76   IRKQKYLEALDRHDRAKAVEILVKDLKVF 104



 Score = 42.7 bits (99), Expect(2) = 4e-44
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -2

Query: 3812 MSSLSRELVFLILQFLDEEKF 3750
            MSSLSRELVFLILQFLDEEKF
Sbjct: 1    MSSLSRELVFLILQFLDEEKF 21