BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012469
         (1773 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317447.1| predicted protein [Populus trichocarpa] gi|2...   434   e-119
dbj|BAF03493.1| Ku70 homolog [Populus nigra]                          433   e-119
ref|XP_002267875.1| PREDICTED: ATP-dependent DNA helicase 2 subu...   419   e-115
ref|XP_002521532.1| ku P70 DNA helicase, putative [Ricinus commu...   415   e-113
ref|XP_003557466.1| PREDICTED: ATP-dependent DNA helicase 2 subu...   412   e-112

>ref|XP_002317447.1| predicted protein [Populus trichocarpa] gi|222860512|gb|EEE98059.1|
           predicted protein [Populus trichocarpa]
          Length = 628

 Score =  434 bits (1117), Expect = e-119
 Identities = 217/290 (74%), Positives = 249/290 (85%), Gaps = 1/290 (0%)
 Frame = -2

Query: 983 QGRDYNKEMIVYLIDASPKMFT-LIPKSDGQEENHFHIAVNCICQSLKTQIIGRSYDEVA 807
           Q R+ +KE +VYL+DASPKMF+   P  DG+EE HFHIA++CI QSLKTQII RSYDEVA
Sbjct: 22  QQRESSKEFVVYLVDASPKMFSSTCPSEDGKEETHFHIAISCIAQSLKTQIINRSYDEVA 81

Query: 806 ICFYNTREKKNLQDLSGVYVFNVAEREDLDKPTARLIKEFDSIEETFMNAIGSQYGIISG 627
           ICF+NTREKKNLQDL+G +VFNVAERE LD+PTARLIK+FD IEE+F   IGSQYGI+SG
Sbjct: 82  ICFFNTREKKNLQDLNGAFVFNVAEREYLDRPTARLIKDFDCIEESFTKDIGSQYGIVSG 141

Query: 626 SRENSLYNALWAAQALLRKGSAKTSDKRMLLFTNEDDPFGSIRGGTKADMIRTTLQRAKD 447
           SRENSLYNALW AQALLRKGSAKT+DKR+LLFTNEDDPFGSI+G  KADM RTTLQRAKD
Sbjct: 142 SRENSLYNALWIAQALLRKGSAKTADKRILLFTNEDDPFGSIKGVAKADMTRTTLQRAKD 201

Query: 446 AQDLGISVELLPLSRPDEEFGVSTFYADLIGLEGEDLALFIPSAGERLEDMKDQLXXXXX 267
           AQDLGIS+ELLPLS+PDEEF VS FY+DLIGLEG++LA F+PSAG++L+DMKDQL     
Sbjct: 202 AQDLGISIELLPLSQPDEEFNVSLFYSDLIGLEGDELAQFMPSAGQKLQDMKDQLRKRMF 261

Query: 266 XXXXXXRITFSLVNGVSIEVNTYALIRPTLPGAVTWLDSVTNLPLKVSIS 117
                 RIT S+ NG+SIE+NTYALIRPTLPGA+TWLDSV+N PLK   S
Sbjct: 262 TKRIVRRITLSIANGLSIELNTYALIRPTLPGAITWLDSVSNRPLKTERS 311


>dbj|BAF03493.1| Ku70 homolog [Populus nigra]
          Length = 627

 Score =  433 bits (1113), Expect = e-119
 Identities = 217/290 (74%), Positives = 248/290 (85%), Gaps = 1/290 (0%)
 Frame = -2

Query: 983 QGRDYNKEMIVYLIDASPKMFT-LIPKSDGQEENHFHIAVNCICQSLKTQIIGRSYDEVA 807
           Q R+ +KE +VYL+DASPKMF+   P  DG+EE HF IA++CI QSLKTQII RSYDEVA
Sbjct: 22  QQRESSKEFVVYLVDASPKMFSSTCPSEDGKEETHFQIAISCIAQSLKTQIINRSYDEVA 81

Query: 806 ICFYNTREKKNLQDLSGVYVFNVAEREDLDKPTARLIKEFDSIEETFMNAIGSQYGIISG 627
           ICF+NTREKKNLQDL+G +VFNVAERE LD+PTARLIK+FD IEE+F   IGSQYGI+SG
Sbjct: 82  ICFFNTREKKNLQDLNGAFVFNVAEREYLDRPTARLIKDFDCIEESFTKDIGSQYGIVSG 141

Query: 626 SRENSLYNALWAAQALLRKGSAKTSDKRMLLFTNEDDPFGSIRGGTKADMIRTTLQRAKD 447
           SRENSLYNALW AQALLRKGSAKT+DKR+LLFTNEDDPFGSI+G  KADM RTTLQRAKD
Sbjct: 142 SRENSLYNALWIAQALLRKGSAKTADKRILLFTNEDDPFGSIKGVAKADMTRTTLQRAKD 201

Query: 446 AQDLGISVELLPLSRPDEEFGVSTFYADLIGLEGEDLALFIPSAGERLEDMKDQLXXXXX 267
           AQDLGIS+ELLPLS+PDEEF VS FY+DLIGLEG++LA F+PSAG++L+DMKDQL     
Sbjct: 202 AQDLGISIELLPLSQPDEEFNVSLFYSDLIGLEGDELAQFMPSAGQKLQDMKDQLRKRMF 261

Query: 266 XXXXXXRITFSLVNGVSIEVNTYALIRPTLPGAVTWLDSVTNLPLKVSIS 117
                 RIT S+ NG+SIE+NTYALIRPTLPGA+TWLDSVTN PLK   S
Sbjct: 262 TKRIVRRITLSIANGLSIELNTYALIRPTLPGAITWLDSVTNRPLKTERS 311


>ref|XP_002267875.1| PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 [Vitis
           vinifera] gi|296089629|emb|CBI39448.3| unnamed protein
           product [Vitis vinifera]
          Length = 623

 Score =  419 bits (1078), Expect = e-115
 Identities = 214/284 (75%), Positives = 238/284 (83%), Gaps = 1/284 (0%)
 Frame = -2

Query: 965 KEMIVYLIDASPKMF-TLIPKSDGQEENHFHIAVNCICQSLKTQIIGRSYDEVAICFYNT 789
           KE +VYL+DASPKMF T     D ++E  FH AV+CI QSLKTQII  S DEVAICF+NT
Sbjct: 26  KEFVVYLVDASPKMFSTTFQGEDQKDETPFHAAVSCISQSLKTQIINNSNDEVAICFFNT 85

Query: 788 REKKNLQDLSGVYVFNVAEREDLDKPTARLIKEFDSIEETFMNAIGSQYGIISGSRENSL 609
           REKKNLQDL+GV+VFNVAERE LD+PTARLIKEFD IEE FM  IGSQYGI+SGSRENSL
Sbjct: 86  REKKNLQDLNGVFVFNVAEREYLDRPTARLIKEFDRIEELFMKEIGSQYGIMSGSRENSL 145

Query: 608 YNALWAAQALLRKGSAKTSDKRMLLFTNEDDPFGSIRGGTKADMIRTTLQRAKDAQDLGI 429
           YNALWAAQALLRKGSAKT+DKR+LLFTNEDDPFGSI G TK DM RTTLQRAKD QDLGI
Sbjct: 146 YNALWAAQALLRKGSAKTADKRILLFTNEDDPFGSITGATKMDMTRTTLQRAKDTQDLGI 205

Query: 428 SVELLPLSRPDEEFGVSTFYADLIGLEGEDLALFIPSAGERLEDMKDQLXXXXXXXXXXX 249
           S+ELLPLS PDEEF VS FYADLIGLEG+DLALF+PS G++L DMK+QL           
Sbjct: 206 SIELLPLSCPDEEFNVSAFYADLIGLEGDDLALFMPSVGDKLTDMKNQLRKRMFKKRVVR 265

Query: 248 RITFSLVNGVSIEVNTYALIRPTLPGAVTWLDSVTNLPLKVSIS 117
           RITFS+V G+SIE+NTYALIRPT+PG +TWLDS+TNLPLK   S
Sbjct: 266 RITFSIVKGLSIELNTYALIRPTVPGTITWLDSITNLPLKTERS 309


>ref|XP_002521532.1| ku P70 DNA helicase, putative [Ricinus communis]
           gi|223539210|gb|EEF40803.1| ku P70 DNA helicase,
           putative [Ricinus communis]
          Length = 626

 Score =  415 bits (1067), Expect = e-113
 Identities = 209/290 (72%), Positives = 243/290 (83%), Gaps = 1/290 (0%)
 Frame = -2

Query: 983 QGRDYNKEMIVYLIDASPKMFTL-IPKSDGQEENHFHIAVNCICQSLKTQIIGRSYDEVA 807
           Q R+ +KE +VYL+DASPKMFT   P  D ++E HFHIAV+ I QSLKTQII RSYDEVA
Sbjct: 22  QQRESSKEFVVYLVDASPKMFTTTFPAEDQKDETHFHIAVSSIAQSLKTQIINRSYDEVA 81

Query: 806 ICFYNTREKKNLQDLSGVYVFNVAEREDLDKPTARLIKEFDSIEETFMNAIGSQYGIISG 627
           ICF+NTREK+NLQDL+GV+V+NVAERE LD+PTARLIK+FD IEE+FM  IGSQYGI+SG
Sbjct: 82  ICFFNTREKRNLQDLNGVFVYNVAEREYLDRPTARLIKDFDCIEESFMKEIGSQYGIVSG 141

Query: 626 SRENSLYNALWAAQALLRKGSAKTSDKRMLLFTNEDDPFGSIRGGTKADMIRTTLQRAKD 447
           SRENSLYNALW AQALLRKGSAKT+DKR+LL TNEDDPFGS++G  K DM RTTLQRAKD
Sbjct: 142 SRENSLYNALWVAQALLRKGSAKTADKRILLLTNEDDPFGSMQGAAKTDMTRTTLQRAKD 201

Query: 446 AQDLGISVELLPLSRPDEEFGVSTFYADLIGLEGEDLALFIPSAGERLEDMKDQLXXXXX 267
           AQDLGIS+ELLPLS+PDEEF +S FYA LIGLEG++LA F+PSAG++LEDMKDQL     
Sbjct: 202 AQDLGISIELLPLSQPDEEFHISLFYAGLIGLEGDELAQFVPSAGQKLEDMKDQLRKRMF 261

Query: 266 XXXXXXRITFSLVNGVSIEVNTYALIRPTLPGAVTWLDSVTNLPLKVSIS 117
                 +IT   + G+SI++NTYALIRPT PGA+TWLDSVTN PLK   S
Sbjct: 262 TKRIVRKITL-FIAGLSIDLNTYALIRPTTPGAITWLDSVTNRPLKTERS 310


>ref|XP_003557466.1| PREDICTED: ATP-dependent DNA helicase 2 subunit KU70-like
           [Brachypodium distachyon]
          Length = 626

 Score =  412 bits (1060), Expect = e-112
 Identities = 205/302 (67%), Positives = 244/302 (80%), Gaps = 2/302 (0%)
 Frame = -2

Query: 986 LQGRDYNKEMIVYLIDASPKMFT--LIPKSDGQEENHFHIAVNCICQSLKTQIIGRSYDE 813
           L  R+ NKEM+VYLIDASPKMFT     +SD ++E HFH  VNCI QSLKTQIIGRS+DE
Sbjct: 20  LHEREANKEMVVYLIDASPKMFTPATTAQSDEKQETHFHTIVNCITQSLKTQIIGRSHDE 79

Query: 812 VAICFYNTREKKNLQDLSGVYVFNVAEREDLDKPTARLIKEFDSIEETFMNAIGSQYGII 633
           V+ICF+NT+EKKNLQDL+GVYV+NV ERE LD+P ARLIKEF  IE++FMN IGS+YGI 
Sbjct: 80  VSICFFNTKEKKNLQDLAGVYVYNVTEREPLDRPDARLIKEFSCIEDSFMNNIGSRYGIT 139

Query: 632 SGSRENSLYNALWAAQALLRKGSAKTSDKRMLLFTNEDDPFGSIRGGTKADMIRTTLQRA 453
           SGSREN+LYNALW AQALLRKGS KT  KR+L+FTNEDDPFG I G  K DMIRTT+QRA
Sbjct: 140 SGSRENTLYNALWVAQALLRKGSVKTVVKRILIFTNEDDPFGGITGAAKTDMIRTTIQRA 199

Query: 452 KDAQDLGISVELLPLSRPDEEFGVSTFYADLIGLEGEDLALFIPSAGERLEDMKDQLXXX 273
           KDAQDLG+S+ELLPLSRPDE+F +S FYADLIGLEG+D+  ++PSAG++LEDM +QL   
Sbjct: 200 KDAQDLGLSIELLPLSRPDEDFNMSLFYADLIGLEGDDIVQYVPSAGDKLEDMTNQLRKR 259

Query: 272 XXXXXXXXRITFSLVNGVSIEVNTYALIRPTLPGAVTWLDSVTNLPLKVSIS*SFFTLNN 93
                    + F++ N V IEVNTYALIRPT+PGA+TWLDS++NLPLK   S   F  N+
Sbjct: 260 MMKKRKVKTLAFAITNDVCIEVNTYALIRPTVPGAITWLDSISNLPLKAERS---FICND 316

Query: 92  SG 87
           +G
Sbjct: 317 TG 318