BLASTX nr result
ID: Coptis24_contig00012442
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00012442
(615 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282506.1| PREDICTED: ubiquitin-associated domain-conta... 190 1e-60
ref|NP_191233.1| Ubiquitin-associated (UBA) protein [Arabidopsis... 173 7e-57
ref|XP_002876380.1| ubiquitin-associated /TS-N domain-containing... 171 1e-55
ref|XP_002307981.1| predicted protein [Populus trichocarpa] gi|2... 169 5e-55
ref|XP_003554120.1| PREDICTED: uncharacterized protein LOC100805... 167 8e-55
>ref|XP_002282506.1| PREDICTED: ubiquitin-associated domain-containing protein 2 isoform
1 [Vitis vinifera] gi|297741648|emb|CBI32780.3| unnamed
protein product [Vitis vinifera]
Length = 294
Score = 190 bits (482), Expect(2) = 1e-60
Identities = 90/128 (70%), Positives = 104/128 (81%)
Frame = +1
Query: 1 SLNMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSIL 180
+LN+L SGPYGLIFSSFVPFYFDIP+STR+ +FGI F+DKSF+YLAGLQLL SS KRSIL
Sbjct: 114 TLNLLTSGPYGLIFSSFVPFYFDIPISTRYRVFGIQFTDKSFIYLAGLQLLLSSWKRSIL 173
Query: 181 PDICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYT 360
P ICG+ A LYR N F I +KFPEF+SSFFSRL P G SS +A RN++GN PSY
Sbjct: 174 PGICGILAGSLYRLNFFHIRKMKFPEFISSFFSRLSSPATGSSSTAAPSRNILGNAPSYA 233
Query: 361 GREVEGNY 384
GR+VEGNY
Sbjct: 234 GRQVEGNY 241
Score = 69.3 bits (168), Expect(2) = 1e-60
Identities = 35/48 (72%), Positives = 41/48 (85%), Gaps = 4/48 (8%)
Frame = +3
Query: 402 ASTVEPSDNSIATLVSMGFDRNSARQ----PRNDINVATNILLEAQSH 533
A+T+EP +++IATLVSMGFDRNSARQ RND+N ATNILLEAQSH
Sbjct: 247 AATIEPPEDAIATLVSMGFDRNSARQALVHARNDVNAATNILLEAQSH 294
>ref|NP_191233.1| Ubiquitin-associated (UBA) protein [Arabidopsis thaliana]
gi|9662993|emb|CAC00737.1| putative protein [Arabidopsis
thaliana] gi|21553945|gb|AAM63026.1| unknown
[Arabidopsis thaliana] gi|28950711|gb|AAO63279.1|
At3g56740 [Arabidopsis thaliana]
gi|110735889|dbj|BAE99920.1| hypothetical protein
[Arabidopsis thaliana] gi|332646039|gb|AEE79560.1|
Ubiquitin-associated (UBA) protein [Arabidopsis
thaliana]
Length = 293
Score = 173 bits (439), Expect(2) = 7e-57
Identities = 82/123 (66%), Positives = 95/123 (77%)
Frame = +1
Query: 7 NMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSILPD 186
N+L SGPYGLIF+SF+PFY DIPVSTRF +FG+NFSDKSF+YLAG+QLL SS KRSI P
Sbjct: 116 NLLTSGPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSFIYLAGVQLLLSSWKRSIFPG 175
Query: 187 ICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYTGR 366
ICG+ A LYR NI GI KFPEFV+SFFSRL +P+ G S P A RN++G I TGR
Sbjct: 176 ICGIIAGSLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPSRNIVGTISPNTGR 235
Query: 367 EVE 375
E
Sbjct: 236 RAE 238
Score = 73.2 bits (178), Expect(2) = 7e-57
Identities = 38/54 (70%), Positives = 43/54 (79%), Gaps = 4/54 (7%)
Frame = +3
Query: 384 SSAAPLASTVEPSDNSIATLVSMGFDRNSARQ----PRNDINVATNILLEAQSH 533
S APL S+VEPS+ +I TLVSMGFDRN+ARQ RND+N ATNILLEAQSH
Sbjct: 240 SQPAPLPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLEAQSH 293
>ref|XP_002876380.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis
lyrata subsp. lyrata] gi|297322218|gb|EFH52639.1|
ubiquitin-associated /TS-N domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 293
Score = 171 bits (432), Expect(2) = 1e-55
Identities = 81/123 (65%), Positives = 94/123 (76%)
Frame = +1
Query: 7 NMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSILPD 186
N+L SGPYGLIF+SF+PFY DIPVSTRF +FG+NFSDKS +YLAG+QLL SS KRSI P
Sbjct: 116 NLLTSGPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSLIYLAGVQLLLSSWKRSIFPG 175
Query: 187 ICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYTGR 366
ICG+ A LYR NI GI KFPEFV+SFFSRL +P+ G S P A RN++G I TGR
Sbjct: 176 ICGIIAGPLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPSRNIVGTISPNTGR 235
Query: 367 EVE 375
E
Sbjct: 236 RAE 238
Score = 72.0 bits (175), Expect(2) = 1e-55
Identities = 37/54 (68%), Positives = 43/54 (79%), Gaps = 4/54 (7%)
Frame = +3
Query: 384 SSAAPLASTVEPSDNSIATLVSMGFDRNSARQ----PRNDINVATNILLEAQSH 533
S AP+ S+VEPS+ +I TLVSMGFDRN+ARQ RND+N ATNILLEAQSH
Sbjct: 240 SQPAPVPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLEAQSH 293
>ref|XP_002307981.1| predicted protein [Populus trichocarpa] gi|222853957|gb|EEE91504.1|
predicted protein [Populus trichocarpa]
Length = 290
Score = 169 bits (428), Expect(2) = 5e-55
Identities = 81/120 (67%), Positives = 96/120 (80%)
Frame = +1
Query: 7 NMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSILPD 186
N+L SGPYGLIF+S+VPFYFDIPVSTRF + G++ SDKSF+YLAG+QLL SS KRSILP
Sbjct: 116 NLLTSGPYGLIFASYVPFYFDIPVSTRFRVVGVHLSDKSFIYLAGVQLLLSSWKRSILPG 175
Query: 187 ICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYTGR 366
ICG+ A LYR N+FGI KFPEF++SFFSRL WP+ GS A+ RNV G+ PSY GR
Sbjct: 176 ICGILAGSLYRLNLFGIRKAKFPEFIASFFSRLSWPST-GSPRGATSRNVTGSAPSYAGR 234
Score = 71.2 bits (173), Expect(2) = 5e-55
Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 4/51 (7%)
Frame = +3
Query: 393 APLASTVEPSDNSIATLVSMGFDRNSAR----QPRNDINVATNILLEAQSH 533
AP+A + EPS+++IATL SMGFDRNSAR Q RND+N ATNILLEAQSH
Sbjct: 240 APMAPSTEPSEDAIATLASMGFDRNSARQALVQARNDVNTATNILLEAQSH 290
>ref|XP_003554120.1| PREDICTED: uncharacterized protein LOC100805217 isoform 1 [Glycine
max]
Length = 293
Score = 167 bits (422), Expect(2) = 8e-55
Identities = 78/126 (61%), Positives = 97/126 (76%)
Frame = +1
Query: 7 NMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSILPD 186
N++ GPYGLIF+SF+PF+FDIPVSTRF +F FSDKSF+YLAGLQLL SS KRSILP
Sbjct: 116 NLVTPGPYGLIFASFLPFFFDIPVSTRFRVFSFLFSDKSFIYLAGLQLLLSSWKRSILPG 175
Query: 187 ICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYTGR 366
+CG+ A LYR N+F I KFPE +SSFFSR+ P++G +S RNV+GN+PSY R
Sbjct: 176 MCGILAGSLYRLNVFYIRKAKFPEMISSFFSRILLPSMGSPRAPSSARNVVGNLPSYPAR 235
Query: 367 EVEGNY 384
++E NY
Sbjct: 236 QMERNY 241
Score = 72.8 bits (177), Expect(2) = 8e-55
Identities = 37/51 (72%), Positives = 43/51 (84%), Gaps = 4/51 (7%)
Frame = +3
Query: 393 APLASTVEPSDNSIATLVSMGFDRNSAR----QPRNDINVATNILLEAQSH 533
AP+ + VEP+++SI TLVSMGFDRNSAR Q RND+NVATNILLEAQSH
Sbjct: 243 APMQAAVEPTEDSITTLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH 293