BLASTX nr result

ID: Coptis24_contig00012442 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012442
         (615 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282506.1| PREDICTED: ubiquitin-associated domain-conta...   190   1e-60
ref|NP_191233.1| Ubiquitin-associated (UBA) protein [Arabidopsis...   173   7e-57
ref|XP_002876380.1| ubiquitin-associated /TS-N domain-containing...   171   1e-55
ref|XP_002307981.1| predicted protein [Populus trichocarpa] gi|2...   169   5e-55
ref|XP_003554120.1| PREDICTED: uncharacterized protein LOC100805...   167   8e-55

>ref|XP_002282506.1| PREDICTED: ubiquitin-associated domain-containing protein 2 isoform
           1 [Vitis vinifera] gi|297741648|emb|CBI32780.3| unnamed
           protein product [Vitis vinifera]
          Length = 294

 Score =  190 bits (482), Expect(2) = 1e-60
 Identities = 90/128 (70%), Positives = 104/128 (81%)
 Frame = +1

Query: 1   SLNMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSIL 180
           +LN+L SGPYGLIFSSFVPFYFDIP+STR+ +FGI F+DKSF+YLAGLQLL SS KRSIL
Sbjct: 114 TLNLLTSGPYGLIFSSFVPFYFDIPISTRYRVFGIQFTDKSFIYLAGLQLLLSSWKRSIL 173

Query: 181 PDICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYT 360
           P ICG+ A  LYR N F I  +KFPEF+SSFFSRL  P  G SS +A  RN++GN PSY 
Sbjct: 174 PGICGILAGSLYRLNFFHIRKMKFPEFISSFFSRLSSPATGSSSTAAPSRNILGNAPSYA 233

Query: 361 GREVEGNY 384
           GR+VEGNY
Sbjct: 234 GRQVEGNY 241



 Score = 69.3 bits (168), Expect(2) = 1e-60
 Identities = 35/48 (72%), Positives = 41/48 (85%), Gaps = 4/48 (8%)
 Frame = +3

Query: 402 ASTVEPSDNSIATLVSMGFDRNSARQ----PRNDINVATNILLEAQSH 533
           A+T+EP +++IATLVSMGFDRNSARQ     RND+N ATNILLEAQSH
Sbjct: 247 AATIEPPEDAIATLVSMGFDRNSARQALVHARNDVNAATNILLEAQSH 294


>ref|NP_191233.1| Ubiquitin-associated (UBA) protein [Arabidopsis thaliana]
           gi|9662993|emb|CAC00737.1| putative protein [Arabidopsis
           thaliana] gi|21553945|gb|AAM63026.1| unknown
           [Arabidopsis thaliana] gi|28950711|gb|AAO63279.1|
           At3g56740 [Arabidopsis thaliana]
           gi|110735889|dbj|BAE99920.1| hypothetical protein
           [Arabidopsis thaliana] gi|332646039|gb|AEE79560.1|
           Ubiquitin-associated (UBA) protein [Arabidopsis
           thaliana]
          Length = 293

 Score =  173 bits (439), Expect(2) = 7e-57
 Identities = 82/123 (66%), Positives = 95/123 (77%)
 Frame = +1

Query: 7   NMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSILPD 186
           N+L SGPYGLIF+SF+PFY DIPVSTRF +FG+NFSDKSF+YLAG+QLL SS KRSI P 
Sbjct: 116 NLLTSGPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSFIYLAGVQLLLSSWKRSIFPG 175

Query: 187 ICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYTGR 366
           ICG+ A  LYR NI GI   KFPEFV+SFFSRL +P+ G S P A  RN++G I   TGR
Sbjct: 176 ICGIIAGSLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPSRNIVGTISPNTGR 235

Query: 367 EVE 375
             E
Sbjct: 236 RAE 238



 Score = 73.2 bits (178), Expect(2) = 7e-57
 Identities = 38/54 (70%), Positives = 43/54 (79%), Gaps = 4/54 (7%)
 Frame = +3

Query: 384 SSAAPLASTVEPSDNSIATLVSMGFDRNSARQ----PRNDINVATNILLEAQSH 533
           S  APL S+VEPS+ +I TLVSMGFDRN+ARQ     RND+N ATNILLEAQSH
Sbjct: 240 SQPAPLPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLEAQSH 293


>ref|XP_002876380.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis
           lyrata subsp. lyrata] gi|297322218|gb|EFH52639.1|
           ubiquitin-associated /TS-N domain-containing protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 293

 Score =  171 bits (432), Expect(2) = 1e-55
 Identities = 81/123 (65%), Positives = 94/123 (76%)
 Frame = +1

Query: 7   NMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSILPD 186
           N+L SGPYGLIF+SF+PFY DIPVSTRF +FG+NFSDKS +YLAG+QLL SS KRSI P 
Sbjct: 116 NLLTSGPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSLIYLAGVQLLLSSWKRSIFPG 175

Query: 187 ICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYTGR 366
           ICG+ A  LYR NI GI   KFPEFV+SFFSRL +P+ G S P A  RN++G I   TGR
Sbjct: 176 ICGIIAGPLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPSRNIVGTISPNTGR 235

Query: 367 EVE 375
             E
Sbjct: 236 RAE 238



 Score = 72.0 bits (175), Expect(2) = 1e-55
 Identities = 37/54 (68%), Positives = 43/54 (79%), Gaps = 4/54 (7%)
 Frame = +3

Query: 384 SSAAPLASTVEPSDNSIATLVSMGFDRNSARQ----PRNDINVATNILLEAQSH 533
           S  AP+ S+VEPS+ +I TLVSMGFDRN+ARQ     RND+N ATNILLEAQSH
Sbjct: 240 SQPAPVPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLEAQSH 293


>ref|XP_002307981.1| predicted protein [Populus trichocarpa] gi|222853957|gb|EEE91504.1|
           predicted protein [Populus trichocarpa]
          Length = 290

 Score =  169 bits (428), Expect(2) = 5e-55
 Identities = 81/120 (67%), Positives = 96/120 (80%)
 Frame = +1

Query: 7   NMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSILPD 186
           N+L SGPYGLIF+S+VPFYFDIPVSTRF + G++ SDKSF+YLAG+QLL SS KRSILP 
Sbjct: 116 NLLTSGPYGLIFASYVPFYFDIPVSTRFRVVGVHLSDKSFIYLAGVQLLLSSWKRSILPG 175

Query: 187 ICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYTGR 366
           ICG+ A  LYR N+FGI   KFPEF++SFFSRL WP+  GS   A+ RNV G+ PSY GR
Sbjct: 176 ICGILAGSLYRLNLFGIRKAKFPEFIASFFSRLSWPST-GSPRGATSRNVTGSAPSYAGR 234



 Score = 71.2 bits (173), Expect(2) = 5e-55
 Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 4/51 (7%)
 Frame = +3

Query: 393 APLASTVEPSDNSIATLVSMGFDRNSAR----QPRNDINVATNILLEAQSH 533
           AP+A + EPS+++IATL SMGFDRNSAR    Q RND+N ATNILLEAQSH
Sbjct: 240 APMAPSTEPSEDAIATLASMGFDRNSARQALVQARNDVNTATNILLEAQSH 290


>ref|XP_003554120.1| PREDICTED: uncharacterized protein LOC100805217 isoform 1 [Glycine
           max]
          Length = 293

 Score =  167 bits (422), Expect(2) = 8e-55
 Identities = 78/126 (61%), Positives = 97/126 (76%)
 Frame = +1

Query: 7   NMLASGPYGLIFSSFVPFYFDIPVSTRFHIFGINFSDKSFVYLAGLQLLFSSRKRSILPD 186
           N++  GPYGLIF+SF+PF+FDIPVSTRF +F   FSDKSF+YLAGLQLL SS KRSILP 
Sbjct: 116 NLVTPGPYGLIFASFLPFFFDIPVSTRFRVFSFLFSDKSFIYLAGLQLLLSSWKRSILPG 175

Query: 187 ICGVFASLLYRSNIFGICHIKFPEFVSSFFSRLCWPTLGGSSPSASDRNVIGNIPSYTGR 366
           +CG+ A  LYR N+F I   KFPE +SSFFSR+  P++G     +S RNV+GN+PSY  R
Sbjct: 176 MCGILAGSLYRLNVFYIRKAKFPEMISSFFSRILLPSMGSPRAPSSARNVVGNLPSYPAR 235

Query: 367 EVEGNY 384
           ++E NY
Sbjct: 236 QMERNY 241



 Score = 72.8 bits (177), Expect(2) = 8e-55
 Identities = 37/51 (72%), Positives = 43/51 (84%), Gaps = 4/51 (7%)
 Frame = +3

Query: 393 APLASTVEPSDNSIATLVSMGFDRNSAR----QPRNDINVATNILLEAQSH 533
           AP+ + VEP+++SI TLVSMGFDRNSAR    Q RND+NVATNILLEAQSH
Sbjct: 243 APMQAAVEPTEDSITTLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH 293


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