BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012430
         (1036 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   358   9e-97
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   358   9e-97
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   351   1e-94
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2...   339   6e-91
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      312   7e-83

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  358 bits (920), Expect = 9e-97
 Identities = 190/348 (54%), Positives = 238/348 (68%), Gaps = 3/348 (0%)
 Frame = +2

Query: 2    LVALEREIYIQLEKLGALKLFHACLARALAIPTTL---SSHTELTKHSSTEGDVHDHVNI 172
            +V LER+I +QL +LGALKLF  CL+R L   T+    S+ TE  +   T G V DH++ 
Sbjct: 146  MVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDK 205

Query: 173  TIVXXXXXXXXXXXXXXXXXTVSKTSSLAPMSKSISKPPRRAIGSTVGSLYKSRSRRQKV 352
             +V                       +    SK+I K P R   STV     SR +R   
Sbjct: 206  VVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMN 265

Query: 353  VRNEAEMSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAARVDMKVLQQRLHYGWFCRD 532
             +NEAEMS+ VK VA+LE+IR  LE E G VAS  +WAEAA VD KVLQQ+L +GW+CRD
Sbjct: 266  AKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRD 325

Query: 533  KLLRSTHSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRK 712
            +LLRSTHSLV+Y+ARNYRG+GV+ ED+ QAGN+GVL+GAERFDHT+GY+FSTYVQYWIRK
Sbjct: 326  ELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRK 385

Query: 713  YMSGLVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHGRYPDDDEISRFSGLSIAKIRFA 892
             MS LV +H+R ++IP TL+R I QI+K RK LY  HGRYPDD+EI++F+GLS+AKIR A
Sbjct: 386  SMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSA 445

Query: 893  SQCLRIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 1036
              CLR+VGS DQ   D   A   EFT DTSIKSPEE  M+Q  +KD++
Sbjct: 446  GNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIH 493


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  358 bits (920), Expect = 9e-97
 Identities = 190/348 (54%), Positives = 238/348 (68%), Gaps = 3/348 (0%)
 Frame = +2

Query: 2    LVALEREIYIQLEKLGALKLFHACLARALAIPTTL---SSHTELTKHSSTEGDVHDHVNI 172
            +V LER+I +QL +LGALKLF  CL+R L   T+    S+ TE  +   T G V DH++ 
Sbjct: 196  MVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDK 255

Query: 173  TIVXXXXXXXXXXXXXXXXXTVSKTSSLAPMSKSISKPPRRAIGSTVGSLYKSRSRRQKV 352
             +V                       +    SK+I K P R   STV     SR +R   
Sbjct: 256  VVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMN 315

Query: 353  VRNEAEMSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAARVDMKVLQQRLHYGWFCRD 532
             +NEAEMS+ VK VA+LE+IR  LE E G VAS  +WAEAA VD KVLQQ+L +GW+CRD
Sbjct: 316  AKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRD 375

Query: 533  KLLRSTHSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRK 712
            +LLRSTHSLV+Y+ARNYRG+GV+ ED+ QAGN+GVL+GAERFDHT+GY+FSTYVQYWIRK
Sbjct: 376  ELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRK 435

Query: 713  YMSGLVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHGRYPDDDEISRFSGLSIAKIRFA 892
             MS LV +H+R ++IP TL+R I QI+K RK LY  HGRYPDD+EI++F+GLS+AKIR A
Sbjct: 436  SMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSA 495

Query: 893  SQCLRIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 1036
              CLR+VGS DQ   D   A   EFT DTSIKSPEE  M+Q  +KD++
Sbjct: 496  GNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIH 543


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  351 bits (901), Expect = 1e-94
 Identities = 183/346 (52%), Positives = 243/346 (70%), Gaps = 4/346 (1%)
 Frame = +2

Query: 11   LEREIYIQLEKLGALKLFHACLARALAIPTTLSS---HTELTKHSSTEG-DVHDHVNITI 178
            LE +I +QL KLGALKLF+ CL R L     L     HTE+    +  G  +++ + + +
Sbjct: 147  LEEDILLQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQIKVVV 206

Query: 179  VXXXXXXXXXXXXXXXXXTVSKTSSLAPMSKSISKPPRRAIGSTVGSLYKSRSRRQKVVR 358
                                 K+ SL   S+ I     +   S+     KS+SRR  + R
Sbjct: 207  HTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIAR 266

Query: 359  NEAEMSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAARVDMKVLQQRLHYGWFCRDKL 538
            NEAEM+R +K +ADLEKIRT LE E+ +V S   WAEAA +D+KVLQQ+L +GW+CRD+L
Sbjct: 267  NEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDEL 326

Query: 539  LRSTHSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYM 718
            ++ST SLV+Y ARNYRG G++LEDL QAGN+GVL+GAERFDHTRGY+FSTYVQYWIRK M
Sbjct: 327  IKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSM 386

Query: 719  SGLVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHGRYPDDDEISRFSGLSIAKIRFASQ 898
            S +V++ +R IQIP TLSR I QI+K RK L T +G+YPDDDEI++++GLS+AKI  AS+
Sbjct: 387  SKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASR 446

Query: 899  CLRIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 1036
            CLR+VGS+DQK+G+  +AK+ EF  DTS++SPEEVVMRQHM +D++
Sbjct: 447  CLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMH 492


>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
            predicted protein [Populus trichocarpa]
          Length = 559

 Score =  339 bits (870), Expect = 6e-91
 Identities = 179/347 (51%), Positives = 240/347 (69%), Gaps = 5/347 (1%)
 Frame = +2

Query: 11   LEREIYIQLEKLGALKLFHACLARALAIPTTLSSH---TELTKHSSTEGDVHDHVNITIV 181
            LER+I +QL +LGAL+ F+ACL+R L     L      TE T  S T+G + D    T+V
Sbjct: 148  LERDILLQLGRLGALEFFNACLSRTLQTSNVLDLSAVPTENTGESKTDGMLGDLTGKTVV 207

Query: 182  XXXXXXXXXXXXXXXXX-TVSKTSSLAPMSKSISKP-PRRAIGSTVGSLYKSRSRRQKVV 355
                                 KT+SL+  SK++    P+        S   S SRR  + 
Sbjct: 208  RTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKPTFVKRTSS---SSSRRSLIA 264

Query: 356  RNEAEMSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAARVDMKVLQQRLHYGWFCRDK 535
            RNEA+M+R VK  +DLE+IRT LE E+GQV S   WAEA  +D KVLQQ+L +GW+CRD+
Sbjct: 265  RNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDE 324

Query: 536  LLRSTHSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRKY 715
            L+++THSLV+Y+ARNYRG+G+++EDL QAGN+G+L+GAERFD TRGY+FSTYVQYWIRK 
Sbjct: 325  LIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKS 384

Query: 716  MSGLVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHGRYPDDDEISRFSGLSIAKIRFAS 895
            M  +V +H+R IQIP  LSR IN+I+K RK L   HGRYPDD E+++F+GLS+AKI  A 
Sbjct: 385  MLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQ 444

Query: 896  QCLRIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 1036
            +CLR+V S+DQK+G+   AK++EF  D SI++PEE VMRQHM++++Y
Sbjct: 445  KCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREEIY 491


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  312 bits (800), Expect = 7e-83
 Identities = 167/345 (48%), Positives = 229/345 (66%)
 Frame = +2

Query: 2    LVALEREIYIQLEKLGALKLFHACLARALAIPTTLSSHTELTKHSSTEGDVHDHVNITIV 181
            L+ LE++I +QL +LGAL+LFHACL+R + +       TE  K +  +    D+     +
Sbjct: 141  LLKLEKDILVQLGRLGALQLFHACLSRIIDMSDLPGLITEDGKANVRK----DNELKKKL 196

Query: 182  XXXXXXXXXXXXXXXXXTVSKTSSLAPMSKSISKPPRRAIGSTVGSLYKSRSRRQKVVRN 361
                               S +   A  S+S  +     + ST     K+R RR  + +N
Sbjct: 197  VFSKRKEERKLRQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRRAIIAKN 256

Query: 362  EAEMSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAARVDMKVLQQRLHYGWFCRDKLL 541
            EAEMSR +K VA LEK++  LE E+G+  S + WAEAA +D KVLQ  LH+GW+CRD+LL
Sbjct: 257  EAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELL 316

Query: 542  RSTHSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYMS 721
            +S  SLV+YL+R YRGLGV+ EDL QAGN+G+L+GAERFDHTRGYQFSTYVQYWIRK MS
Sbjct: 317  KSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMS 376

Query: 722  GLVTQHSREIQIPVTLSRRINQIKKVRKTLYTLHGRYPDDDEISRFSGLSIAKIRFASQC 901
             LV++H R I++P TLS  IN+++K RK L    G++PDD E+S+ +GLS+ KI+ A  C
Sbjct: 377  QLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNC 436

Query: 902  LRIVGSVDQKVGDDQSAKFTEFTVDTSIKSPEEVVMRQHMQKDLY 1036
            LRIVGS+DQKVG   + K+ E T DT+++ PE+ VM+QHM+ D++
Sbjct: 437  LRIVGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRNDVH 481