BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012412
         (319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21655.3| unnamed protein product [Vitis vinifera]               87   1e-15
ref|XP_002272275.1| PREDICTED: DNA repair protein XRCC2 homolog ...    87   1e-15
ref|XP_003567316.1| PREDICTED: DNA repair protein XRCC2 homolog ...    70   1e-10
ref|XP_002515810.1| X-ray repair cross complementing protein 2, ...    69   3e-10
ref|XP_002864907.1| predicted protein [Arabidopsis lyrata subsp....    67   1e-09

>emb|CBI21655.3| unnamed protein product [Vitis vinifera]
          Length = 325

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 46/85 (54%), Positives = 61/85 (71%)
 Frame = +3

Query: 36  LLFHNISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPMLVLSTKATI 215
           L+  +I AFYW+DRAST + L ++ R+ LSL ++ ETVV+EI+KLL V PMLVL+TKATI
Sbjct: 167 LMIDSIGAFYWVDRASTSLHLESNSRKRLSLQSISETVVEEIRKLLLVHPMLVLATKATI 226

Query: 216 LGEGSLTSAHNRNFRKLSSLDTTEL 290
           LG+   T+   R   KLSS D + L
Sbjct: 227 LGDTYSTNEVKRTSMKLSSNDPSNL 251


>ref|XP_002272275.1| PREDICTED: DNA repair protein XRCC2 homolog [Vitis vinifera]
          Length = 315

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 46/85 (54%), Positives = 61/85 (71%)
 Frame = +3

Query: 36  LLFHNISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPMLVLSTKATI 215
           L+  +I AFYW+DRAST + L ++ R+ LSL ++ ETVV+EI+KLL V PMLVL+TKATI
Sbjct: 182 LMIDSIGAFYWVDRASTSLHLESNSRKRLSLQSISETVVEEIRKLLLVHPMLVLATKATI 241

Query: 216 LGEGSLTSAHNRNFRKLSSLDTTEL 290
           LG+   T+   R   KLSS D + L
Sbjct: 242 LGDTYSTNEVKRTSMKLSSNDPSNL 266


>ref|XP_003567316.1| PREDICTED: DNA repair protein XRCC2 homolog [Brachypodium
           distachyon]
          Length = 335

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +3

Query: 27  IFALLFHNISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPMLVLSTK 206
           I+ L+  +I AFYW+DR S P    + K +  SL ++ E+VVQEI+K LQ+QP+LVL +K
Sbjct: 174 IYFLMLDSIGAFYWIDRCSQPTR--DSKGKTQSLQSITESVVQEIRKFLQLQPILVLVSK 231

Query: 207 ATILGEGSLTS-AHNRNFRKLSSLDTTELVSSR 302
           A I GEG  TS    R   K  + D+T L  S+
Sbjct: 232 AHIYGEGITTSNDFQRGTSKFLTEDSTVLRYSK 264


>ref|XP_002515810.1| X-ray repair cross complementing protein 2, xrcc2, putative
           [Ricinus communis] gi|223545039|gb|EEF46552.1| X-ray
           repair cross complementing protein 2, xrcc2, putative
           [Ricinus communis]
          Length = 298

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 36/65 (55%), Positives = 48/65 (73%)
 Frame = +3

Query: 27  IFALLFHNISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPMLVLSTK 206
           I  ++  +I AF+W+DRAST   LG++ R+  SL  V ET+VQEI+KLL V PMLV++ K
Sbjct: 154 ISCMMIDSIGAFHWVDRASTSF-LGDNSRKGFSLQNVWETIVQEIKKLLLVHPMLVIAAK 212

Query: 207 ATILG 221
           ATILG
Sbjct: 213 ATILG 217


>ref|XP_002864907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297310742|gb|EFH41166.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 389

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 35/74 (47%), Positives = 50/74 (67%)
 Frame = +3

Query: 36  LLFHNISAFYWMDRASTPVSLGNDKRRNLSLHAVVETVVQEIQKLLQVQPMLVLSTKATI 215
           L+  +I AF+W DR S+ ++L    R++LSL  VVE +VQE++KLLQV  ++VL+TKATI
Sbjct: 187 LMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVEMIVQELKKLLQVHSLVVLATKATI 246

Query: 216 LGEGSLTSAHNRNF 257
             E      +NR F
Sbjct: 247 YEEKYPAIENNRKF 260