BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012384
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39461.3| unnamed protein product [Vitis vinifera]              100   1e-19
ref|XP_002269673.1| PREDICTED: pentatricopeptide repeat-containi...   100   1e-19
ref|XP_004136857.1| PREDICTED: pentatricopeptide repeat-containi...    98   8e-19
ref|NP_849590.1| uncharacterized protein [Arabidopsis thaliana] ...    96   4e-18
ref|NP_563712.1| uncharacterized protein [Arabidopsis thaliana] ...    96   4e-18

>emb|CBI39461.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  100 bits (249), Expect = 1e-19
 Identities = 56/107 (52%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = -1

Query: 317 SSYDTRMHNQTPDHFTSRQNTLPEGQYVDDLM--ESKRDTSDSLKEPPGRNVSKKDKIKF 144
           SSY T    Q  D     +     GQ  +  M  +S +D +   K   G NVS+KDKI F
Sbjct: 27  SSYSTFTQTQMSDTSNVGEVAFLGGQCNNQPMYHDSGKDAASVHKHQIGENVSRKDKINF 86

Query: 143 LVDTLLGLKESKEAVYGALDAWVAWEKTFPLASLRIAMGTLEKEQEW 3
           LV TLL LK+SKEAVYGALDAWVAWE+ FP+ASL+  + TLEKEQ+W
Sbjct: 87  LVTTLLDLKDSKEAVYGALDAWVAWEQNFPIASLKRVLITLEKEQQW 133


>ref|XP_002269673.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
           chloroplastic-like isoform 1 [Vitis vinifera]
          Length = 300

 Score =  100 bits (249), Expect = 1e-19
 Identities = 56/107 (52%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = -1

Query: 317 SSYDTRMHNQTPDHFTSRQNTLPEGQYVDDLM--ESKRDTSDSLKEPPGRNVSKKDKIKF 144
           SSY T    Q  D     +     GQ  +  M  +S +D +   K   G NVS+KDKI F
Sbjct: 31  SSYSTFTQTQMSDTSNVGEVAFLGGQCNNQPMYHDSGKDAASVHKHQIGENVSRKDKINF 90

Query: 143 LVDTLLGLKESKEAVYGALDAWVAWEKTFPLASLRIAMGTLEKEQEW 3
           LV TLL LK+SKEAVYGALDAWVAWE+ FP+ASL+  + TLEKEQ+W
Sbjct: 91  LVTTLLDLKDSKEAVYGALDAWVAWEQNFPIASLKRVLITLEKEQQW 137


>ref|XP_004136857.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
           chloroplastic-like [Cucumis sativus]
          Length = 302

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
 Frame = -1

Query: 338 SEVRPGNSSYDTRMHNQTPDHFTSRQNTLPEGQYVDDLME-SKRDTSDSLKEPPGRNVSK 162
           S ++ G+S Y T + +Q       +     +      L   S+++  D  K   G+N+S+
Sbjct: 31  SRLQVGSSCYCTTIQDQMCQQLADKDRKDKDVNSSKALGHISEQNIGDIRKHQIGKNISR 90

Query: 161 KDKIKFLVDTLLGLKESKEAVYGALDAWVAWEKTFPLASLRIAMGTLEKEQEW 3
           KDKI FLV+TLL L++SKEAVYGALDAWVAWE+ FP+ASL+  +  LEKEQ+W
Sbjct: 91  KDKIHFLVNTLLDLRDSKEAVYGALDAWVAWEQVFPIASLKHVLAALEKEQQW 143


>ref|NP_849590.1| uncharacterized protein [Arabidopsis thaliana]
           gi|332189598|gb|AEE27719.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 384

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 9/82 (10%)
 Frame = -1

Query: 221 ESKRDTSDSLK----EPP-----GRNVSKKDKIKFLVDTLLGLKESKEAVYGALDAWVAW 69
           E + D SDS K    E P     G N+ KKDKIKFLV+TLL ++++KEAVYGALDAWVAW
Sbjct: 114 EDEEDFSDSSKKGNAENPRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAW 173

Query: 68  EKTFPLASLRIAMGTLEKEQEW 3
           E+ FP+ASL+I + +LEKE +W
Sbjct: 174 ERNFPIASLKIVIASLEKEHQW 195


>ref|NP_563712.1| uncharacterized protein [Arabidopsis thaliana]
           gi|13430646|gb|AAK25945.1|AF360235_1 unknown protein
           [Arabidopsis thaliana] gi|14532820|gb|AAK64092.1|
           unknown protein [Arabidopsis thaliana]
           gi|332189597|gb|AEE27718.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 381

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 9/82 (10%)
 Frame = -1

Query: 221 ESKRDTSDSLK----EPP-----GRNVSKKDKIKFLVDTLLGLKESKEAVYGALDAWVAW 69
           E + D SDS K    E P     G N+ KKDKIKFLV+TLL ++++KEAVYGALDAWVAW
Sbjct: 114 EDEEDFSDSSKKGNAENPRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAW 173

Query: 68  EKTFPLASLRIAMGTLEKEQEW 3
           E+ FP+ASL+I + +LEKE +W
Sbjct: 174 ERNFPIASLKIVIASLEKEHQW 195