BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012362
         (445 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAK05086.1| predicted protein [Hordeum vulgare subsp. vulgare]     60   2e-07
ref|XP_003578053.1| PREDICTED: putative F-box protein At1g33530-...    56   4e-06
ref|XP_002525835.1| conserved hypothetical protein [Ricinus comm...    55   8e-06

>dbj|BAK05086.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 378

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
 Frame = -1

Query: 427 NLDDKIICVEKKDNQV--GPYIVEDIILFDIFRRLPARKFCKLRYTCKQWYMLISS*HFI 254
           +L  K +  EKK   V     ++    L ++F RLPAR     R  CK W  L+S  HF+
Sbjct: 2   SLPSKTLMGEKKAKAVEGNARLLCSDALTEVFHRLPARTLASCRMVCKSWMSLLSDVHFV 61

Query: 253 NTHLRQSSPCLIAVSKCTIVNSRGIDMLRKQMSIQYVYPDIVQIKNEKVSVVDFRIKWRL 74
           + HL +S   L+  +     N R + M+    +  Y+Y    Q+    VS         L
Sbjct: 62  HEHLNRSQQKLLLFAN-DRANDRSLAMVLADAN-GYMY----QLSRPLVSQT-------L 108

Query: 73  FVEGSINGLLLLEDTFGNVSVSNP 2
           FV  S NGLL L D+ G V + NP
Sbjct: 109 FVHNSCNGLLCLGDSKGAVELLNP 132


>ref|XP_003578053.1| PREDICTED: putative F-box protein At1g33530-like isoform 1
           [Brachypodium distachyon]
           gi|357158215|ref|XP_003578054.1| PREDICTED: putative
           F-box protein At1g33530-like isoform 2 [Brachypodium
           distachyon]
          Length = 378

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 38/117 (32%), Positives = 54/117 (46%)
 Frame = -1

Query: 352 LFDIFRRLPARKFCKLRYTCKQWYMLISS*HFINTHLRQSSPCLIAVSKCTIVNSRGIDM 173
           L ++F RLPAR     R  CK W  ++S  HF+  HLR+S   L+  +     N R + M
Sbjct: 29  LTEVFHRLPARTLVSCRMVCKSWMSVLSDMHFVYEHLRRSQQKLLLFAN-DRANDRSLAM 87

Query: 172 LRKQMSIQYVYPDIVQIKNEKVSVVDFRIKWRLFVEGSINGLLLLEDTFGNVSVSNP 2
           +    S       + Q+    ++         LFV  S NGLL L D+ G V + NP
Sbjct: 88  VLADAS-----GSMYQLSRPLLA------SRSLFVHNSCNGLLCLGDSTGAVELLNP 133


>ref|XP_002525835.1| conserved hypothetical protein [Ricinus communis]
           gi|223534840|gb|EEF36529.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 371

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
 Frame = -1

Query: 355 ILFDIFRRLPARKFCKLRYTCKQWYMLISS*HFINTHLRQSSPCLIAVSKCTIVNSRGID 176
           IL +I +RLP +   K R  C+ W+ LI++  FI+TH+  S  C   V    +V  + + 
Sbjct: 9   ILIEILKRLPVKSLLKYRCVCQSWHSLITNSSFISTHINHSIECNNRVHSYALVKQKSVP 68

Query: 175 MLRKQMSIQYVYPDIVQIKNEKVSVVDFRIKWRLFVE--GSINGLLLLEDT 29
              K+  I Y+  D           +DF  K   ++E   S NGL+ L D+
Sbjct: 69  DC-KERFILYIDDDSGDEPFRVYQELDFPFKGERYLEIISSCNGLVCLSDS 118