BLASTX nr result
ID: Coptis24_contig00012362
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00012362 (445 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAK05086.1| predicted protein [Hordeum vulgare subsp. vulgare] 60 2e-07 ref|XP_003578053.1| PREDICTED: putative F-box protein At1g33530-... 56 4e-06 ref|XP_002525835.1| conserved hypothetical protein [Ricinus comm... 55 8e-06 >dbj|BAK05086.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 378 Score = 59.7 bits (143), Expect = 2e-07 Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 2/144 (1%) Frame = -1 Query: 427 NLDDKIICVEKKDNQV--GPYIVEDIILFDIFRRLPARKFCKLRYTCKQWYMLISS*HFI 254 +L K + EKK V ++ L ++F RLPAR R CK W L+S HF+ Sbjct: 2 SLPSKTLMGEKKAKAVEGNARLLCSDALTEVFHRLPARTLASCRMVCKSWMSLLSDVHFV 61 Query: 253 NTHLRQSSPCLIAVSKCTIVNSRGIDMLRKQMSIQYVYPDIVQIKNEKVSVVDFRIKWRL 74 + HL +S L+ + N R + M+ + Y+Y Q+ VS L Sbjct: 62 HEHLNRSQQKLLLFAN-DRANDRSLAMVLADAN-GYMY----QLSRPLVSQT-------L 108 Query: 73 FVEGSINGLLLLEDTFGNVSVSNP 2 FV S NGLL L D+ G V + NP Sbjct: 109 FVHNSCNGLLCLGDSKGAVELLNP 132 >ref|XP_003578053.1| PREDICTED: putative F-box protein At1g33530-like isoform 1 [Brachypodium distachyon] gi|357158215|ref|XP_003578054.1| PREDICTED: putative F-box protein At1g33530-like isoform 2 [Brachypodium distachyon] Length = 378 Score = 55.8 bits (133), Expect = 4e-06 Identities = 38/117 (32%), Positives = 54/117 (46%) Frame = -1 Query: 352 LFDIFRRLPARKFCKLRYTCKQWYMLISS*HFINTHLRQSSPCLIAVSKCTIVNSRGIDM 173 L ++F RLPAR R CK W ++S HF+ HLR+S L+ + N R + M Sbjct: 29 LTEVFHRLPARTLVSCRMVCKSWMSVLSDMHFVYEHLRRSQQKLLLFAN-DRANDRSLAM 87 Query: 172 LRKQMSIQYVYPDIVQIKNEKVSVVDFRIKWRLFVEGSINGLLLLEDTFGNVSVSNP 2 + S + Q+ ++ LFV S NGLL L D+ G V + NP Sbjct: 88 VLADAS-----GSMYQLSRPLLA------SRSLFVHNSCNGLLCLGDSTGAVELLNP 133 >ref|XP_002525835.1| conserved hypothetical protein [Ricinus communis] gi|223534840|gb|EEF36529.1| conserved hypothetical protein [Ricinus communis] Length = 371 Score = 54.7 bits (130), Expect = 8e-06 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Frame = -1 Query: 355 ILFDIFRRLPARKFCKLRYTCKQWYMLISS*HFINTHLRQSSPCLIAVSKCTIVNSRGID 176 IL +I +RLP + K R C+ W+ LI++ FI+TH+ S C V +V + + Sbjct: 9 ILIEILKRLPVKSLLKYRCVCQSWHSLITNSSFISTHINHSIECNNRVHSYALVKQKSVP 68 Query: 175 MLRKQMSIQYVYPDIVQIKNEKVSVVDFRIKWRLFVE--GSINGLLLLEDT 29 K+ I Y+ D +DF K ++E S NGL+ L D+ Sbjct: 69 DC-KERFILYIDDDSGDEPFRVYQELDFPFKGERYLEIISSCNGLVCLSDS 118