BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012293
         (1556 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]   743   0.0  
ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v...   742   0.0  
ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ric...   710   0.0  
ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis t...   696   0.0  
ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine...   696   0.0  

>emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]
          Length = 1039

 Score =  743 bits (1919), Expect = 0.0
 Identities = 377/518 (72%), Positives = 426/518 (82%)
 Frame = -2

Query: 1555 RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 1376
            RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVAL GAENLILASDPDREGEAIAWHI
Sbjct: 425  RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHI 484

Query: 1375 TEMLQQQDALHENINVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 1196
             EML QQDALH+++ VARVVFHEITESSIKSA+  PR+ID +LVHAYLARRALDYLIGF+
Sbjct: 485  IEMLLQQDALHKDLTVARVVFHEITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFN 544

Query: 1195 ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSLGKIS 1016
            ISPLLWRKLP CQSAGRVQSAALALICDREMEID FK Q+YWTV+VEFN+ +  S+    
Sbjct: 545  ISPLLWRKLPGCQSAGRVQSAALALICDREMEIDEFKPQEYWTVEVEFNRKQGSSMNSKF 604

Query: 1015 FSSHLTHLNSKKLEQFXXXXXXXXXXXEQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 836
            F S+LTH +SKKL QF           EQ++ S  F+V+GSKR+K R+NPPTPYITSTLQ
Sbjct: 605  FPSYLTHFDSKKLNQFSISSHTEAKAIEQEINSLEFKVIGSKRNKMRKNPPTPYITSTLQ 664

Query: 835  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSLVIE 656
            QDAANKL+F+A +TMKLAQ+LYEGV+LSD +A GLITYMRTDGLHVSD AA+DIRSLV E
Sbjct: 665  QDAANKLHFSAMYTMKLAQRLYEGVQLSDGKAAGLITYMRTDGLHVSDEAAKDIRSLVAE 724

Query: 655  RYGQDFASESTRKFYKKVKNAQEAHEAIRPTSVRRLPSMLTGVLDEDSLSLYTLIWSRAM 476
            RYG + AS+  RK++KKVKNAQEAHEAIRPT +RRLPSML GVLDEDSL LYTLIWSR M
Sbjct: 725  RYGSNLASDGVRKYFKKVKNAQEAHEAIRPTDIRRLPSMLAGVLDEDSLKLYTLIWSRTM 784

Query: 475  ACQMVPTVIDQIQVDVGGAGSFLGLRSTCSRVEFPGYQGVYKDKEAAALGSNEKEGDARE 296
            ACQM P  IDQIQVD+G A   +  RSTCS VEF GYQ VYKD EA A+  +E EG+ R 
Sbjct: 785  ACQMEPATIDQIQVDIGNANESVVFRSTCSGVEFFGYQAVYKDVEAKAIRVDENEGNERG 844

Query: 295  EAFEVLCKLKKGDSLQLGKVDLKEHSTQPPSWYNXXXXXXXXXXXGIGRPSTYASTIKVL 116
            E F+ L  LK GD L L  ++L++H T PPS Y+           GIGRPSTYA T+KVL
Sbjct: 845  EVFKALSSLKAGDPLYLSLLELEQHHTLPPSRYSEGALVKKLEELGIGRPSTYAITMKVL 904

Query: 115  KDRNYVTTKSRILHPEFRGRMVSAFLAHHFSEVTDYSF 2
            +DRNYVT K+R+L+PEFRGRMVSAFL+HHFSEVTDYSF
Sbjct: 905  QDRNYVTVKNRVLYPEFRGRMVSAFLSHHFSEVTDYSF 942


>ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 1185

 Score =  742 bits (1915), Expect = 0.0
 Identities = 376/518 (72%), Positives = 426/518 (82%)
 Frame = -2

Query: 1555 RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 1376
            RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVAL GAENLILASDPDREGEAIAWHI
Sbjct: 412  RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHI 471

Query: 1375 TEMLQQQDALHENINVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 1196
             EML QQDALH+++ VARVVFHEITESSIKSA+  PR+ID +LVHAYLARRALDYLIGF+
Sbjct: 472  IEMLLQQDALHKDLTVARVVFHEITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFN 531

Query: 1195 ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSLGKIS 1016
            ISPLLWRKLP CQSAGRVQSAALALICDREMEID FK Q+YWTV+VEFN+ +  S+    
Sbjct: 532  ISPLLWRKLPGCQSAGRVQSAALALICDREMEIDEFKPQEYWTVEVEFNRKQGSSMNSKF 591

Query: 1015 FSSHLTHLNSKKLEQFXXXXXXXXXXXEQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 836
            F S+LTH +SKKL QF           EQ++ S  F+V+GSKR+K R+NPPTPYITSTLQ
Sbjct: 592  FPSYLTHFDSKKLNQFSISSHTEAKAIEQEINSLEFKVIGSKRNKMRKNPPTPYITSTLQ 651

Query: 835  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSLVIE 656
            QDAANKL+F+A +TMKLAQ+LYEGV+LSD +A GLITYMRTDGLHVSD AA+DIRSLV E
Sbjct: 652  QDAANKLHFSAMYTMKLAQRLYEGVQLSDGKAAGLITYMRTDGLHVSDEAAKDIRSLVAE 711

Query: 655  RYGQDFASESTRKFYKKVKNAQEAHEAIRPTSVRRLPSMLTGVLDEDSLSLYTLIWSRAM 476
            RYG + AS+  RK++KKVKNAQEAHEAIRPT ++RLPSML GVLDEDSL LYTLIWSR M
Sbjct: 712  RYGSNLASDGVRKYFKKVKNAQEAHEAIRPTDIQRLPSMLAGVLDEDSLKLYTLIWSRTM 771

Query: 475  ACQMVPTVIDQIQVDVGGAGSFLGLRSTCSRVEFPGYQGVYKDKEAAALGSNEKEGDARE 296
            ACQM P  IDQIQVD+G A   +  RSTCS VEF GYQ VYKD EA A+  +E EG+ R 
Sbjct: 772  ACQMEPATIDQIQVDIGNANESVVFRSTCSGVEFFGYQAVYKDVEAKAIRVDENEGNERG 831

Query: 295  EAFEVLCKLKKGDSLQLGKVDLKEHSTQPPSWYNXXXXXXXXXXXGIGRPSTYASTIKVL 116
            E F+ L  LK GD L L  ++L++H T PPS Y+           GIGRPSTYA T+KVL
Sbjct: 832  EVFKALSSLKAGDPLYLSLLELEQHHTLPPSRYSEGALVKKLEELGIGRPSTYAITMKVL 891

Query: 115  KDRNYVTTKSRILHPEFRGRMVSAFLAHHFSEVTDYSF 2
            +DRNYVT K+R+L+PEFRGRMVSAFL+HHFSEVTDYSF
Sbjct: 892  QDRNYVTVKNRVLYPEFRGRMVSAFLSHHFSEVTDYSF 929


>ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
            gi|223532629|gb|EEF34415.1| prokaryotic DNA
            topoisomerase, putative [Ricinus communis]
          Length = 1071

 Score =  710 bits (1832), Expect = 0.0
 Identities = 362/518 (69%), Positives = 415/518 (80%)
 Frame = -2

Query: 1555 RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 1376
            RDLA RSGSVRPDDDFSMVWEVPS AWTHLK+IKVALNGAENL+LASDPDREGEAIAWHI
Sbjct: 321  RDLAARSGSVRPDDDFSMVWEVPSPAWTHLKTIKVALNGAENLVLASDPDREGEAIAWHI 380

Query: 1375 TEMLQQQDALHENINVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 1196
             EMLQQQDALH+ + VARVVFHEITE SIK+A+Q PR+ID +LVHAYLARRALDYLIGF+
Sbjct: 381  IEMLQQQDALHQGVTVARVVFHEITEQSIKNALQAPREIDLNLVHAYLARRALDYLIGFN 440

Query: 1195 ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSLGKIS 1016
            ISPLLWRKLP CQSAGRVQSAAL+LICDREMEID F  Q+YWT+DVE   +E GS    S
Sbjct: 441  ISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFTPQEYWTIDVELYIMETGS----S 496

Query: 1015 FSSHLTHLNSKKLEQFXXXXXXXXXXXEQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 836
             ++ LTH +  KL Q            EQK+  +SF V G+K SK RRNPPTPYITSTLQ
Sbjct: 497  VNARLTHFDFNKLNQLSVRSHTEARDIEQKINVASFLVAGAKESKMRRNPPTPYITSTLQ 556

Query: 835  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSLVIE 656
            QDAANKL+F++ +TMKLAQKLYEGV+LSD + TGLITY+RTDGLH+S  A ++I SLVIE
Sbjct: 557  QDAANKLHFSSMYTMKLAQKLYEGVQLSDGKTTGLITYIRTDGLHISGEAVKEIHSLVIE 616

Query: 655  RYGQDFASESTRKFYKKVKNAQEAHEAIRPTSVRRLPSMLTGVLDEDSLSLYTLIWSRAM 476
            RYGQDFAS+S RK++KKVKNAQEAHEA+RPT+VR LPSML  VLDEDSL LYTLIWSR +
Sbjct: 617  RYGQDFASDSPRKYFKKVKNAQEAHEAVRPTNVRMLPSMLANVLDEDSLKLYTLIWSRTV 676

Query: 475  ACQMVPTVIDQIQVDVGGAGSFLGLRSTCSRVEFPGYQGVYKDKEAAALGSNEKEGDARE 296
            ACQM P  I+QIQVD+G A   + LRS CS V F GYQ VY+DKEA A+ + E E +   
Sbjct: 677  ACQMEPATIEQIQVDIGNANGSITLRSACSGVGFLGYQIVYEDKEAGAIKNKESEVNDHN 736

Query: 295  EAFEVLCKLKKGDSLQLGKVDLKEHSTQPPSWYNXXXXXXXXXXXGIGRPSTYASTIKVL 116
            EAF +L  LK GD   L +V LK+H TQPP  Y+           GIGRPSTYAST+KVL
Sbjct: 737  EAFGILKSLKPGDPFNLSEVKLKQHFTQPPPRYSEGTLVKKLEELGIGRPSTYASTLKVL 796

Query: 115  KDRNYVTTKSRILHPEFRGRMVSAFLAHHFSEVTDYSF 2
            +DRNYVT K+R+L+PEFRGRMVSAFL+ HF+EVTDYSF
Sbjct: 797  QDRNYVTVKNRVLNPEFRGRMVSAFLSQHFTEVTDYSF 834


>ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
            gi|332660478|gb|AEE85878.1| DNA topoisomerase, type IA,
            core [Arabidopsis thaliana]
          Length = 1284

 Score =  696 bits (1796), Expect = 0.0
 Identities = 351/519 (67%), Positives = 413/519 (79%), Gaps = 1/519 (0%)
 Frame = -2

Query: 1555 RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 1376
            RDLA RSGSVRPDDDFSMVWEVPS+AWTH+KSIKVALNGAENLILASDPDREGEAIAWHI
Sbjct: 506  RDLATRSGSVRPDDDFSMVWEVPSSAWTHIKSIKVALNGAENLILASDPDREGEAIAWHI 565

Query: 1375 TEMLQQQDALHENINVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 1196
             EMLQQQ ALHE++ VARVVFHEITES+IKSA+Q+PR+ID DLVHAYLARRALDYLIGF+
Sbjct: 566  IEMLQQQGALHESMTVARVVFHEITESAIKSALQSPREIDGDLVHAYLARRALDYLIGFN 625

Query: 1195 ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSLGKIS 1016
            ISPLLWRKLP C SAGRVQSAALAL+CDRE EIDGFK Q+YWTV ++      G     +
Sbjct: 626  ISPLLWRKLPGCPSAGRVQSAALALVCDRESEIDGFKPQEYWTVGIKVK----GKDNSAT 681

Query: 1015 FSSHLTHLNSKKLEQFXXXXXXXXXXXEQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 836
            FS+HLT LNSK+L Q            EQ++ S  F V G+K S  R+NPPTPYITSTLQ
Sbjct: 682  FSAHLTSLNSKRLNQLSISSEANAQDIEQRIKSEGFLVKGTKTSTTRKNPPTPYITSTLQ 741

Query: 835  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSLVIE 656
            QDAANKL+F+  HTMKLAQKLYEGV+LSD ++ GLITYMRTDGLH++D A +DI+SLV E
Sbjct: 742  QDAANKLHFSTAHTMKLAQKLYEGVQLSDGKSAGLITYMRTDGLHIADEAIKDIQSLVAE 801

Query: 655  RYGQDFASESTRKFYKKVKNAQEAHEAIRPTSVRRLPSMLTGVLDEDSLSLYTLIWSRAM 476
            RYG++F S+S RK++KKVKNAQEAHEAIRPT +RRLPS +  +LD DSL LYTLIWSRA+
Sbjct: 802  RYGKNFTSDSPRKYFKKVKNAQEAHEAIRPTDIRRLPSTIASLLDADSLKLYTLIWSRAV 861

Query: 475  ACQMVPTVIDQIQVDVGGAGSFLGLRSTCSRVEFPGYQGVYKDKEAAALGSNEK-EGDAR 299
            ACQM P  I QIQ+D+G A   +  RS+CS+VEF GYQ VY+D EA A+ +N+  +   R
Sbjct: 862  ACQMEPASIAQIQLDIGNASESIIFRSSCSKVEFLGYQAVYEDPEAKAIKNNDNDQSSER 921

Query: 298  EEAFEVLCKLKKGDSLQLGKVDLKEHSTQPPSWYNXXXXXXXXXXXGIGRPSTYASTIKV 119
            EE F+ L  LK GD LQ+G+V+LK+H TQ P  Y+           GIGRPSTYAS  +V
Sbjct: 922  EETFKTLSSLKDGDLLQIGEVELKQHHTQHPPRYSEGSLVKKLEELGIGRPSTYASIFRV 981

Query: 118  LKDRNYVTTKSRILHPEFRGRMVSAFLAHHFSEVTDYSF 2
            L+ R YVT K+R+L+PEFR RMVSAFL H+F+E+TDYSF
Sbjct: 982  LQHRKYVTIKNRVLYPEFRARMVSAFLTHYFTEITDYSF 1020


>ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
          Length = 1197

 Score =  696 bits (1795), Expect = 0.0
 Identities = 349/518 (67%), Positives = 410/518 (79%)
 Frame = -2

Query: 1555 RDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALNGAENLILASDPDREGEAIAWHI 1376
            RDLA RSGSVRPDDDFSMVWEVP  AWTHLKSIKVAL+ AENLILASDPDREGEAIAWHI
Sbjct: 420  RDLAARSGSVRPDDDFSMVWEVPPPAWTHLKSIKVALSRAENLILASDPDREGEAIAWHI 479

Query: 1375 TEMLQQQDALHENINVARVVFHEITESSIKSAMQNPRDIDADLVHAYLARRALDYLIGFS 1196
             EMLQQQ ALH+NI++ARVVFHEITE SIK A+Q PR+ID +LV AYLARRALDYLIGF+
Sbjct: 480  IEMLQQQGALHDNISLARVVFHEITEKSIKGALQTPREIDVNLVQAYLARRALDYLIGFN 539

Query: 1195 ISPLLWRKLPACQSAGRVQSAALALICDREMEIDGFKTQDYWTVDVEFNKLEPGSLGKIS 1016
            ISPLLWRKLP CQSAGRVQSAAL+LICDREMEID FK ++YWTV+V+  K E  S   ++
Sbjct: 540  ISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPKEYWTVEVQMKKKELRSNKNLT 599

Query: 1015 FSSHLTHLNSKKLEQFXXXXXXXXXXXEQKMASSSFEVLGSKRSKARRNPPTPYITSTLQ 836
            F +HLTH +SKKL +F              + S+ F V+  K++K+RRNPPTPYITSTLQ
Sbjct: 600  FPAHLTHFDSKKLNKFSITSDTEARDIRSNINSADFHVVSLKKNKSRRNPPTPYITSTLQ 659

Query: 835  QDAANKLNFTAGHTMKLAQKLYEGVKLSDDEATGLITYMRTDGLHVSDVAAEDIRSLVIE 656
            QDAANKL+FTA HTMKLAQKLYEGV+LSD  A GLITY+RTDGLH+SD A   IRSL+IE
Sbjct: 660  QDAANKLHFTASHTMKLAQKLYEGVELSDSVAVGLITYIRTDGLHISDEAVASIRSLIIE 719

Query: 655  RYGQDFASESTRKFYKKVKNAQEAHEAIRPTSVRRLPSMLTGVLDEDSLSLYTLIWSRAM 476
            RYGQDF S+S  K+YKKVKNAQEAHEAIRPT +R+LPSML+ +LDE+SL LYTLIWSR +
Sbjct: 720  RYGQDFVSQSAPKYYKKVKNAQEAHEAIRPTDIRKLPSMLSAILDEESLKLYTLIWSRTV 779

Query: 475  ACQMVPTVIDQIQVDVGGAGSFLGLRSTCSRVEFPGYQGVYKDKEAAALGSNEKEGDARE 296
            +CQM P V +QIQ+D+G     + L+S+ SRVEFPGY+ V+ D  + A+     +  + +
Sbjct: 780  SCQMEPAVFEQIQLDIGNLDESIILQSSISRVEFPGYRAVFTDIVSEAVQDKGSDESSHD 839

Query: 295  EAFEVLCKLKKGDSLQLGKVDLKEHSTQPPSWYNXXXXXXXXXXXGIGRPSTYASTIKVL 116
            + F VL  LK GDSL + + +  +H TQPP  Y+           GIGRPSTYASTIKVL
Sbjct: 840  QTFGVLNSLKTGDSLHVVQTEPNQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTIKVL 899

Query: 115  KDRNYVTTKSRILHPEFRGRMVSAFLAHHFSEVTDYSF 2
            +DRNYVT KSR+L PEFRGRMVSAFL++HFSEVTDYSF
Sbjct: 900  QDRNYVTVKSRVLSPEFRGRMVSAFLSNHFSEVTDYSF 937