BLASTX nr result

ID: Coptis24_contig00012261 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012261
         (1835 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285583.1| PREDICTED: glutamyl-tRNA reductase 1, chloro...   649   0.0  
ref|XP_002509995.1| Glutamyl-tRNA reductase 1, chloroplast precu...   626   e-177
ref|XP_002301105.1| predicted protein [Populus trichocarpa] gi|2...   620   e-175
ref|XP_004148403.1| PREDICTED: glutamyl-tRNA reductase 1, chloro...   619   e-175
ref|XP_003522737.1| PREDICTED: glutamyl-tRNA reductase 1, chloro...   617   e-174

>ref|XP_002285583.1| PREDICTED: glutamyl-tRNA reductase 1, chloroplastic [Vitis vinifera]
            gi|147816412|emb|CAN77439.1| hypothetical protein
            VITISV_007402 [Vitis vinifera]
          Length = 545

 Score =  649 bits (1673), Expect = 0.0
 Identities = 346/525 (65%), Positives = 414/525 (78%), Gaps = 10/525 (1%)
 Frame = -2

Query: 1720 TSSISYSQYRIICKPITFKRRFVIGRDRSGVPLNPRCGGMPEE--DSDS-RGSSMSALER 1550
            +SS S SQYRI CKP   +R  +    + G  LN RC    +   D+DS R SS+SALE+
Sbjct: 26   SSSRSSSQYRIFCKPARTRRSLI----QRGASLNSRCEVASDALVDTDSTRSSSVSALEQ 81

Query: 1549 LKISGADRYTKEKSSIIVLGLSIHTAPVETREKLAIPEAEYPQAIRELCGFYHIEEAAVL 1370
            LK S ADRYTKE+SSI+V+GLSIHT PVE REKLAIPEAE+P+AI ELC   HIEEAAVL
Sbjct: 82   LKTSAADRYTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVL 141

Query: 1369 STCNRVEIYVVALSWHCGVRDVTEWMEKTSGVAASELRPHLFLLRGSDAINHLFEVSAGL 1190
            STCNR+EIYVVALS H GV++VTEWM KTSGV  SEL  H FLL   DA  HLFEVSAGL
Sbjct: 142  STCNRMEIYVVALSQHRGVKEVTEWMSKTSGVPVSELCHHRFLLYNKDATQHLFEVSAGL 201

Query: 1189 DSLILGDEQILGRVKQVVNFGEGVTGFGRSLNGLFRYALRVGADVLTKTNIASGPIISVS 1010
            DSL+LG+ QIL +VKQVV  G+GV GFGR+++GLF++A+ VG  V T+TNIA+G  +SVS
Sbjct: 202  DSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAITVGKRVRTETNIAAG-AVSVS 260

Query: 1009 SAAVELAIIKLPQNLSSTARVLVIGAGKMGRLVINHLVAKGWTKIVVVNRSEHRVDAIRE 830
            SAAVELA++KLP++  +TAR+LVIGAGKMG+LVI HLVAKG TK+V+VNR E RV AIRE
Sbjct: 261  SAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVIVNRGEERVAAIRE 320

Query: 829  DLSGVEIIYKPLTEMLTCAGESDVVFTSTASNIPLFMKDNVETLPPVGTMNGGSRLFFDI 650
            ++  VEIIY+PLTEML CA E+DVVFTSTAS  PLF+K++V+ LP VG   GG RLF DI
Sbjct: 321  EMKDVEIIYRPLTEMLACAAEADVVFTSTASETPLFLKEHVKDLPAVGQDVGGLRLFVDI 380

Query: 649  SVPRNVGSCVSDVENTQVYNVDDFKEVLAPKME-------EAQAIVAKNLDDFQDKMDSF 491
            SVPRNVG+CVSD+E  +VYNVDD KEV+A   E       EAQAI+ +    F+   DS 
Sbjct: 381  SVPRNVGACVSDLETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFEAWRDSL 440

Query: 490  ETVPTIKNLRALVETIRITELERCLSKIKHDIPKKTRRAIEDLSRGMMNKVLHGPMEHLR 311
            ETVPTIK LRA  E IR+ ELE+CLSK+  DI KKTRRA++DLSRG++NK+LHGPM+HLR
Sbjct: 441  ETVPTIKKLRAYAERIRVAELEKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLR 500

Query: 310  CDESNSRPLSEILENMHALNRMFSLETDASILEQKIRAKMEQSRK 176
            CD S+SR LSE LENMHALNRMFSLET+ S+LEQKIRAK+EQ++K
Sbjct: 501  CDGSDSRTLSETLENMHALNRMFSLETEISLLEQKIRAKVEQTQK 545


>ref|XP_002509995.1| Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus
            communis] gi|223550696|gb|EEF52182.1| Glutamyl-tRNA
            reductase 1, chloroplast precursor, putative [Ricinus
            communis]
          Length = 565

 Score =  626 bits (1615), Expect = e-177
 Identities = 343/570 (60%), Positives = 424/570 (74%), Gaps = 43/570 (7%)
 Frame = -2

Query: 1765 MATSTGFPTSMAA-------LNTSS--------------ISYSQYRIICKPI------TF 1667
            MA S+GF T+++        LN+S+              +S  + R+ CKP         
Sbjct: 1    MAVSSGFATTLSGAKMEALLLNSSASSSSSGCSSFRTHLVSVPKIRVFCKPSRNNTNDNG 60

Query: 1666 KRRFVIGRDRSGVPLNPRCGGMPEEDS---------DSRGSSMSALERLKISGADRYTKE 1514
            K R V+ + R+GV    RC  +   DS          ++ SS+SALE+LK S ADRYTKE
Sbjct: 61   KYRRVLAQ-RAGV----RCEVVASTDSAVETDSNIDPAKVSSLSALEQLKTSAADRYTKE 115

Query: 1513 KSSIIVLGLSIHTAPVETREKLAIPEAEYPQAIRELCGFYHIEEAAVLSTCNRVEIYVVA 1334
            ++SI+V+GLS+HTAPVE REKLAIPEAE+P+AI ELC   HI+EAAVLSTCNR+EIYVVA
Sbjct: 116  RASIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCSLNHIDEAAVLSTCNRMEIYVVA 175

Query: 1333 LSWHCGVRDVTEWMEKTSGVAASELRPHLFLLRGSDAINHLFEVSAGLDSLILGDEQILG 1154
            LS H GV++VTEWM KTSG+  SE+  H FLL  +DA  HLFEVSAGLDSL+LG+ QIL 
Sbjct: 176  LSQHRGVKEVTEWMSKTSGIPVSEICEHQFLLYNNDATQHLFEVSAGLDSLVLGEGQILA 235

Query: 1153 RVKQVVNFGEGVTGFGRSLNGLFRYALRVGADVLTKTNIASGPIISVSSAAVELAIIKLP 974
            +VKQVV  G+GV GFGR+++GLF++A+ VG  V T+TNIA+G  +SVSSAAVELA++KLP
Sbjct: 236  QVKQVVKVGQGVVGFGRNISGLFKHAISVGKRVRTETNIAAG-AVSVSSAAVELALMKLP 294

Query: 973  QNLSSTARVLVIGAGKMGRLVINHLVAKGWTKIVVVNRSEHRVDAIREDLSGVEIIYKPL 794
            ++  +TAR+LVIGAGKMG+LVI HLVAKG TK+VVVNRSE RV AIRE++  VEIIYKPL
Sbjct: 295  ESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREEIKDVEIIYKPL 354

Query: 793  TEMLTCAGESDVVFTSTASNIPLFMKDNVETLPPVGTMNGGSRLFFDISVPRNVGSCVSD 614
             EMLTCA E+DVVFTSTAS  PLF+K+NV+ LP V +  G  RLF DISVPRNVGSCV+D
Sbjct: 355  DEMLTCAAEADVVFTSTASETPLFLKENVKDLPSVSSEVGSLRLFVDISVPRNVGSCVND 414

Query: 613  VENTQVYNVDDFKEVLAPKME-------EAQAIVAKNLDDFQDKMDSFETVPTIKNLRAL 455
            VE  +VYNVDD KEV+A   E       EAQAI+ +    F+   DS ETVPTIK LRA 
Sbjct: 415  VEKARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFEAWRDSLETVPTIKKLRAY 474

Query: 454  VETIRITELERCLSKIKHDIPKKTRRAIEDLSRGMMNKVLHGPMEHLRCDESNSRPLSEI 275
             E IR+ EL++CLSK+  +IPKKTRRA++DLSRG++NK+LHGPM+HLRCD S+SR LSE 
Sbjct: 475  AERIRVAELDKCLSKMGEEIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSET 534

Query: 274  LENMHALNRMFSLETDASILEQKIRAKMEQ 185
            LENMHALNRMFSLET+ ++LEQK+RAK  Q
Sbjct: 535  LENMHALNRMFSLETEVAVLEQKLRAKTSQ 564


>ref|XP_002301105.1| predicted protein [Populus trichocarpa] gi|222842831|gb|EEE80378.1|
            predicted protein [Populus trichocarpa]
          Length = 468

 Score =  620 bits (1600), Expect = e-175
 Identities = 322/468 (68%), Positives = 385/468 (82%), Gaps = 7/468 (1%)
 Frame = -2

Query: 1567 MSALERLKISGADRYTKEKSSIIVLGLSIHTAPVETREKLAIPEAEYPQAIRELCGFYHI 1388
            MSALE+LK S  DRYTKE++SI+V+GLSIHTAPVE REKLAIPEAE+P+AI ELCG  HI
Sbjct: 1    MSALEQLKTSAVDRYTKERASIVVIGLSIHTAPVEMREKLAIPEAEWPRAIGELCGLNHI 60

Query: 1387 EEAAVLSTCNRVEIYVVALSWHCGVRDVTEWMEKTSGVAASELRPHLFLLRGSDAINHLF 1208
            EEAAVLSTCNR+EIYVVALS H GV++VTEWM KTSGV  SE+  H FLL  +DA  HLF
Sbjct: 61   EEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGVPVSEICEHRFLLYNNDATQHLF 120

Query: 1207 EVSAGLDSLILGDEQILGRVKQVVNFGEGVTGFGRSLNGLFRYALRVGADVLTKTNIASG 1028
            EVSAGLDSL+LG+ QIL +VKQVV  G+GV GFGR+++GLF++A+ VG  V T+TNIA+G
Sbjct: 121  EVSAGLDSLVLGEGQILAQVKQVVKGGQGVVGFGRNISGLFKHAITVGKRVRTETNIAAG 180

Query: 1027 PIISVSSAAVELAIIKLPQNLSSTARVLVIGAGKMGRLVINHLVAKGWTKIVVVNRSEHR 848
              +SVSSAAVELA++KLP++  ++AR+LVIGAGKMG+LVI HLVAKG TK+VVVNR+  R
Sbjct: 181  -AVSVSSAAVELALMKLPESSHASARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRTGDR 239

Query: 847  VDAIREDLSGVEIIYKPLTEMLTCAGESDVVFTSTASNIPLFMKDNVETLPPVGTMNGGS 668
            V AIRE+L  VEIIYKP  +MLTCA E+DVVFTST+S  PLF++D+V+ LPPVG+  GGS
Sbjct: 240  VAAIREELKDVEIIYKPFPDMLTCAAEADVVFTSTSSETPLFVRDDVKDLPPVGSEVGGS 299

Query: 667  RLFFDISVPRNVGSCVSDVENTQVYNVDDFKEVLAPKME-------EAQAIVAKNLDDFQ 509
            RLF DISVPRNVGSCVSD+EN +VYNVDD KEV+A   E       EAQAI+ +    F+
Sbjct: 300  RLFVDISVPRNVGSCVSDLENVRVYNVDDLKEVVAANKEDRLRKAMEAQAIINEESKQFE 359

Query: 508  DKMDSFETVPTIKNLRALVETIRITELERCLSKIKHDIPKKTRRAIEDLSRGMMNKVLHG 329
               DS ETVPTIK LRA  E IR+ ELE+CLSK+  DI KKTRRA++DLSRG++NK+LHG
Sbjct: 360  AWRDSLETVPTIKKLRAYAERIRLAELEKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHG 419

Query: 328  PMEHLRCDESNSRPLSEILENMHALNRMFSLETDASILEQKIRAKMEQ 185
            PM+HLRCD S+SR LSE LENMHALNRMFSLET+ ++LEQKIRAK  Q
Sbjct: 420  PMQHLRCDGSDSRTLSETLENMHALNRMFSLETEVAVLEQKIRAKQSQ 467


>ref|XP_004148403.1| PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Cucumis
            sativus] gi|2495155|sp|P93111.1|HEM11_CUCSA RecName:
            Full=Glutamyl-tRNA reductase 1, chloroplastic;
            Short=GluTR; Flags: Precursor gi|1694926|dbj|BAA08910.1|
            glutamyl-tRNA reductase [Cucumis sativus]
          Length = 552

 Score =  619 bits (1597), Expect = e-175
 Identities = 319/481 (66%), Positives = 390/481 (81%), Gaps = 7/481 (1%)
 Frame = -2

Query: 1597 EEDSDSRGSSMSALERLKISGADRYTKEKSSIIVLGLSIHTAPVETREKLAIPEAEYPQA 1418
            +E    + S++SALE+LK S  DRYTKE+SSI+V+GLSIHT PVE REKLAIPEAE+P+A
Sbjct: 73   DEIDPPKSSNLSALEQLKTSAVDRYTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRA 132

Query: 1417 IRELCGFYHIEEAAVLSTCNRVEIYVVALSWHCGVRDVTEWMEKTSGVAASELRPHLFLL 1238
            I ELCG  HIEEAAVLSTCNR+EIYVVALS H GV++VTEWM KTSG+  SE+  H FLL
Sbjct: 133  IGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLL 192

Query: 1237 RGSDAINHLFEVSAGLDSLILGDEQILGRVKQVVNFGEGVTGFGRSLNGLFRYALRVGAD 1058
              +DA  H+FEVSAGLDSL+LG+ QIL +VKQVV  G+GV GFGR+++GLF++A+ VG  
Sbjct: 193  YNNDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVAGFGRNISGLFKHAITVGKR 252

Query: 1057 VLTKTNIASGPIISVSSAAVELAIIKLPQNLSSTARVLVIGAGKMGRLVINHLVAKGWTK 878
            V T+TNIA+G  +SVSSAAVELA++KLP+   +TAR+LVIGAGKMG+LVI HLVAKG TK
Sbjct: 253  VRTETNIAAG-AVSVSSAAVELALMKLPEPSHATARMLVIGAGKMGKLVIKHLVAKGCTK 311

Query: 877  IVVVNRSEHRVDAIREDLSGVEIIYKPLTEMLTCAGESDVVFTSTASNIPLFMKDNVETL 698
            +VVVNRSE RV AIRE++  VEIIYKPLTEML+C  E+DV+FTSTAS   LF K+ V+ L
Sbjct: 312  MVVVNRSEERVTAIREEMKDVEIIYKPLTEMLSCTAEADVIFTSTASESLLFTKEQVKDL 371

Query: 697  PPVGTMNGGSRLFFDISVPRNVGSCVSDVENTQVYNVDDFKEVLAPKME-------EAQA 539
            PPVG   GG RLF DISVPRNVG+C++++E+ +VYNVDD KEV+A   E       EAQ+
Sbjct: 372  PPVGHDVGGLRLFIDISVPRNVGACINNLEDVRVYNVDDLKEVVAANKEDRLRKAMEAQS 431

Query: 538  IVAKNLDDFQDKMDSFETVPTIKNLRALVETIRITELERCLSKIKHDIPKKTRRAIEDLS 359
            I+ +    F+   DS ETVPTIK LRA  E IR  ELE+CLSK+  DIPKKTRRA++DLS
Sbjct: 432  IITEESKQFEAWRDSLETVPTIKKLRAYAERIRTAELEKCLSKMGDDIPKKTRRAVDDLS 491

Query: 358  RGMMNKVLHGPMEHLRCDESNSRPLSEILENMHALNRMFSLETDASILEQKIRAKMEQSR 179
            RG++NK+LHGPM+HLRCD S+SR LSE LENMHALNRMFSLET+ ++LEQKIRAK+EQ++
Sbjct: 492  RGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQ 551

Query: 178  K 176
            K
Sbjct: 552  K 552


>ref|XP_003522737.1| PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Glycine
            max]
          Length = 539

 Score =  617 bits (1592), Expect = e-174
 Identities = 321/490 (65%), Positives = 390/490 (79%), Gaps = 10/490 (2%)
 Frame = -2

Query: 1615 RCGGMPEEDSD---SRGSSMSALERLKISGADRYTKEKSSIIVLGLSIHTAPVETREKLA 1445
            RC   P + S    +  +++SALE+LK S ADRYTKE+SSII +GLS+HTAPVE REKLA
Sbjct: 51   RCDAQPSDASSVAPNNATALSALEQLKTSAADRYTKERSSIIAIGLSVHTAPVEMREKLA 110

Query: 1444 IPEAEYPQAIRELCGFYHIEEAAVLSTCNRVEIYVVALSWHCGVRDVTEWMEKTSGVAAS 1265
            IPEAE+P+AI ELC   HIEEAAVLSTCNR+EIYV+ALS H GV++V EWM KTS V  S
Sbjct: 111  IPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVMEWMSKTSSVPVS 170

Query: 1264 ELRPHLFLLRGSDAINHLFEVSAGLDSLILGDEQILGRVKQVVNFGEGVTGFGRSLNGLF 1085
            EL  H FLL  +DA  HLFEVSAGLDSL+LG+ QIL +VKQVV  G+GV GFGR+++GLF
Sbjct: 171  ELSQHRFLLYNNDATQHLFEVSAGLDSLVLGEGQILSQVKQVVKVGQGVNGFGRNISGLF 230

Query: 1084 RYALRVGADVLTKTNIASGPIISVSSAAVELAIIKLPQNLSSTARVLVIGAGKMGRLVIN 905
            ++A+ VG  V T+TNIASG  +SVSSAAVELA +KLP+     AR+LVIGAGKMG+LVI 
Sbjct: 231  KHAITVGKRVRTETNIASG-AVSVSSAAVELAYMKLPEASHDNARMLVIGAGKMGKLVIK 289

Query: 904  HLVAKGWTKIVVVNRSEHRVDAIREDLSGVEIIYKPLTEMLTCAGESDVVFTSTASNIPL 725
            HLVAKG  K+VVVNR+E RV AIRE+L  +EIIYKPL+EMLTCAGE+D+VFTSTAS  PL
Sbjct: 290  HLVAKGCKKMVVVNRTEERVAAIREELKDIEIIYKPLSEMLTCAGEADLVFTSTASENPL 349

Query: 724  FMKDNVETLPPVGTMNGGSRLFFDISVPRNVGSCVSDVENTQVYNVDDFKEVLAPKME-- 551
            F+K++V+ LPP     GG R F DISVPRNVGSCVSD+E+ +VYNVDD KEV+A   E  
Sbjct: 350  FLKEHVKDLPPASQEVGGRRFFIDISVPRNVGSCVSDLESVRVYNVDDLKEVVAANKEDR 409

Query: 550  -----EAQAIVAKNLDDFQDKMDSFETVPTIKNLRALVETIRITELERCLSKIKHDIPKK 386
                 EAQAI+A+    F+   DS ETVPTIK LRA  E IR+ ELE+CL K+  DIPKK
Sbjct: 410  LRKAMEAQAIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLGKMGDDIPKK 469

Query: 385  TRRAIEDLSRGMMNKVLHGPMEHLRCDESNSRPLSEILENMHALNRMFSLETDASILEQK 206
            TRRA++DLSRG++NK+LHGPM+HLRCD ++SR LSE LENM+ALNRMF+LET+ S+LE+K
Sbjct: 470  TRRAVDDLSRGIVNKLLHGPMQHLRCDGNDSRTLSETLENMNALNRMFNLETEISVLEEK 529

Query: 205  IRAKMEQSRK 176
            IRAK+EQ++K
Sbjct: 530  IRAKVEQNQK 539


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