BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012194
         (1004 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containi...   346   4e-93
emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]   342   1e-91
ref|XP_002531431.1| pentatricopeptide repeat-containing protein,...   328   1e-87
ref|XP_003593855.1| Pentatricopeptide repeat-containing protein ...   325   1e-86
ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containi...   316   5e-84

>ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  346 bits (888), Expect = 4e-93
 Identities = 175/254 (68%), Positives = 207/254 (81%), Gaps = 2/254 (0%)
 Frame = -1

Query: 758 VLDSFDA--KTSKGNELKVVSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRALKP 585
           VL+SF    + ++G        +E RHPLVRE+CRLI+ R +WNPKLE EL+HLLR+LKP
Sbjct: 42  VLNSFTGGYRQTEGIRRFEGGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKP 101

Query: 584 LEVCGVLRSQADIRIALSFFYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILRLMK 405
            +VC VL+ Q D R+AL FFYWADRQWRYRH P V YAMLE+LS TKL + AKR+LRLM 
Sbjct: 102 RQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMA 161

Query: 404 RRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLE 225
           +R IERRPEAFGYVMVSYSRAGKLRNAMRVL +MQKAG+EPDLSICNTA+HVLVM NRL+
Sbjct: 162 KRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLD 221

Query: 224 KAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRVEDALQLIXXXXXXXXXCHPDKISYYT 45
           KAVRFL+RMQ V I PNV++YNCLIKGYCD++R+EDA++LI         C PDKISYYT
Sbjct: 222 KAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELI--AEMPFKGCSPDKISYYT 279

Query: 44  VIGFLCKGKRIEKV 3
           V+GFLCK KRI++V
Sbjct: 280 VMGFLCKEKRIKEV 293



 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
 Frame = -1

Query: 383 PEAFGY--VMVSYSRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLEKAVRF 210
           P A  Y  +M  + R GK   A  ++  M K G  P     N  +  L    ++++A RF
Sbjct: 448 PNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRF 507

Query: 209 LDRMQRVGISPNVVSYNCLIKGYCDVYRVEDALQLIXXXXXXXXXCHPDKISYYTVIGFL 30
           +++    G + NVV++  +I G+C    +E AL L+          HPD ++Y T+I  L
Sbjct: 508 MEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLL--DDMYLSNKHPDVVTYTTIIDAL 565

Query: 29  CKGKRIEK 6
            K  RIE+
Sbjct: 566 GKKGRIEE 573



 Score = 57.0 bits (136), Expect = 7e-06
 Identities = 42/161 (26%), Positives = 71/161 (44%)
 Frame = -1

Query: 488 PEVLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLN 309
           P  +  +++ L   +   EAKR +      G       F  V+  + +   L  A+ +L+
Sbjct: 485 PVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLD 544

Query: 308 LMQKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVY 129
            M  +   PD+    T +  L    R+E+A +   +M RVG+ P  V+Y  +I  YC + 
Sbjct: 545 DMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMG 604

Query: 128 RVEDALQLIXXXXXXXXXCHPDKISYYTVIGFLCKGKRIEK 6
           RVED L+L+             + +Y  VI  LC    +E+
Sbjct: 605 RVEDLLKLLEKMLSRQEC----RTAYNQVIEKLCSFGNLEQ 641


>emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  342 bits (876), Expect = 1e-91
 Identities = 173/254 (68%), Positives = 205/254 (80%), Gaps = 2/254 (0%)
 Frame = -1

Query: 758 VLDSFDA--KTSKGNELKVVSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRALKP 585
           VL+SF    + ++G        +E RHPLVRE+CRLI+ R +WNPKLE EL+HLLR+LKP
Sbjct: 42  VLNSFTGGYRQTEGIRRFEGGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKP 101

Query: 584 LEVCGVLRSQADIRIALSFFYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILRLMK 405
            +VC VL+ Q D R+AL FFYWADRQWRYRH P V YAMLE+LS TKL + AKR+LRLM 
Sbjct: 102 RQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMA 161

Query: 404 RRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLE 225
           +R IERRPEAFGYVMVSYSRAGKLRNAMR L +MQKAG+EPDLSICNTA+HVLVM NRL+
Sbjct: 162 KRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLD 221

Query: 224 KAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRVEDALQLIXXXXXXXXXCHPDKISYYT 45
           KAVRFL+RMQ V I PNV++YNCLIKGYCD++R+EDA +LI         C PDKISYYT
Sbjct: 222 KAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELI--AEMPFKGCSPDKISYYT 279

Query: 44  VIGFLCKGKRIEKV 3
           V+GFLCK KRI+++
Sbjct: 280 VMGFLCKEKRIKEL 293



 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
 Frame = -1

Query: 383 PEAFGY--VMVSYSRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLEKAVRF 210
           P A  Y  +M  + R GK   A  ++  M K G  P     N  +  L    ++++A RF
Sbjct: 448 PNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRF 507

Query: 209 LDRMQRVGISPNVVSYNCLIKGYCDVYRVEDALQLIXXXXXXXXXCHPDKISYYTVIGFL 30
           +++    G + NVV++  +I G+C    +E AL L+          HPD ++Y T+I  L
Sbjct: 508 MEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLL--DDMYLSNKHPDVVTYTTIIDAL 565

Query: 29  CKGKRIEK 6
            K  RIE+
Sbjct: 566 GKKGRIEE 573


>ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528950|gb|EEF30943.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 737

 Score =  328 bits (842), Expect = 1e-87
 Identities = 162/235 (68%), Positives = 195/235 (82%)
 Frame = -1

Query: 707 VSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRALKPLEVCGVLRSQADIRIALSF 528
           +  EE RHPLVREVCRLI+ R +WN KLE +L+ LLR+LKP +VC VL+ Q+D RIAL F
Sbjct: 63  IEEEEFRHPLVREVCRLIERRSAWNAKLEGDLRRLLRSLKPRQVCAVLQLQSDERIALDF 122

Query: 527 FYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYS 348
           FYWA RQWRYRH P V Y ML++LS TKL + A+R+LRLM RRGI RRPEAF +VMVSYS
Sbjct: 123 FYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYS 182

Query: 347 RAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVV 168
           RAGKLRNAM+VL +MQKAGVEP+L ICNTA+HVLVMAN+LEKA+RFL+RMQ VGI+PNVV
Sbjct: 183 RAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVV 242

Query: 167 SYNCLIKGYCDVYRVEDALQLIXXXXXXXXXCHPDKISYYTVIGFLCKGKRIEKV 3
           +YNCLIKGYCD+Y+VE A++LI           PDK+SYYTV+GFLC+ KRI++V
Sbjct: 243 TYNCLIKGYCDLYQVEHAMELIAEMPFKGCP--PDKVSYYTVMGFLCQDKRIKEV 295



 Score = 57.0 bits (136), Expect = 7e-06
 Identities = 31/111 (27%), Positives = 53/111 (47%)
 Frame = -1

Query: 470 MLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAG 291
           ++ +LS      EA   LR  + RG +     +  ++ S+   G++  A  ++N M   G
Sbjct: 318 LVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKG 377

Query: 290 VEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYC 138
             PD+      V+ L    ++E+A + L +M + G  PN VSY  L+ G C
Sbjct: 378 CSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLC 428


>ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482903|gb|AES64106.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  325 bits (833), Expect = 1e-86
 Identities = 161/257 (62%), Positives = 194/257 (75%), Gaps = 4/257 (1%)
 Frame = -1

Query: 761 QVLDSFDAKTSKGNELKV----VSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRA 594
           + + SFD   S      +    +   E RHP+VREVCRLI  R +WNPK E  L+HLLR+
Sbjct: 102 EFISSFDGNGSNKQRENIARFEIDESEFRHPIVREVCRLISLRSNWNPKFEENLRHLLRS 161

Query: 593 LKPLEVCGVLRSQADIRIALSFFYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILR 414
           L P  VC VLRSQ D RIAL FFYWADRQWRYRH   V Y ML++LS T+L + A+RILR
Sbjct: 162 LNPRLVCAVLRSQDDERIALDFFYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILR 221

Query: 413 LMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMAN 234
           LM RRGIER PEAF YVMVSYSRAG LRNA+R+L LMQKAGVEPDLSICNTA++VLV  N
Sbjct: 222 LMTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGN 281

Query: 233 RLEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRVEDALQLIXXXXXXXXXCHPDKIS 54
           +LEKA+RFL+RM+  GI P++VSYNCLIKGYCDV+R++DAL+LI           PDK+S
Sbjct: 282 KLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCP--PDKVS 339

Query: 53  YYTVIGFLCKGKRIEKV 3
           YYTV+ FLCK +++E+V
Sbjct: 340 YYTVMAFLCKDRKVEEV 356


>ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  316 bits (810), Expect = 5e-84
 Identities = 160/256 (62%), Positives = 192/256 (75%), Gaps = 3/256 (1%)
 Frame = -1

Query: 761 QVLDSFDAKTSKGNELKV---VSREEIRHPLVREVCRLIQFRPSWNPKLEYELKHLLRAL 591
           + + SF  K  K  +      +   E RHP+VREVCRLI    +WNP  E  L+HLLR+L
Sbjct: 106 EFITSFHGKNDKQTQSIARVEIGDSEFRHPVVREVCRLITLSSAWNPNFEGRLRHLLRSL 165

Query: 590 KPLEVCGVLRSQADIRIALSFFYWADRQWRYRHAPEVLYAMLELLSGTKLRKEAKRILRL 411
           KP  VC VLRSQAD R+AL+FFYWADRQWRY H P V Y ML++LS TKL + A+R+LRL
Sbjct: 166 KPPLVCAVLRSQADERVALNFFYWADRQWRYSHHPVVYYTMLDVLSKTKLCQGARRVLRL 225

Query: 410 MKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAGVEPDLSICNTAVHVLVMANR 231
           M RRGIE  PEAFGYVMVSYSRAGKLRNA+RVL LMQKAGVEP LSICNT ++VLV   +
Sbjct: 226 MTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGK 285

Query: 230 LEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRVEDALQLIXXXXXXXXXCHPDKISY 51
           LEKA++FL+RMQ  GI P++V+YN LIKGYCD+ R+EDAL+LI           PDK+SY
Sbjct: 286 LEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCP--PDKVSY 343

Query: 50  YTVIGFLCKGKRIEKV 3
           YTV+GFLCK K+IE+V
Sbjct: 344 YTVMGFLCKEKKIEEV 359