BLASTX nr result

ID: Coptis24_contig00012192 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012192
         (419 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266683.1| PREDICTED: uncharacterized protein LOC100253...   191   5e-47
ref|XP_002523304.1| conserved hypothetical protein [Ricinus comm...   189   2e-46
ref|XP_002302649.1| predicted protein [Populus trichocarpa] gi|2...   186   1e-45
gb|AFK39850.1| unknown [Medicago truncatula]                          184   6e-45
ref|XP_002320878.1| predicted protein [Populus trichocarpa] gi|2...   184   8e-45

>ref|XP_002266683.1| PREDICTED: uncharacterized protein LOC100253490 [Vitis vinifera]
           gi|147767788|emb|CAN66977.1| hypothetical protein
           VITISV_022080 [Vitis vinifera]
          Length = 262

 Score =  191 bits (485), Expect = 5e-47
 Identities = 91/132 (68%), Positives = 107/132 (81%)
 Frame = -1

Query: 419 GVVLSCLNCFLGNGSLYCFEYGVTLSVFIAKVRGGMCTTAASDPPEPVIHRALYLLQNGF 240
           GVVLSCL+CFLG GSLY FEYGVT SVF+AKVRGG CTTA SDPP+ VIHRA+YLLQNGF
Sbjct: 84  GVVLSCLDCFLGKGSLYSFEYGVTPSVFLAKVRGGTCTTATSDPPDAVIHRAMYLLQNGF 143

Query: 239 GNFDIFPNNSEDFALYCKTSFLVLDKSRMGMTGQACSLISATFTALLSSPLNMSRQQRVG 60
           GN+D+F NN EDFALYCKT  L++DKS +G +GQA S+I A   A+LSSPL +     VG
Sbjct: 144 GNYDVFQNNCEDFALYCKTGLLIVDKSGVGRSGQASSVIGAPLAAILSSPLKLLMPSPVG 203

Query: 59  LATLTAGTYFLS 24
           +AT+TAG Y +S
Sbjct: 204 VATVTAGMYCMS 215


>ref|XP_002523304.1| conserved hypothetical protein [Ricinus communis]
           gi|223537392|gb|EEF39020.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 258

 Score =  189 bits (480), Expect = 2e-46
 Identities = 92/132 (69%), Positives = 106/132 (80%)
 Frame = -1

Query: 419 GVVLSCLNCFLGNGSLYCFEYGVTLSVFIAKVRGGMCTTAASDPPEPVIHRALYLLQNGF 240
           GVVLSCL+CFL NGSLY FEYGV  SVF+AKVRGG CTTAASDPPE VIHRA+YLLQNGF
Sbjct: 81  GVVLSCLDCFLRNGSLYSFEYGVPPSVFLAKVRGGTCTTAASDPPEAVIHRAMYLLQNGF 140

Query: 239 GNFDIFPNNSEDFALYCKTSFLVLDKSRMGMTGQACSLISATFTALLSSPLNMSRQQRVG 60
           GN+DIF NN EDFA+YCKT  L++DK  +G +GQA S+I A   ALLSSPL +     VG
Sbjct: 141 GNYDIFQNNCEDFAMYCKTGLLIMDKLGVGRSGQASSVIGAPLAALLSSPLKLLMPSPVG 200

Query: 59  LATLTAGTYFLS 24
           +AT+TAG Y +S
Sbjct: 201 VATVTAGMYCMS 212


>ref|XP_002302649.1| predicted protein [Populus trichocarpa] gi|222844375|gb|EEE81922.1|
           predicted protein [Populus trichocarpa]
          Length = 261

 Score =  186 bits (473), Expect = 1e-45
 Identities = 88/132 (66%), Positives = 107/132 (81%)
 Frame = -1

Query: 419 GVVLSCLNCFLGNGSLYCFEYGVTLSVFIAKVRGGMCTTAASDPPEPVIHRALYLLQNGF 240
           GVVLSCL+CFL  GSLYCFEYGV  +VF+AKVRGG CTTAASDPPE VIHRA+YLLQNGF
Sbjct: 84  GVVLSCLDCFLKKGSLYCFEYGVPPTVFLAKVRGGTCTTAASDPPETVIHRAMYLLQNGF 143

Query: 239 GNFDIFPNNSEDFALYCKTSFLVLDKSRMGMTGQACSLISATFTALLSSPLNMSRQQRVG 60
           GN+D+F NN EDFA+YCKT  LV+D+  +G +GQA ++I A   A+LSSPLN+     VG
Sbjct: 144 GNYDVFQNNCEDFAMYCKTGLLVMDRLGVGRSGQASTVIGAPLAAILSSPLNLLIPSPVG 203

Query: 59  LATLTAGTYFLS 24
           +AT+TAG + +S
Sbjct: 204 VATVTAGMFCMS 215


>gb|AFK39850.1| unknown [Medicago truncatula]
          Length = 259

 Score =  184 bits (467), Expect = 6e-45
 Identities = 84/132 (63%), Positives = 105/132 (79%)
 Frame = -1

Query: 419 GVVLSCLNCFLGNGSLYCFEYGVTLSVFIAKVRGGMCTTAASDPPEPVIHRALYLLQNGF 240
           GVVLSCL+CFL NGSLYCFEYGV+ ++F+ ++RGG CTTA  DPPE VIHRA+YLLQNGF
Sbjct: 81  GVVLSCLDCFLRNGSLYCFEYGVSPTLFLTRIRGGTCTTALPDPPETVIHRAMYLLQNGF 140

Query: 239 GNFDIFPNNSEDFALYCKTSFLVLDKSRMGMTGQACSLISATFTALLSSPLNMSRQQRVG 60
           GN+D+F NN EDFA+YCKT  L++DK  +G +GQA S+I A   A+LSSPL +     VG
Sbjct: 141 GNYDVFQNNCEDFAMYCKTGLLIVDKQGVGRSGQASSVIGAPLAAMLSSPLKLLMPSPVG 200

Query: 59  LATLTAGTYFLS 24
           +AT+TAG Y +S
Sbjct: 201 MATVTAGMYCMS 212


>ref|XP_002320878.1| predicted protein [Populus trichocarpa] gi|222861651|gb|EEE99193.1|
           predicted protein [Populus trichocarpa]
          Length = 261

 Score =  184 bits (466), Expect = 8e-45
 Identities = 88/132 (66%), Positives = 105/132 (79%)
 Frame = -1

Query: 419 GVVLSCLNCFLGNGSLYCFEYGVTLSVFIAKVRGGMCTTAASDPPEPVIHRALYLLQNGF 240
           GVVLSCL+CFL  GSLY FEYGV  +VFIAKVRGG CTTAASDPPE VIHRA+YLLQNGF
Sbjct: 84  GVVLSCLDCFLKKGSLYSFEYGVPPTVFIAKVRGGTCTTAASDPPETVIHRAMYLLQNGF 143

Query: 239 GNFDIFPNNSEDFALYCKTSFLVLDKSRMGMTGQACSLISATFTALLSSPLNMSRQQRVG 60
           GN+D+F NN EDFA+YCKT  L++D+  +G +GQA S+I A   A+LSSPL +     VG
Sbjct: 144 GNYDVFHNNCEDFAMYCKTGLLIMDRLGVGRSGQASSVIGAPLAAILSSPLKLLMPSPVG 203

Query: 59  LATLTAGTYFLS 24
           +AT+TAG Y +S
Sbjct: 204 VATVTAGMYCMS 215


Top