BLASTX nr result
ID: Coptis24_contig00012144
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00012144 (347 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-... 59 3e-07 ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-... 59 3e-07 ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-... 58 9e-07 ref|XP_002309928.1| chromatin remodeling complex subunit [Populu... 55 6e-06 >ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis sativus] Length = 565 Score = 59.3 bits (142), Expect = 3e-07 Identities = 32/48 (66%), Positives = 35/48 (72%), Gaps = 7/48 (14%) Frame = +3 Query: 129 EEKPQKVKIEGRRRLCKVSSR--DAEENDDG-----PNFSGIMDFDSP 251 EEKP KVKI GRRRLCK+SSR D +N +G PNFSGI DFDSP Sbjct: 39 EEKPTKVKINGRRRLCKLSSREDDCLDNPEGFYFNAPNFSGITDFDSP 86 >ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis sativus] Length = 1016 Score = 59.3 bits (142), Expect = 3e-07 Identities = 32/48 (66%), Positives = 35/48 (72%), Gaps = 7/48 (14%) Frame = +3 Query: 129 EEKPQKVKIEGRRRLCKVSSR--DAEENDDG-----PNFSGIMDFDSP 251 EEKP KVKI GRRRLCK+SSR D +N +G PNFSGI DFDSP Sbjct: 39 EEKPTKVKINGRRRLCKLSSRENDCLDNPEGFYFNAPNFSGITDFDSP 86 >ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera] gi|296088517|emb|CBI37508.3| unnamed protein product [Vitis vinifera] Length = 1043 Score = 57.8 bits (138), Expect = 9e-07 Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 6/48 (12%) Frame = +3 Query: 126 EEEKPQKVKIEGRRRLCKVSSRDAEEN---DDG---PNFSGIMDFDSP 251 EEEKP KVK++GRRRLCK+SS D +EN DG P FS I DFDSP Sbjct: 59 EEEKPVKVKLQGRRRLCKLSSNDDDENTKTGDGFYEPKFSEISDFDSP 106 >ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222852831|gb|EEE90378.1| chromatin remodeling complex subunit [Populus trichocarpa] Length = 1108 Score = 55.1 bits (131), Expect = 6e-06 Identities = 30/48 (62%), Positives = 32/48 (66%), Gaps = 6/48 (12%) Frame = +3 Query: 126 EEEKPQKVKIEGRRRLCKVSSRD------AEENDDGPNFSGIMDFDSP 251 EEEKP KV+IEGRRRLCKVSS D EE D +F I DFDSP Sbjct: 84 EEEKPTKVRIEGRRRLCKVSSGDDGDDASREEVKDDSSFDDIADFDSP 131