BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012144
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-...    59   3e-07
ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-...    59   3e-07
ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-...    58   9e-07
ref|XP_002309928.1| chromatin remodeling complex subunit [Populu...    55   6e-06

>ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis
           sativus]
          Length = 565

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/48 (66%), Positives = 35/48 (72%), Gaps = 7/48 (14%)
 Frame = +3

Query: 129 EEKPQKVKIEGRRRLCKVSSR--DAEENDDG-----PNFSGIMDFDSP 251
           EEKP KVKI GRRRLCK+SSR  D  +N +G     PNFSGI DFDSP
Sbjct: 39  EEKPTKVKINGRRRLCKLSSREDDCLDNPEGFYFNAPNFSGITDFDSP 86


>ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis
           sativus]
          Length = 1016

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/48 (66%), Positives = 35/48 (72%), Gaps = 7/48 (14%)
 Frame = +3

Query: 129 EEKPQKVKIEGRRRLCKVSSR--DAEENDDG-----PNFSGIMDFDSP 251
           EEKP KVKI GRRRLCK+SSR  D  +N +G     PNFSGI DFDSP
Sbjct: 39  EEKPTKVKINGRRRLCKLSSRENDCLDNPEGFYFNAPNFSGITDFDSP 86


>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
           gi|296088517|emb|CBI37508.3| unnamed protein product
           [Vitis vinifera]
          Length = 1043

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 6/48 (12%)
 Frame = +3

Query: 126 EEEKPQKVKIEGRRRLCKVSSRDAEEN---DDG---PNFSGIMDFDSP 251
           EEEKP KVK++GRRRLCK+SS D +EN    DG   P FS I DFDSP
Sbjct: 59  EEEKPVKVKLQGRRRLCKLSSNDDDENTKTGDGFYEPKFSEISDFDSP 106


>ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222852831|gb|EEE90378.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1108

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 30/48 (62%), Positives = 32/48 (66%), Gaps = 6/48 (12%)
 Frame = +3

Query: 126 EEEKPQKVKIEGRRRLCKVSSRD------AEENDDGPNFSGIMDFDSP 251
           EEEKP KV+IEGRRRLCKVSS D       EE  D  +F  I DFDSP
Sbjct: 84  EEEKPTKVRIEGRRRLCKVSSGDDGDDASREEVKDDSSFDDIADFDSP 131