BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012116
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277363.1| PREDICTED: probable E3 ubiquitin-protein lig...   172   3e-41
emb|CBI27748.3| unnamed protein product [Vitis vinifera]              172   3e-41
ref|XP_002324718.1| predicted protein [Populus trichocarpa] gi|2...   144   1e-32
ref|XP_002516202.1| zinc finger protein, putative [Ricinus commu...   137   1e-30
ref|NP_190937.1| RING/U-box domain-containing protein [Arabidops...   127   7e-28

>ref|XP_002277363.1| PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B-like
           [Vitis vinifera]
          Length = 358

 Score =  172 bits (436), Expect = 3e-41
 Identities = 91/167 (54%), Positives = 105/167 (62%), Gaps = 10/167 (5%)
 Frame = +2

Query: 2   DDDEVQVL-----TNP--FRKTKPFRYPSVTETGQSSNSQV---PTFICEICXXXXXXXX 151
           DDD++Q+L     T P  F   KPF +PSVTETGQ SNS+    PTF+CEIC        
Sbjct: 77  DDDDLQILGINPPTTPHAFSTRKPFTFPSVTETGQPSNSKPDPPPTFVCEICI------- 129

Query: 152 XXXXXXXXXXXXXXXXXXXXXXXXEPKSLNQTFSIKGCTHSYCSDCMSKYVASKIQDNVT 331
                                   +PK LN +FSIKGC HSYCSDCM+KYVASK+QDNV+
Sbjct: 130 ------------------------DPKPLNHSFSIKGCPHSYCSDCMTKYVASKLQDNVS 165

Query: 332 SITCPESNCLGVLELQFCQSILPKEVFDRWGNALCEQLILGAQKFYC 472
            I+CP  NC GVLE Q C+ ILP  VFDRWGNALCE LILG+QKFYC
Sbjct: 166 RISCPAPNCTGVLEPQQCRPILPSHVFDRWGNALCEALILGSQKFYC 212


>emb|CBI27748.3| unnamed protein product [Vitis vinifera]
          Length = 329

 Score =  172 bits (436), Expect = 3e-41
 Identities = 91/167 (54%), Positives = 105/167 (62%), Gaps = 10/167 (5%)
 Frame = +2

Query: 2   DDDEVQVL-----TNP--FRKTKPFRYPSVTETGQSSNSQV---PTFICEICXXXXXXXX 151
           DDD++Q+L     T P  F   KPF +PSVTETGQ SNS+    PTF+CEIC        
Sbjct: 77  DDDDLQILGINPPTTPHAFSTRKPFTFPSVTETGQPSNSKPDPPPTFVCEICI------- 129

Query: 152 XXXXXXXXXXXXXXXXXXXXXXXXEPKSLNQTFSIKGCTHSYCSDCMSKYVASKIQDNVT 331
                                   +PK LN +FSIKGC HSYCSDCM+KYVASK+QDNV+
Sbjct: 130 ------------------------DPKPLNHSFSIKGCPHSYCSDCMTKYVASKLQDNVS 165

Query: 332 SITCPESNCLGVLELQFCQSILPKEVFDRWGNALCEQLILGAQKFYC 472
            I+CP  NC GVLE Q C+ ILP  VFDRWGNALCE LILG+QKFYC
Sbjct: 166 RISCPAPNCTGVLEPQQCRPILPSHVFDRWGNALCEALILGSQKFYC 212


>ref|XP_002324718.1| predicted protein [Populus trichocarpa] gi|222866152|gb|EEF03283.1|
           predicted protein [Populus trichocarpa]
          Length = 307

 Score =  144 bits (362), Expect = 1e-32
 Identities = 76/164 (46%), Positives = 98/164 (59%), Gaps = 7/164 (4%)
 Frame = +2

Query: 2   DDDEVQVL-----TNPFRKTK-PFRYPSVTETGQSSNSQV-PTFICEICXXXXXXXXXXX 160
           +DD+++VL       P RK K P    SV E GQSSNSQ+ P F+C+IC           
Sbjct: 55  EDDDIKVLDFLPEVIPSRKQKEPTFIESVAEKGQSSNSQIDPDFVCQICV---------- 104

Query: 161 XXXXXXXXXXXXXXXXXXXXXEPKSLNQTFSIKGCTHSYCSDCMSKYVASKIQDNVTSIT 340
                                EP  L  +F IKGCTH+YC++CM KYV+SK+Q+N+T I 
Sbjct: 105 ---------------------EPTILKNSFLIKGCTHAYCTECMVKYVSSKLQENITKIC 143

Query: 341 CPESNCLGVLELQFCQSILPKEVFDRWGNALCEQLILGAQKFYC 472
           CP  +C G LE + C+S+LP+ VFDRWGNALCE +ILG+QKFYC
Sbjct: 144 CPVPDCKGALEPEDCRSVLPENVFDRWGNALCEAVILGSQKFYC 187


>ref|XP_002516202.1| zinc finger protein, putative [Ricinus communis]
           gi|223544688|gb|EEF46204.1| zinc finger protein,
           putative [Ricinus communis]
          Length = 400

 Score =  137 bits (344), Expect = 1e-30
 Identities = 68/137 (49%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
 Frame = +2

Query: 65  SVTETGQSSN-SQVPTFICEICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPKSLN 241
           SVTE G SS  +  P F+CEIC                                E K+ +
Sbjct: 189 SVTEKGHSSEPNDHPQFVCEICV-------------------------------ESKTAD 217

Query: 242 QTFSIKGCTHSYCSDCMSKYVASKIQDNVTSITCPESNCLGVLELQFCQSILPKEVFDRW 421
           ++ +I+GCTH+YC+DCM+KYVASKIQ+N+T I CP S C G+LE ++C+SILP+EVFDRW
Sbjct: 218 ESLAIRGCTHAYCTDCMAKYVASKIQENITGIYCPVSGCGGLLEPEYCRSILPQEVFDRW 277

Query: 422 GNALCEQLILGAQKFYC 472
           GNALCE L LG+QKFYC
Sbjct: 278 GNALCEALNLGSQKFYC 294


>ref|NP_190937.1| RING/U-box domain-containing protein [Arabidopsis thaliana]
           gi|6729520|emb|CAB67676.1| putative protein [Arabidopsis
           thaliana] gi|21536688|gb|AAM61020.1| unknown
           [Arabidopsis thaliana] gi|332645607|gb|AEE79128.1|
           RING/U-box domain-containing protein [Arabidopsis
           thaliana]
          Length = 320

 Score =  127 bits (320), Expect = 7e-28
 Identities = 65/157 (41%), Positives = 90/157 (57%)
 Frame = +2

Query: 2   DDDEVQVLTNPFRKTKPFRYPSVTETGQSSNSQVPTFICEICXXXXXXXXXXXXXXXXXX 181
           +DD++++L         F  P   E GQSS+S+  TF CEIC                  
Sbjct: 85  EDDDIRILC--------FAPPIHREKGQSSSSKTATFDCEICV----------------- 119

Query: 182 XXXXXXXXXXXXXXEPKSLNQTFSIKGCTHSYCSDCMSKYVASKIQDNVTSITCPESNCL 361
                         + KS+ ++F I GC+H YC+DC+SKY+A+K+QDN+ SI CP S C 
Sbjct: 120 --------------DSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNILSIECPVSGCS 165

Query: 362 GVLELQFCQSILPKEVFDRWGNALCEQLILGAQKFYC 472
           G LE   C+ ILPKEVFDRWG+ALCE +++ ++KFYC
Sbjct: 166 GRLEPDQCRQILPKEVFDRWGDALCEAVVMRSKKFYC 202