BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012074
         (268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004145496.1| PREDICTED: nuclear nucleic acid-binding prot...    47   3e-07
ref|XP_003603288.1| Nuclear nucleic acid-binding protein C1D [Me...    48   4e-07
ref|XP_002324916.1| predicted protein [Populus trichocarpa] gi|2...    42   5e-07
ref|XP_003526147.1| PREDICTED: uncharacterized protein LOC100795...    44   8e-07
ref|NP_197890.1| Sas10/Utp3/C1D family protein [Arabidopsis thal...    40   1e-06

>ref|XP_004145496.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like [Cucumis
           sativus] gi|449485203|ref|XP_004157098.1| PREDICTED:
           nuclear nucleic acid-binding protein C1D-like [Cucumis
           sativus]
          Length = 211

 Score = 46.6 bits (109), Expect(2) = 3e-07
 Identities = 25/62 (40%), Positives = 39/62 (62%)
 Frame = +3

Query: 54  GVKQ*EVGCTLMQKRKGKFSHQTKNLFGVRTAAQEFLKKARQEILGANNGDIEGPLCHET 233
           G K  ++   + +KRK    +Q+     V+TAA+EFL+KA +E+LG  NG ++GPLC + 
Sbjct: 147 GQKMKQLERNVQKKRK----YQSSEKQSVQTAAKEFLEKAARELLGDCNGGLQGPLCGDA 202

Query: 234 SD 239
            D
Sbjct: 203 LD 204



 Score = 32.7 bits (73), Expect(2) = 3e-07
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   SLPDLTSVQRQSMRDISRGE 61
           SLPDLT  Q+ SMRDISRG+
Sbjct: 127 SLPDLTQEQKLSMRDISRGK 146


>ref|XP_003603288.1| Nuclear nucleic acid-binding protein C1D [Medicago truncatula]
           gi|355492336|gb|AES73539.1| Nuclear nucleic acid-binding
           protein C1D [Medicago truncatula]
           gi|388494354|gb|AFK35243.1| unknown [Medicago
           truncatula]
          Length = 228

 Score = 48.1 bits (113), Expect(2) = 4e-07
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = +3

Query: 96  RKGKFSHQTKNLFGVRTAAQEFLKKARQEILGANNGDIEGPL-CHETSDGADEPMD*F 266
           +K K+    K    V+ AAQEFL+KA++E+ G NNG I+GPL     S+  D+ +D F
Sbjct: 160 QKRKYQSSEKPSISVQAAAQEFLEKAQRELFGGNNGGIKGPLQIDNMSESDDDQIDNF 217



 Score = 30.8 bits (68), Expect(2) = 4e-07
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   SLPDLTSVQRQSMRDISRGE 61
           SLPDLT  Q Q MR++SRGE
Sbjct: 129 SLPDLTPEQLQKMRNLSRGE 148


>ref|XP_002324916.1| predicted protein [Populus trichocarpa] gi|222866350|gb|EEF03481.1|
           predicted protein [Populus trichocarpa]
          Length = 211

 Score = 42.4 bits (98), Expect(2) = 5e-07
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = +3

Query: 105 KFSHQTKNLFGVRTAAQEFLKKARQEILGANNGDIEGPLCHETSDGADEPMD 260
           K  + T     V+ AAQEFL+KA +E+ G N    +GPL    S   D P+D
Sbjct: 160 KRKYDTSEKQSVKAAAQEFLEKAARELFGGNTDGFKGPLVKVDSASDDNPVD 211



 Score = 36.2 bits (82), Expect(2) = 5e-07
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +2

Query: 2   SLPDLTSVQRQSMRDISRGE 61
           SLPDLT  QR+SMRDISRGE
Sbjct: 127 SLPDLTPEQRKSMRDISRGE 146


>ref|XP_003526147.1| PREDICTED: uncharacterized protein LOC100795174 [Glycine max]
          Length = 211

 Score = 43.5 bits (101), Expect(2) = 8e-07
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +3

Query: 90  QKRKGKFSHQTKNLFGVRTAAQEFLKKARQEILGANNGDIEGPLCHETSDGADEPM 257
           QKRK    +Q+     V+ AA+EFL+KA +E+LG N+G I+GPL  +  D  D+ +
Sbjct: 157 QKRK----YQSSEKPSVQAAAKEFLQKAARELLGDNSGGIKGPLQVDILDNDDDEL 208



 Score = 34.3 bits (77), Expect(2) = 8e-07
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 2   SLPDLTSVQRQSMRDISRGE 61
           SLPDLT+ QR++MR+ISRGE
Sbjct: 126 SLPDLTTEQRENMRNISRGE 145


>ref|NP_197890.1| Sas10/Utp3/C1D family protein [Arabidopsis thaliana]
           gi|14190385|gb|AAK55673.1|AF378870_1 AT5g25080/T11H3_90
           [Arabidopsis thaliana] gi|15215877|gb|AAK91482.1|
           AT5g25080/T11H3_90 [Arabidopsis thaliana]
           gi|21593008|gb|AAM64957.1| unknown [Arabidopsis
           thaliana] gi|332006014|gb|AED93397.1| Sas10/Utp3/C1D
           family protein [Arabidopsis thaliana]
          Length = 217

 Score = 39.7 bits (91), Expect(2) = 1e-06
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = +3

Query: 96  RKGKFSHQTKNLFGVRTAAQEFLKKARQEILGANNGDIEGPLCHETSDGADE 251
           RK K+    K    V++AA++FL+KA +EI+G N   ++GPL    +DG+D+
Sbjct: 163 RKRKYQSNEKQ--SVQSAAKDFLEKAAREIIGHNENGLKGPLV-AAADGSDD 211



 Score = 37.7 bits (86), Expect(2) = 1e-06
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   SLPDLTSVQRQSMRDISRGETVRSR 76
           SLPDLTS Q+QS+RD+S+GE  R R
Sbjct: 132 SLPDLTSTQKQSIRDLSKGEKSRIR 156