BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012004
         (994 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35820.3| unnamed protein product [Vitis vinifera]              364   2e-98
ref|XP_002268906.1| PREDICTED: probable complex I intermediate-a...   360   3e-97
ref|XP_002314650.1| predicted protein [Populus trichocarpa] gi|2...   360   3e-97
emb|CAN61795.1| hypothetical protein VITISV_015801 [Vitis vinifera]   355   9e-96
ref|XP_003632879.1| PREDICTED: probable complex I intermediate-a...   350   2e-94

>emb|CBI35820.3| unnamed protein product [Vitis vinifera]
          Length = 225

 Score =  364 bits (934), Expect = 2e-98
 Identities = 173/225 (76%), Positives = 194/225 (86%)
 Frame = -2

Query: 978 MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 799
           MSRFRSL + +++AT+KALTWNV++ +PPSERYIFNFNSKEE+K+WHLYSDSEYGG+S+A
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 798 SLEIDDTEREPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIALKL 619
           SLEI D      GIFSGNLS+D+ E SKW I R GFCGMRSK+FDGFIDL+SYDTIALK+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 618 KGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITKIPLERYLPTWRGNVIDA 439
           KGDGRCYISTIYTENWVNSP Q+EDNSWQAFVFVPKDNWYITKIPL  YLPTWRGNVIDA
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKIPLAHYLPTWRGNVIDA 180

Query: 438 KMEMNPSRIVGMSLSVNXXXXXXXXXXXXGDFKLEMDWIKALRAQ 304
           ++EMNPSRIVGMSLSVN            GDFKLE+DWIKALR Q
Sbjct: 181 EIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRTQ 225


>ref|XP_002268906.1| PREDICTED: probable complex I intermediate-associated protein
           30-like isoform 1 [Vitis vinifera]
          Length = 227

 Score =  360 bits (924), Expect = 3e-97
 Identities = 173/227 (76%), Positives = 194/227 (85%), Gaps = 2/227 (0%)
 Frame = -2

Query: 978 MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 799
           MSRFRSL + +++AT+KALTWNV++ +PPSERYIFNFNSKEE+K+WHLYSDSEYGG+S+A
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 798 SLEIDDTER--EPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIAL 625
           SLEI D        GIFSGNLS+D+ E SKW I R GFCGMRSK+FDGFIDL+SYDTIAL
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 624 KLKGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITKIPLERYLPTWRGNVI 445
           K+KGDGRCYISTIYTENWVNSP Q+EDNSWQAFVFVPKDNWYITKIPL  YLPTWRGNVI
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKIPLAHYLPTWRGNVI 180

Query: 444 DAKMEMNPSRIVGMSLSVNXXXXXXXXXXXXGDFKLEMDWIKALRAQ 304
           DA++EMNPSRIVGMSLSVN            GDFKLE+DWIKALR Q
Sbjct: 181 DAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRTQ 227


>ref|XP_002314650.1| predicted protein [Populus trichocarpa] gi|222863690|gb|EEF00821.1|
           predicted protein [Populus trichocarpa]
          Length = 225

 Score =  360 bits (924), Expect = 3e-97
 Identities = 172/225 (76%), Positives = 191/225 (84%)
 Frame = -2

Query: 978 MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 799
           MSRFRSL + ++DATKKALTWNV+DLMPP+ER IFNFNS+EE+K+WHLYSDSEYGG S+A
Sbjct: 1   MSRFRSLWQASLDATKKALTWNVEDLMPPTERLIFNFNSREELKKWHLYSDSEYGGSSSA 60

Query: 798 SLEIDDTEREPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIALKL 619
           SLE  D     +G+FSGNLS+DV E SKW I+RSGFCGMRSK+FDGFIDLD+YDTIALKL
Sbjct: 61  SLEFMDEGNGLKGVFSGNLSLDVAEGSKWNISRSGFCGMRSKKFDGFIDLDAYDTIALKL 120

Query: 618 KGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITKIPLERYLPTWRGNVIDA 439
           KGDGR YISTIYTENWVNSPGQ EDNSWQAFVFVPKDNWYI +IPL RYLPTWRGNVIDA
Sbjct: 121 KGDGRSYISTIYTENWVNSPGQMEDNSWQAFVFVPKDNWYIARIPLARYLPTWRGNVIDA 180

Query: 438 KMEMNPSRIVGMSLSVNXXXXXXXXXXXXGDFKLEMDWIKALRAQ 304
            MEMN SRI+GMSLSVN            GDFK+E+DWIKA R Q
Sbjct: 181 SMEMNQSRILGMSLSVNAGGGIPGARSGPGDFKVELDWIKAFRTQ 225


>emb|CAN61795.1| hypothetical protein VITISV_015801 [Vitis vinifera]
          Length = 237

 Score =  355 bits (911), Expect = 9e-96
 Identities = 173/237 (72%), Positives = 194/237 (81%), Gaps = 12/237 (5%)
 Frame = -2

Query: 978 MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 799
           MSRFRSL + +++AT+KALTWNV++ +PPSERYIFNFNSKEE+K+WHLYSDSEYGG+S+A
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 798 SLEIDDTEREPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIALKL 619
           SLEI D      GIFSGNLS+D+ E SKW I R GFCGMRSK+FDGFIDL+SYDTIALK+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 618 KGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITK------------IPLER 475
           KGDGRCYISTIYTENWVNSP Q+EDNSWQAFVFVPKDNWYITK            IPL  
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKANLTVILDYHTTIPLAH 180

Query: 474 YLPTWRGNVIDAKMEMNPSRIVGMSLSVNXXXXXXXXXXXXGDFKLEMDWIKALRAQ 304
           YLPTWRGNVIDA++EMNPSRIVGMSLSVN            GDFKLE+DWIKALR Q
Sbjct: 181 YLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRTQ 237


>ref|XP_003632879.1| PREDICTED: probable complex I intermediate-associated protein
           30-like isoform 2 [Vitis vinifera]
          Length = 241

 Score =  350 bits (899), Expect = 2e-94
 Identities = 173/241 (71%), Positives = 194/241 (80%), Gaps = 16/241 (6%)
 Frame = -2

Query: 978 MSRFRSLLRTTIDATKKALTWNVDDLMPPSERYIFNFNSKEEVKRWHLYSDSEYGGLSTA 799
           MSRFRSL + +++AT+KALTWNV++ +PPSERYIFNFNSKEE+K+WHLYSDSEYGG+S+A
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 798 SLEIDDTER--EPRGIFSGNLSMDVTEDSKWRINRSGFCGMRSKRFDGFIDLDSYDTIAL 625
           SLEI D        GIFSGNLS+D+ E SKW I R GFCGMRSK+FDGFIDL+SYDTIAL
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 624 KLKGDGRCYISTIYTENWVNSPGQEEDNSWQAFVFVPKDNWYITK--------------I 487
           K+KGDGRCYISTIYTENWVNSP Q+EDNSWQAFVFVPKDNWYITK              I
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKASSVLLKLILVSFQI 180

Query: 486 PLERYLPTWRGNVIDAKMEMNPSRIVGMSLSVNXXXXXXXXXXXXGDFKLEMDWIKALRA 307
           PL  YLPTWRGNVIDA++EMNPSRIVGMSLSVN            GDFKLE+DWIKALR 
Sbjct: 181 PLAHYLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRT 240

Query: 306 Q 304
           Q
Sbjct: 241 Q 241