BLASTX nr result
ID: Coptis24_contig00011997
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00011997 (200 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003606390.1| DEAD-box ATP-dependent RNA helicase [Medicag... 49 1e-11 ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|2... 47 4e-11 ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 47 5e-11 gb|AAK73153.1|AC079022_26 putative ATP-dependent RNA helicase [O... 48 9e-11 gb|EEC78384.1| hypothetical protein OsI_18162 [Oryza sativa Indi... 48 9e-11 >ref|XP_003606390.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|355507445|gb|AES88587.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] Length = 613 Score = 49.3 bits (116), Expect(2) = 1e-11 Identities = 21/24 (87%), Positives = 22/24 (91%) Frame = -1 Query: 74 GLRFPNVTCIIQYDSPGEASEYVH 3 GL FPNV CIIQYDSPGEA+EYVH Sbjct: 424 GLDFPNVRCIIQYDSPGEATEYVH 447 Score = 45.1 bits (105), Expect(2) = 1e-11 Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 3/36 (8%) Frame = -2 Query: 160 HGTRGQEDRISGF---KTEKSAILLCTDVASRGLDF 62 HG QEDR + F KTEKSA+LL TDV++RGLDF Sbjct: 392 HGNMEQEDRTTSFQAFKTEKSALLLSTDVSARGLDF 427 >ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|222862365|gb|EEE99871.1| predicted protein [Populus trichocarpa] Length = 594 Score = 46.6 bits (109), Expect(2) = 4e-11 Identities = 19/24 (79%), Positives = 21/24 (87%) Frame = -1 Query: 74 GLRFPNVTCIIQYDSPGEASEYVH 3 GL FP V CI+QYDSPGEA+EYVH Sbjct: 404 GLDFPKVRCIVQYDSPGEATEYVH 427 Score = 45.8 bits (107), Expect(2) = 4e-11 Identities = 23/36 (63%), Positives = 26/36 (72%), Gaps = 3/36 (8%) Frame = -2 Query: 160 HGTRGQEDR---ISGFKTEKSAILLCTDVASRGLDF 62 HG QEDR FKTEKSA+LL TD+A+RGLDF Sbjct: 372 HGNMKQEDRRNTFQAFKTEKSALLLSTDIAARGLDF 407 >ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 17-like [Glycine max] Length = 596 Score = 47.0 bits (110), Expect(2) = 5e-11 Identities = 20/24 (83%), Positives = 21/24 (87%) Frame = -1 Query: 74 GLRFPNVTCIIQYDSPGEASEYVH 3 GL FP V CIIQYDSPGEA+EYVH Sbjct: 406 GLDFPKVRCIIQYDSPGEATEYVH 429 Score = 45.1 bits (105), Expect(2) = 5e-11 Identities = 23/36 (63%), Positives = 26/36 (72%), Gaps = 3/36 (8%) Frame = -2 Query: 160 HGTRGQEDR---ISGFKTEKSAILLCTDVASRGLDF 62 HG QEDR FKTEKSA+LL TDV++RGLDF Sbjct: 374 HGNMQQEDRRTSFQAFKTEKSALLLSTDVSARGLDF 409 >gb|AAK73153.1|AC079022_26 putative ATP-dependent RNA helicase [Oryza sativa] Length = 601 Score = 48.1 bits (113), Expect(2) = 9e-11 Identities = 21/24 (87%), Positives = 21/24 (87%) Frame = -1 Query: 74 GLRFPNVTCIIQYDSPGEASEYVH 3 GL FP V CIIQYDSPGEASEYVH Sbjct: 413 GLDFPKVKCIIQYDSPGEASEYVH 436 Score = 43.1 bits (100), Expect(2) = 9e-11 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 3/36 (8%) Frame = -2 Query: 160 HGTRGQEDR---ISGFKTEKSAILLCTDVASRGLDF 62 HG Q+DR GF +EKSAIL+ TDVA+RGLDF Sbjct: 381 HGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDF 416 >gb|EEC78384.1| hypothetical protein OsI_18162 [Oryza sativa Indica Group] Length = 591 Score = 48.1 bits (113), Expect(2) = 9e-11 Identities = 21/24 (87%), Positives = 21/24 (87%) Frame = -1 Query: 74 GLRFPNVTCIIQYDSPGEASEYVH 3 GL FP V CIIQYDSPGEASEYVH Sbjct: 403 GLDFPKVKCIIQYDSPGEASEYVH 426 Score = 43.1 bits (100), Expect(2) = 9e-11 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 3/36 (8%) Frame = -2 Query: 160 HGTRGQEDR---ISGFKTEKSAILLCTDVASRGLDF 62 HG Q+DR GF +EKSAIL+ TDVA+RGLDF Sbjct: 371 HGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDF 406