BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011996
         (319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase [Ar...    94   1e-17
ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein hel...    93   2e-17
ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] g...    93   2e-17
ref|XP_003284451.1| DEAD/DEAH box helicase [Dictyostelium purpur...    91   1e-16
ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|2...    89   3e-16

>ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]
            gi|2673917|gb|AAB88651.1| putative ATP-dependent RNA
            helicase [Arabidopsis thaliana]
            gi|330255004|gb|AEC10098.1| U5 small nuclear
            ribonucleoprotein helicase [Arabidopsis thaliana]
          Length = 2172

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 8/105 (7%)
 Frame = +3

Query: 6    IESQFLPELPYHLNSEIALGTVKNVGEACHWVGYTHLCTRMSQPFFDLKSRNPTAIG--- 176
            IESQF+ +L   LN+EI LGT++N  EACHW+GYT+L  RM         RNPT  G   
Sbjct: 914  IESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRM--------VRNPTLYGVSP 965

Query: 177  -----DVLSDKFRTELTHAAATILAENNLAKYDPKSGNLHTTEQG 296
                 D+L ++ R +L H+AATIL +NNL KYD KSG+   T+ G
Sbjct: 966  DALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLG 1010


>ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis
            thaliana] gi|334182730|ref|NP_001185050.1| putative U5
            small nuclear ribonucleoprotein helicase [Arabidopsis
            thaliana] gi|4836892|gb|AAD30595.1|AC007369_5 Putative
            RNA helicase [Arabidopsis thaliana]
            gi|332191925|gb|AEE30046.1| putative U5 small nuclear
            ribonucleoprotein helicase [Arabidopsis thaliana]
            gi|332191926|gb|AEE30047.1| putative U5 small nuclear
            ribonucleoprotein helicase [Arabidopsis thaliana]
          Length = 2171

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 52/105 (49%), Positives = 65/105 (61%), Gaps = 8/105 (7%)
 Frame = +3

Query: 6    IESQFLPELPYHLNSEIALGTVKNVGEACHWVGYTHLCTRMSQPFFDLKSRNPTAIG--- 176
            IESQF+ +L   LN+EI LGTV+N  EACHW+GYT+L  RM         RNPT  G   
Sbjct: 913  IESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRM--------VRNPTLYGLAP 964

Query: 177  -----DVLSDKFRTELTHAAATILAENNLAKYDPKSGNLHTTEQG 296
                 DV+ ++ R +L H+AATIL +NNL KYD KSG    T+ G
Sbjct: 965  DALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLG 1009


>ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata]
            gi|297338984|gb|EFH69401.1| EMB1507 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 2171

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 52/105 (49%), Positives = 65/105 (61%), Gaps = 8/105 (7%)
 Frame = +3

Query: 6    IESQFLPELPYHLNSEIALGTVKNVGEACHWVGYTHLCTRMSQPFFDLKSRNPTAIG--- 176
            IESQF+ +L   LN+EI LGTV+N  EACHW+GYT+L  RM         RNPT  G   
Sbjct: 913  IESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRM--------VRNPTLYGLAP 964

Query: 177  -----DVLSDKFRTELTHAAATILAENNLAKYDPKSGNLHTTEQG 296
                 DV+ ++ R +L H+AATIL +NNL KYD KSG    T+ G
Sbjct: 965  DALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLG 1009


>ref|XP_003284451.1| DEAD/DEAH box helicase [Dictyostelium purpureum]
            gi|325085594|gb|EGC38998.1| DEAD/DEAH box helicase
            [Dictyostelium purpureum]
          Length = 2181

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
 Frame = +3

Query: 3    SIESQFLPELPYHLNSEIALGTVKNVGEACHWVGYTHL--CTRMSQPFFDLKSRNPTAIG 176
            SIESQF+  L  +LN+EI LG+++NV +A HW+GYT+L  C   + P +++   +  A  
Sbjct: 917  SIESQFISRLSDNLNAEIVLGSIQNVNDAVHWLGYTYLFICMLRNPPLYEISYDDIEA-- 974

Query: 177  DVLSDKFRTELTHAAATILAENNLAKYDPKSGNLHTTEQG 296
            D   ++ RT+L H+AATIL +N+L KYD KSGNL  TE G
Sbjct: 975  DPHLEQRRTDLIHSAATILEKNSLIKYDRKSGNLQATELG 1014


>ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1|
            predicted protein [Populus trichocarpa]
          Length = 2157

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
 Frame = +3

Query: 6    IESQFLPELPYHLNSEIALGTVKNVGEACHWVGYTHLCTRMSQPFFDLKSRNPTAIG--- 176
            IESQF+ +L   LN+EI LGTV+N  EACHW+GYT+L  RM         RNPT  G   
Sbjct: 893  IESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRM--------LRNPTLYGLAP 944

Query: 177  -----DVLSDKFRTELTHAAATILAENNLAKYDPKSGNLHTTEQG 296
                 D+  ++ R +L H+AA IL +NNL KYD KSG    T+ G
Sbjct: 945  DVLTRDITLEERRADLIHSAAAILDKNNLVKYDRKSGYFQGTDLG 989