BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011987
         (777 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299989.1| predicted protein [Populus trichocarpa] gi|2...   171   2e-40
ref|XP_002285668.1| PREDICTED: U6 snRNA-associated Sm-like prote...   169   6e-40
ref|XP_004152020.1| PREDICTED: U6 snRNA-associated Sm-like prote...   168   1e-39
gb|AFK41754.1| unknown [Lotus japonicus]                              167   3e-39
gb|AFK37213.1| unknown [Medicago truncatula]                          166   4e-39

>ref|XP_002299989.1| predicted protein [Populus trichocarpa]
           gi|224103927|ref|XP_002313247.1| predicted protein
           [Populus trichocarpa] gi|118484238|gb|ABK93999.1|
           unknown [Populus trichocarpa]
           gi|222847247|gb|EEE84794.1| predicted protein [Populus
           trichocarpa] gi|222849655|gb|EEE87202.1| predicted
           protein [Populus trichocarpa]
          Length = 88

 Score =  171 bits (432), Expect = 2e-40
 Identities = 84/88 (95%), Positives = 85/88 (96%)
 Frame = -2

Query: 515 MSTTNPSLLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEG 336
           M+ TNPS LLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT EG
Sbjct: 1   MANTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEG 60

Query: 335 RRITKLDQILLNGNNIAILVPGGSPDPE 252
           RRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RRITKLDQILLNGNNIAILVPGGSPDPE 88


>ref|XP_002285668.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
           [Vitis vinifera] gi|297741927|emb|CBI33362.3| unnamed
           protein product [Vitis vinifera]
          Length = 87

 Score =  169 bits (428), Expect = 6e-40
 Identities = 83/86 (96%), Positives = 85/86 (98%)
 Frame = -2

Query: 509 TTNPSLLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRR 330
           +TNPS LLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGRR
Sbjct: 2   STNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRR 61

Query: 329 ITKLDQILLNGNNIAILVPGGSPDPE 252
           ITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 62  ITKLDQILLNGNNIAILVPGGSPDPE 87


>ref|XP_004152020.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
           sativus] gi|449522508|ref|XP_004168268.1| PREDICTED: U6
           snRNA-associated Sm-like protein LSm5-like [Cucumis
           sativus]
          Length = 87

 Score =  168 bits (426), Expect = 1e-39
 Identities = 83/85 (97%), Positives = 83/85 (97%)
 Frame = -2

Query: 506 TNPSLLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRI 327
           TNPS LLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT EGRRI
Sbjct: 3   TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRI 62

Query: 326 TKLDQILLNGNNIAILVPGGSPDPE 252
           TKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 63  TKLDQILLNGNNIAILVPGGSPDPE 87


>gb|AFK41754.1| unknown [Lotus japonicus]
          Length = 87

 Score =  167 bits (422), Expect = 3e-39
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = -2

Query: 506 TNPSLLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRI 327
           +NPS LLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT EGRRI
Sbjct: 3   SNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRI 62

Query: 326 TKLDQILLNGNNIAILVPGGSPDPE 252
           TKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 63  TKLDQILLNGNNIAILVPGGSPDPE 87


>gb|AFK37213.1| unknown [Medicago truncatula]
          Length = 87

 Score =  166 bits (421), Expect = 4e-39
 Identities = 82/84 (97%), Positives = 82/84 (97%)
 Frame = -2

Query: 503 NPSLLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRIT 324
           NPS LLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT EGRRIT
Sbjct: 4   NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63

Query: 323 KLDQILLNGNNIAILVPGGSPDPE 252
           KLDQILLNGNNIAILVPGGSPDPE
Sbjct: 64  KLDQILLNGNNIAILVPGGSPDPE 87