BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011975
         (1014 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523621.1| ubiquitin-protein ligase, putative [Ricinus ...   342   1e-91
ref|XP_002282881.1| PREDICTED: F-box protein At5g67140 [Vitis vi...   338   9e-91
ref|XP_002306478.1| predicted protein [Populus trichocarpa] gi|2...   326   5e-87
ref|XP_004149695.1| PREDICTED: F-box protein At5g67140-like [Cuc...   324   2e-86
ref|XP_002865025.1| F-box family protein [Arabidopsis lyrata sub...   322   9e-86

>ref|XP_002523621.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223537183|gb|EEF38816.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 227

 Score =  342 bits (876), Expect = 1e-91
 Identities = 164/226 (72%), Positives = 194/226 (85%)
 Frame = -2

Query: 974 MKREAEIDRLPVDILAHIFFLVSSFTHLAQASSVCKKWRQGVKQSLARKDKLSFAGWKMD 795
           M+   EIDRLP+D+LAHIF L++SFT LA ASSVC+KW++GVK+SL R++ LSFAG KMD
Sbjct: 1   MEEGTEIDRLPIDLLAHIFVLINSFTDLAHASSVCRKWKEGVKRSLGRRNSLSFAGLKMD 60

Query: 794 DDSTARIVRYAYNLKELDISRSCWGCQITDDGLYKISVAKCVSNLTSISLWGMTGITDRG 615
           D STAR+VRYAY+LKELDISRS WGCQITD+GLY+IS+AKC+SNLTSISLWGMTGITD+G
Sbjct: 61  DHSTARVVRYAYSLKELDISRSRWGCQITDNGLYEISLAKCISNLTSISLWGMTGITDKG 120

Query: 614 VIQLVSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCH 435
           V+QL+SRA SLQHLNVGGTF+TDESL AIA SCPHLK+IGLWSCR VTE GLI LVN C 
Sbjct: 121 VVQLMSRANSLQHLNVGGTFITDESLCAIADSCPHLKSIGLWSCRHVTEIGLIYLVNKCR 180

Query: 434 KLESINVFGMRVAVDCFIGLLAISPALQIKAGRVHLNVRRIPLLPI 297
           KLESIN +G RV +DCF+ LL +SPAL+IK G   LN+    +LP+
Sbjct: 181 KLESINAWGTRVPIDCFLCLLTVSPALRIKHGGFLLNIGNASMLPV 226


>ref|XP_002282881.1| PREDICTED: F-box protein At5g67140 [Vitis vinifera]
           gi|296082395|emb|CBI21400.3| unnamed protein product
           [Vitis vinifera]
          Length = 232

 Score =  338 bits (868), Expect = 9e-91
 Identities = 161/223 (72%), Positives = 195/223 (87%)
 Frame = -2

Query: 965 EAEIDRLPVDILAHIFFLVSSFTHLAQASSVCKKWRQGVKQSLARKDKLSFAGWKMDDDS 786
           EAEI+RLP+D+LA+IF +++SFT LAQASSVC+KW+QGVKQSL R++ LSFAGW+MDDDS
Sbjct: 9   EAEIERLPMDLLANIFVMLTSFTDLAQASSVCRKWKQGVKQSLGRRESLSFAGWQMDDDS 68

Query: 785 TARIVRYAYNLKELDISRSCWGCQITDDGLYKISVAKCVSNLTSISLWGMTGITDRGVIQ 606
            AR++R+AY LKELDISRS WGCQ+TD+GLYKIS+AKCV+ LTSISLWG+TGITD GV+Q
Sbjct: 69  IARLLRHAYGLKELDISRSRWGCQVTDNGLYKISLAKCVNKLTSISLWGVTGITDSGVVQ 128

Query: 605 LVSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCHKLE 426
           L+SRA SLQHLN+GGTF+TDESL+AIA SCP LK I LWSCR VTE+GL+ LV+ C KL+
Sbjct: 129 LISRAISLQHLNIGGTFITDESLFAIAESCPCLKTIVLWSCRHVTENGLLVLVSKCRKLQ 188

Query: 425 SINVFGMRVAVDCFIGLLAISPALQIKAGRVHLNVRRIPLLPI 297
           SINV+G RV VDCF  LLAI PALQIK GR+ LNV R+ + P+
Sbjct: 189 SINVWGTRVPVDCFFALLAIRPALQIKPGRLLLNVERVSMWPV 231


>ref|XP_002306478.1| predicted protein [Populus trichocarpa] gi|222855927|gb|EEE93474.1|
           predicted protein [Populus trichocarpa]
          Length = 228

 Score =  326 bits (836), Expect = 5e-87
 Identities = 159/225 (70%), Positives = 188/225 (83%)
 Frame = -2

Query: 971 KREAEIDRLPVDILAHIFFLVSSFTHLAQASSVCKKWRQGVKQSLARKDKLSFAGWKMDD 792
           + EAEIDRLP+D++A+IF  + SFT LAQASSVC+KW++GVKQSLA+++ +SFAGWKMDD
Sbjct: 3   REEAEIDRLPIDLVAYIFGFIVSFTDLAQASSVCRKWKEGVKQSLAQRNSMSFAGWKMDD 62

Query: 791 DSTARIVRYAYNLKELDISRSCWGCQITDDGLYKISVAKCVSNLTSISLWGMTGITDRGV 612
            ST R+VR AYNLKELDISRS W CQITD+GLY+IS+A C+ NLTSISLWGM  ITDRGV
Sbjct: 63  VSTTRLVRLAYNLKELDISRSRWDCQITDNGLYQISLANCIGNLTSISLWGMARITDRGV 122

Query: 611 IQLVSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCHK 432
           +QL+SRA SLQHLN+GGTFVTDESL+AIA SCP LK+I LWSCR VTE GL+ L N C K
Sbjct: 123 VQLISRANSLQHLNIGGTFVTDESLFAIADSCPRLKSIVLWSCRHVTEIGLLNLANKCRK 182

Query: 431 LESINVFGMRVAVDCFIGLLAISPALQIKAGRVHLNVRRIPLLPI 297
           LESINV+G RV V+CFI LL ISP+LQIK   V LNV    +LP+
Sbjct: 183 LESINVWGTRVPVNCFIDLLTISPSLQIKPPGVLLNVGGAAILPV 227


>ref|XP_004149695.1| PREDICTED: F-box protein At5g67140-like [Cucumis sativus]
           gi|449508293|ref|XP_004163274.1| PREDICTED: F-box
           protein At5g67140-like [Cucumis sativus]
          Length = 235

 Score =  324 bits (830), Expect = 2e-86
 Identities = 153/211 (72%), Positives = 185/211 (87%)
 Frame = -2

Query: 974 MKREAEIDRLPVDILAHIFFLVSSFTHLAQASSVCKKWRQGVKQSLARKDKLSFAGWKMD 795
           M+ E EIDRLP+D+LAHIF +++SFT LAQA  VC+KW++GVK SL R+  LSFAGWKMD
Sbjct: 14  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 73

Query: 794 DDSTARIVRYAYNLKELDISRSCWGCQITDDGLYKISVAKCVSNLTSISLWGMTGITDRG 615
           D+STAR++R+AY+L+ELDISRS WGC ITD GLY+IS+AKC+ NL SISLWGM GITD+G
Sbjct: 74  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 133

Query: 614 VIQLVSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCH 435
           V+QL+SRA SLQ+LN+GGTFVTD SLYAIA SCP+LK I LWSCR VTE+GL+ LV+ C 
Sbjct: 134 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 193

Query: 434 KLESINVFGMRVAVDCFIGLLAISPALQIKA 342
           KLESINV+GMRV VDCFIGL+AISP+LQIK+
Sbjct: 194 KLESINVWGMRVPVDCFIGLVAISPSLQIKS 224


>ref|XP_002865025.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297310860|gb|EFH41284.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 228

 Score =  322 bits (825), Expect = 9e-86
 Identities = 156/224 (69%), Positives = 182/224 (81%)
 Frame = -2

Query: 974 MKREAEIDRLPVDILAHIFFLVSSFTHLAQASSVCKKWRQGVKQSLARKDKLSFAGWKMD 795
           M  EA IDRLP+D+LA+IF LV+SFT L QAS VCKKWR+ V QS+AR++ LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLVTSFTVLGQASGVCKKWRKAVNQSMARRESLSFAGWKMD 60

Query: 794 DDSTARIVRYAYNLKELDISRSCWGCQITDDGLYKISVAKCVSNLTSISLWGMTGITDRG 615
           DDST+R+V  AYNLKELDISRS WGC ITD+GLY+I+ A+CVSNL S+SLWGMT ITD G
Sbjct: 61  DDSTSRLVHLAYNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 614 VIQLVSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCH 435
           V+QL+SR  SLQHLN+GGTF+TDESL+AIA  C HLK IG+W CR VTE GL+ LVN C 
Sbjct: 121 VVQLISRTSSLQHLNIGGTFITDESLFAIAERCHHLKTIGMWCCRHVTERGLLVLVNKCG 180

Query: 434 KLESINVFGMRVAVDCFIGLLAISPALQIKAGRVHLNVRRIPLL 303
           KLESIN++G RV VDCFI LL ISPALQIK   + LN +  P L
Sbjct: 181 KLESINLWGTRVPVDCFIALLTISPALQIKPMELLLNAQNPPPL 224