BLASTX nr result
ID: Coptis24_contig00011959
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011959
(1292 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi... 140 4e-86
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi... 147 1e-85
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi... 145 2e-85
tpg|DAA43298.1| TPA: vegetative storage protein [Zea mays] 117 2e-71
ref|NP_001147836.1| vegetative storage protein [Zea mays] gi|195... 117 2e-71
>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
gi|449487598|ref|XP_004157706.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 583
Score = 140 bits (352), Expect(3) = 4e-86
Identities = 71/149 (47%), Positives = 91/149 (61%)
Frame = -3
Query: 630 RKMMKVGRVRKEIRQSWIEVLGKVHEFFSRDTGLERTKEVYDKLEELMEAMWKLGYKEVS 451
RK+MK V+K +SWIEV G+ H F + D ER +E+ KL+EL+ + KLGY V
Sbjct: 435 RKLMKERHVKKISGKSWIEVRGEAHVFLAGDRNHERAEEMNAKLKELVGEIEKLGYVPVC 494
Query: 450 DALLHNKDVADDRKTLWYHSEKXXXXXXXXXXXXSQGKALRVVKNLGICKDCH*ALKYMS 271
LH + ++ L YHSEK GKALR++KNL IC+DCH KY S
Sbjct: 495 SETLHKVGEKERKEALLYHSEKLALAYGILTGVAPPGKALRIIKNLRICRDCHLFFKYAS 554
Query: 270 IVIKWEILVRDVNRYHRFMHGSCTCGDHW 184
V+K EI+VRD+NRYHRF +GSCTC D W
Sbjct: 555 RVLKKEIIVRDINRYHRFSYGSCTCADIW 583
Score = 139 bits (349), Expect(3) = 4e-86
Identities = 70/117 (59%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
Frame = -2
Query: 1291 SAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVSGXXXXXXXXXXLEQCRIIHAHAFV 1112
SA++VGLAQN+Q I ALS+F M +S V ST+YSVSG LE+CR+IH+HA V
Sbjct: 177 SALVVGLAQNAQSIRALSMFRQMKASEVASTIYSVSGALRAAADLAALERCRVIHSHAVV 236
Query: 1111 AG-HTEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQGDMNS 944
G T V+V TAL+DGYGKSG + DAR+VFDE L MNI+GWNA++++YAQQGD NS
Sbjct: 237 TGLDTNVIVQTALIDGYGKSGLIIDARQVFDENLGCMNIVGWNAMLSSYAQQGDQNS 293
Score = 88.6 bits (218), Expect(3) = 4e-86
Identities = 49/109 (44%), Positives = 63/109 (57%)
Frame = -1
Query: 956 GYEFSENCFLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXX 777
G E FLAIL++ N+GLV E + WL MI +Y V+P LEH+TC++
Sbjct: 305 GMSPDEYSFLAILSSFCNSGLVSEIKPWLRRMIVEYGVKPTLEHFTCLIDALGRTGKLEE 364
Query: 776 XXXLTKTMPFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSRDDS 630
+ TMPF PD AV R LLS+ A HG +MA M ++LLE N DDS
Sbjct: 365 AERVAMTMPFVPDEAVWRALLSSSASHGAGDMAWTMAKRLLELNQHDDS 413
>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Glycine max]
Length = 561
Score = 147 bits (372), Expect(3) = 1e-85
Identities = 78/149 (52%), Positives = 96/149 (64%)
Frame = -3
Query: 630 RKMMKVGRVRKEIRQSWIEVLGKVHEFFSRDTGLERTKEVYDKLEELMEAMWKLGYKEVS 451
RKMMK RV+K+ +SWIEV G+VH F + D ER+KE+Y KL ELM + KLGY++
Sbjct: 426 RKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQKLAELMGDIEKLGYEKRK 485
Query: 450 DALLHNKDVADDRKTLWYHSEKXXXXXXXXXXXXSQGKALRVVKNLGICKDCH*ALKYMS 271
+AL WYHSEK GK LR+VKNL ICKDCH A KYM+
Sbjct: 486 EAL-------------WYHSEKLAVAFGVLCGPAPPGKPLRIVKNLRICKDCHEAFKYMT 532
Query: 270 IVIKWEILVRDVNRYHRFMHGSCTCGDHW 184
VI+ EI+VRDVNRYHRF++G+CTC D W
Sbjct: 533 RVIEREIIVRDVNRYHRFVNGNCTCSDIW 561
Score = 129 bits (324), Expect(3) = 1e-85
Identities = 66/117 (56%), Positives = 86/117 (73%), Gaps = 1/117 (0%)
Frame = -2
Query: 1291 SAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVSGXXXXXXXXXXLEQCRIIHAHAFV 1112
SA+IV LAQNS+ + A S+F++M ST++SVSG LEQCR++HAHA V
Sbjct: 168 SALIVALAQNSRSVDASSVFSEMRGRGFASTVHSVSGVLRAAAQLAALEQCRMMHAHAVV 227
Query: 1111 AG-HTEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQGDMNS 944
G + VVVG+ALVDGYGK+G V+DARRVF++ L +MN++GWNA+MA YAQQGD S
Sbjct: 228 LGLDSNVVVGSALVDGYGKAGVVNDARRVFEDNLDDMNVVGWNAMMAGYAQQGDYQS 284
Score = 89.4 bits (220), Expect(3) = 1e-85
Identities = 48/103 (46%), Positives = 57/103 (55%)
Frame = -1
Query: 941 ENCFLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXXXXXLT 762
E FLAILTA NAG+ +E W M DY +EP LEHYTC+VG +
Sbjct: 301 EYTFLAILTALCNAGMFLEIAPWFTRMRVDYGLEPSLEHYTCLVGAMARAGELERAERVV 360
Query: 761 KTMPFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSRDD 633
TMP PDAAV R LLS CA GE + A M +++LE DD
Sbjct: 361 LTMPIEPDAAVWRALLSVCAYRGEADKAWSMAKRVLELEPNDD 403
>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Glycine max]
Length = 561
Score = 145 bits (367), Expect(3) = 2e-85
Identities = 76/149 (51%), Positives = 97/149 (65%)
Frame = -3
Query: 630 RKMMKVGRVRKEIRQSWIEVLGKVHEFFSRDTGLERTKEVYDKLEELMEAMWKLGYKEVS 451
RKMMK RV+K+ +SWIEV G+VH F + D ER+KE+Y KL ELM + KLGY++
Sbjct: 426 RKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQKLAELMGDIEKLGYEK-- 483
Query: 450 DALLHNKDVADDRKTLWYHSEKXXXXXXXXXXXXSQGKALRVVKNLGICKDCH*ALKYMS 271
+++LWYHSEK GK LR+VKNL ICKDCH A KYM+
Sbjct: 484 -----------RKESLWYHSEKLAVAFGVLCGSAPPGKPLRIVKNLRICKDCHEAFKYMT 532
Query: 270 IVIKWEILVRDVNRYHRFMHGSCTCGDHW 184
V++ EI+VRDVNRYHRF++G+CTC D W
Sbjct: 533 RVLEREIIVRDVNRYHRFVNGNCTCRDIW 561
Score = 128 bits (322), Expect(3) = 2e-85
Identities = 65/117 (55%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Frame = -2
Query: 1291 SAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVSGXXXXXXXXXXLEQCRIIHAHAFV 1112
SA++V LAQNS+ + ALS+F+DM ST++ VSG LEQCR++HAHA +
Sbjct: 168 SALVVALAQNSRSVDALSVFSDMRCRGFASTVHGVSGGLRAAAQLAALEQCRMMHAHAII 227
Query: 1111 AG-HTEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQGDMNS 944
AG + VVVG+A+VDGYGK+G V DARRVF++ L +MNI GWNA+MA YAQ GD S
Sbjct: 228 AGLDSNVVVGSAVVDGYGKAGVVDDARRVFEDSLDDMNIAGWNAMMAGYAQHGDYQS 284
Score = 90.9 bits (224), Expect(3) = 2e-85
Identities = 49/103 (47%), Positives = 59/103 (57%)
Frame = -1
Query: 941 ENCFLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXXXXXLT 762
E FLAILTA NAG+ +E +W M DY +EP LEHYTC+VG +
Sbjct: 301 EYTFLAILTALCNAGMFLEIYRWFTRMRVDYGLEPSLEHYTCLVGAMARAGELERAERVV 360
Query: 761 KTMPFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSRDD 633
TMPF PDAAV R LLS CA GE + A M +++LE DD
Sbjct: 361 LTMPFEPDAAVWRALLSVCAYRGEADKAWCMAKRVLELEPHDD 403
>tpg|DAA43298.1| TPA: vegetative storage protein [Zea mays]
Length = 563
Score = 117 bits (292), Expect(3) = 2e-71
Identities = 65/141 (46%), Positives = 80/141 (56%)
Frame = -3
Query: 606 VRKEIRQSWIEVLGKVHEFFSRDTGLERTKEVYDKLEELMEAMWKLGYKEVSDALLHNKD 427
VRKE +SWIEV G VH F + + E+ E+YDKL EL++ + KLGYKE
Sbjct: 436 VRKEGGRSWIEVRGLVHVFVANERRHEQLLEIYDKLHELIQEVEKLGYKE---------- 485
Query: 426 VADDRKTLWYHSEKXXXXXXXXXXXXSQGKALRVVKNLGICKDCH*ALKYMSIVIKWEIL 247
AD+R LW+HSE+ GK LR+VKNL IC CH KY S+VI I+
Sbjct: 486 -ADER--LWHHSERLALAYGLISGAAPSGKVLRIVKNLRICAHCHEFFKYASMVIDRVIV 542
Query: 246 VRDVNRYHRFMHGSCTCGDHW 184
VRDVNRYH G C+C W
Sbjct: 543 VRDVNRYHTIKKGDCSCRGCW 563
Score = 102 bits (254), Expect(3) = 2e-71
Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = -2
Query: 1291 SAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVSGXXXXXXXXXXLEQCRIIHAHAFV 1112
S+ IVGLAQN +LS+FA M ++ V STM+++SG LEQ IHAHA V
Sbjct: 170 SSTIVGLAQNGWYEESLSVFAGMRANGVDSTMHALSGSLRAAAGLAVLEQTCGIHAHAVV 229
Query: 1111 AG-HTEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQGDMNSV 941
G V VGTALVD YGK+G V DA +VF+ + + N+I WNA+++A+AQQGD+ V
Sbjct: 230 VGLDGNVAVGTALVDAYGKAGDVDDAAKVFEGLGGDRNLITWNAVLSAHAQQGDVQEV 287
Score = 99.0 bits (245), Expect(3) = 2e-71
Identities = 51/101 (50%), Positives = 59/101 (58%)
Frame = -1
Query: 932 FLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXXXXXLTKTM 753
FLA+LT+C NAG EA+ WL M S Y V+P LEHYTCVVG TM
Sbjct: 306 FLAVLTSCSNAGAATEAKFWLEAMQSKYGVKPDLEHYTCVVGAMARVGHLEDAESFACTM 365
Query: 752 PFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSRDDS 630
P PDAAV R LL C +H +MA M Q+LLE N +DDS
Sbjct: 366 PCKPDAAVWRTLLMGCVVHRRVDMAESMGQRLLEINPKDDS 406
>ref|NP_001147836.1| vegetative storage protein [Zea mays] gi|195614038|gb|ACG28849.1|
vegetative storage protein [Zea mays]
Length = 563
Score = 117 bits (292), Expect(3) = 2e-71
Identities = 65/141 (46%), Positives = 80/141 (56%)
Frame = -3
Query: 606 VRKEIRQSWIEVLGKVHEFFSRDTGLERTKEVYDKLEELMEAMWKLGYKEVSDALLHNKD 427
VRKE +SWIEV G VH F + + E+ E+YDKL EL++ + KLGYKE
Sbjct: 436 VRKEGGRSWIEVRGLVHVFVANERRHEQLLEIYDKLHELIQEVEKLGYKE---------- 485
Query: 426 VADDRKTLWYHSEKXXXXXXXXXXXXSQGKALRVVKNLGICKDCH*ALKYMSIVIKWEIL 247
AD+R LW+HSE+ GK LR+VKNL IC CH KY S+VI I+
Sbjct: 486 -ADER--LWHHSERLALAYGLISGAAPSGKVLRIVKNLRICAHCHEFFKYASMVIDRVIV 542
Query: 246 VRDVNRYHRFMHGSCTCGDHW 184
VRDVNRYH G C+C W
Sbjct: 543 VRDVNRYHTIKKGDCSCRGCW 563
Score = 102 bits (254), Expect(3) = 2e-71
Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = -2
Query: 1291 SAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVSGXXXXXXXXXXLEQCRIIHAHAFV 1112
S+ IVGLAQN +LS+FA M ++ V STM+++SG LEQ IHAHA V
Sbjct: 170 SSTIVGLAQNGWYEESLSVFAGMRANGVDSTMHALSGSLRAAAGLAVLEQTCGIHAHAVV 229
Query: 1111 AG-HTEVVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMAAYAQQGDMNSV 941
G V VGTALVD YGK+G V DA +VF+ + + N+I WNA+++A+AQQGD+ V
Sbjct: 230 VGLDGNVAVGTALVDAYGKAGDVDDAAKVFEGLGGDRNLITWNAVLSAHAQQGDVQEV 287
Score = 99.0 bits (245), Expect(3) = 2e-71
Identities = 51/101 (50%), Positives = 59/101 (58%)
Frame = -1
Query: 932 FLAILTACRNAGLVVEAEKWLICMISDYEVEPGLEHYTCVVGXXXXXXXXXXXXXLTKTM 753
FLA+LT+C NAG EA+ WL M S Y V+P LEHYTCVVG TM
Sbjct: 306 FLAVLTSCSNAGAATEAKFWLEAMQSKYGVKPDLEHYTCVVGAMARVGHLEDAESFACTM 365
Query: 752 PFTPDAAVCRLLLSACAIHGETEMASEMTQKLLEKNSRDDS 630
P PDAAV R LL C +H +MA M Q+LLE N +DDS
Sbjct: 366 PCKPDAAVWRTLLMGCVVHRRVDMAESMGQRLLEINPKDDS 406