BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011944
         (578 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519724.1| chlorophyll A/B binding protein, putative [R...   394   e-108
gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Goss...   391   e-107
dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein...   391   e-107
sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding pro...   391   e-107
ref|XP_002524616.1| chlorophyll A/B binding protein, putative [R...   390   e-107

>ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
           gi|223541141|gb|EEF42697.1| chlorophyll A/B binding
           protein, putative [Ricinus communis]
          Length = 265

 Score =  394 bits (1013), Expect = e-108
 Identities = 185/190 (97%), Positives = 189/190 (99%)
 Frame = -2

Query: 571 KKVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 392
           K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI
Sbjct: 41  KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

Query: 391 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI 212
           HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI
Sbjct: 101 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI 160

Query: 211 WACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 32
           WACQV+LMGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKEIKNGRLA
Sbjct: 161 WACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 220

Query: 31  MFSLFGFFVQ 2
           MFS+FGFFVQ
Sbjct: 221 MFSMFGFFVQ 230


>gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
          Length = 264

 Score =  391 bits (1005), Expect = e-107
 Identities = 186/192 (96%), Positives = 188/192 (97%)
 Frame = -2

Query: 577 TTKKVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 398
           TTK V SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELE
Sbjct: 38  TTKPVPSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELE 97

Query: 397 VIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSIL 218
           VIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSIL
Sbjct: 98  VIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSIL 157

Query: 217 AIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 38
           AIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR
Sbjct: 158 AIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 217

Query: 37  LAMFSLFGFFVQ 2
           LAMFS+FGFFVQ
Sbjct: 218 LAMFSMFGFFVQ 229


>dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
           sylvestris]
          Length = 267

 Score =  391 bits (1004), Expect = e-107
 Identities = 183/190 (96%), Positives = 188/190 (98%)
 Frame = -2

Query: 571 KKVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 392
           K VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI
Sbjct: 43  KPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

Query: 391 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI 212
           HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAI
Sbjct: 103 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI 162

Query: 211 WACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 32
           WACQV+LMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA
Sbjct: 163 WACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 222

Query: 31  MFSLFGFFVQ 2
           MFS+FGFFVQ
Sbjct: 223 MFSMFGFFVQ 232


>sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
           AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
           Precursor gi|19837|emb|CAA41187.1| chlorophyll a /b
           binding protein [Nicotiana tabacum]
          Length = 267

 Score =  391 bits (1004), Expect = e-107
 Identities = 183/190 (96%), Positives = 188/190 (98%)
 Frame = -2

Query: 571 KKVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 392
           K VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI
Sbjct: 43  KPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

Query: 391 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI 212
           HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAI
Sbjct: 103 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI 162

Query: 211 WACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 32
           WACQV+LMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA
Sbjct: 163 WACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 222

Query: 31  MFSLFGFFVQ 2
           MFS+FGFFVQ
Sbjct: 223 MFSMFGFFVQ 232


>ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
           gi|223536169|gb|EEF37824.1| chlorophyll A/B binding
           protein, putative [Ricinus communis]
          Length = 265

 Score =  390 bits (1003), Expect = e-107
 Identities = 184/190 (96%), Positives = 188/190 (98%)
 Frame = -2

Query: 571 KKVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 392
           K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI
Sbjct: 41  KNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

Query: 391 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI 212
           HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI
Sbjct: 101 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI 160

Query: 211 WACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 32
           WA QV+LMGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKEIKNGRLA
Sbjct: 161 WASQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 220

Query: 31  MFSLFGFFVQ 2
           MFS+FGFFVQ
Sbjct: 221 MFSMFGFFVQ 230