BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011875
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...   169   3e-40
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...   151   5e-35
ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score =  169 bits (427), Expect = 3e-40
 Identities = 86/131 (65%), Positives = 98/131 (74%)
 Frame = +2

Query: 2   ILANVHAASKSWDKVADVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSGDTRHERTKEVYD 181
           I+ANV A +  WD+VA+VRKMMK   V+KE GRSWIEVRG+VH F +GD RHER+ E+Y 
Sbjct: 421 IVANVLATNGRWDEVAEVRKMMKDRMVKKEGGRSWIEVRGKVHVFLAGDRRHERSHEIYA 480

Query: 182 KLEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKALRV 361
           KL ELME I +LGYKE               + LWYHSEKLAVAFGVVS AAPPGKALR+
Sbjct: 481 KLVELMEKIEELGYKE-----------GVKKETLWYHSEKLAVAFGVVSDAAPPGKALRI 529

Query: 362 VKNLRICKDCH 394
           VKNLRICKDCH
Sbjct: 530 VKNLRICKDCH 540


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  159 bits (403), Expect = 2e-37
 Identities = 79/130 (60%), Positives = 97/130 (74%)
 Frame = +2

Query: 5   LANVHAASKSWDKVADVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSGDTRHERTKEVYDK 184
           +ANV +++  WD VA++RKMMK  RV+K+ GRSWIEV+GEVH F +GD +HER+KE+Y K
Sbjct: 409 VANVLSSAGRWDDVAELRKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQK 468

Query: 185 LEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKALRVV 364
           L ELM  I KLGY+             +  +ALWYHSEKLAVAFGV+ G APPGK LR+V
Sbjct: 469 LAELMGDIEKLGYE-------------KRKEALWYHSEKLAVAFGVLCGPAPPGKPLRIV 515

Query: 365 KNLRICKDCH 394
           KNLRICKDCH
Sbjct: 516 KNLRICKDCH 525


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  159 bits (402), Expect = 2e-37
 Identities = 78/130 (60%), Positives = 98/130 (75%)
 Frame = +2

Query: 5   LANVHAASKSWDKVADVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSGDTRHERTKEVYDK 184
           +ANV +++  WD VA++RKMMK  RV+K+ GRSWIEV+GEVH F +GD +HER+KE+Y K
Sbjct: 409 VANVLSSAGRWDDVAELRKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQK 468

Query: 185 LEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKALRVV 364
           L ELM  I KLGY+             +  ++LWYHSEKLAVAFGV+ G+APPGK LR+V
Sbjct: 469 LAELMGDIEKLGYE-------------KRKESLWYHSEKLAVAFGVLCGSAPPGKPLRIV 515

Query: 365 KNLRICKDCH 394
           KNLRICKDCH
Sbjct: 516 KNLRICKDCH 525


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score =  151 bits (382), Expect = 5e-35
 Identities = 71/131 (54%), Positives = 95/131 (72%)
 Frame = +2

Query: 2   ILANVHAASKSWDKVADVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSGDTRHERTKEVYD 181
           I++N  + +  W++VA VRK+MK   V+K  G+SWIEVRGE H F +GD  HER +E+  
Sbjct: 417 IVSNALSVAARWEEVALVRKLMKERHVKKISGKSWIEVRGEAHVFLAGDRNHERAEEMNA 476

Query: 182 KLEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKALRV 361
           KL+EL+  I KLGY  V    LH +   E  +AL YHSEKLA+A+G+++G APPGKALR+
Sbjct: 477 KLKELVGEIEKLGYVPVCSETLHKVGEKERKEALLYHSEKLALAYGILTGVAPPGKALRI 536

Query: 362 VKNLRICKDCH 394
           +KNLRIC+DCH
Sbjct: 537 IKNLRICRDCH 547


>ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 858

 Score =  141 bits (355), Expect = 6e-32
 Identities = 65/131 (49%), Positives = 93/131 (70%)
 Frame = +2

Query: 2    ILANVHAASKSWDKVADVRKMMKVGRVRKEIGRSWIEVRGEVHEFFSGDTRHERTKEVYD 181
            +LAN++A++  W+ VA VRK MK  +V+KE G SWIE++ +V+ F  GD  H R+ E+Y 
Sbjct: 694  LLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYA 753

Query: 182  KLEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKALRV 361
            KL++L + + K GY  + +  +HN+D +E  K L++HSEKLAVAFG++  A PPG  +RV
Sbjct: 754  KLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLI--ATPPGGPIRV 811

Query: 362  VKNLRICKDCH 394
             KNLRIC DCH
Sbjct: 812  KKNLRICVDCH 822