BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011857
         (1828 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003589011.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    80   1e-22
ref|XP_004155285.1| PREDICTED: LOW QUALITY PROTEIN: F-box/FBD/LR...    67   6e-21
ref|XP_004135131.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...    67   1e-20
ref|XP_003613781.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    65   9e-19
ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|2...    68   3e-18

>ref|XP_003589011.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
           gi|355478059|gb|AES59262.1| F-box/FBD/LRR-repeat protein
           [Medicago truncatula]
          Length = 528

 Score = 80.1 bits (196), Expect(2) = 1e-22
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 15/169 (8%)
 Frame = +2

Query: 80  DMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQR-----------H 226
           D IS+ P  + D I+S+LP+ DA+RTS+LS+ WRK   TL NL F+ +            
Sbjct: 15  DRISWLPGHVIDQIMSYLPIRDAVRTSVLSRNWRKKWYTLPNLVFDTKLVPVPAATSGDP 74

Query: 227 FFQLENRNLQDFKAFIYQTINLHVESDIELFKL-YVD--QADDEFVCHISEWVSFAFAHH 397
              ++N+ LQ     I   + L     I +FK   VD    +D  V +I  W+       
Sbjct: 75  LAIIDNKFLQ-----IVDHVLLVHSGPINMFKFSNVDDLMGEDSLVTNIDRWILHLIGRS 129

Query: 398 VRQLQLWVLDDECQKFPFCLFSSDSLTSLILVNINLKLPKNVK-FPNLR 541
           +++L L V  D+  K P+CLFS  SL SL L    LK P   + F NL+
Sbjct: 130 IKELVLEVWIDDYYKLPWCLFSCQSLHSLKLNGCLLKPPTMFEGFRNLK 178



 Score = 54.7 bits (130), Expect(2) = 1e-22
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 2/236 (0%)
 Frame = +3

Query: 576  DTADQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQI 755
            D  + F S CP+LE  R +           I APNLKF  +   +             ++
Sbjct: 190  DAFENFISRCPLLEKLRLR--EFYGLTQINIHAPNLKFFEIVGEF-------------EV 234

Query: 756  IFNGTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTRKILLELRTVKELILGPFFIE 935
            +  G       +   SC    +    +  P       +  K       ++ L +  FF++
Sbjct: 235  VTFGNTFQLTTIVIYSCLELTSNSNQSRSPGCS---SNLLKFFDHRPHIQSLEIDGFFLK 291

Query: 936  FLTRGPDLSAQLPVSCSSVEHLHLEM-YPTRNQVHVITLLLRSYPNLQTLRLSVEREQLN 1112
            +L  G  L  +LP  C ++  L L + +    ++     + RS PNLQ L++S  R  + 
Sbjct: 292  YLAAGV-LPVKLPTPCINLSFLSLTINFDNMEEISAALCVFRSSPNLQKLKISALRAHVA 350

Query: 1113 ASMFDLEEHCEIQELRDDGILK-ELKIVEFEYFEGSESELNLVRYLLENANVLEDL 1277
                    +C  +++    ++   ++ V  +   G++SELNL+R+LL  + VLE +
Sbjct: 351  TVPLTPATYCW-EDISSRLVMPFRVRHVTIDGISGTQSELNLIRFLLLYSLVLEKM 405


>ref|XP_004155285.1| PREDICTED: LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein
           At1g13570-like [Cucumis sativus]
          Length = 418

 Score = 67.4 bits (163), Expect(2) = 6e-21
 Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
 Frame = +2

Query: 80  DMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQRHFFQLENRNLQD 259
           D +S  PQ I + I++ LP+ DAIRTSILS++WR   +TL+ L F+        +   +D
Sbjct: 8   DHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIYED 67

Query: 260 FKAFIYQTINLHVESDIELFKL---YVDQADDEFVCHISEWVSFAFAHHVRQLQLWVLDD 430
              FI   + LH E  I  F L   Y+    D     + +W+ F     +R+L + + D 
Sbjct: 68  LIYFITHVLXLH-EGPIHKFHLSATYLQNTPD-----LDQWLLFLSRKGIRELIIELGDG 121

Query: 431 ECQKFPFCLFSSDSLTSLILVNINLKLPKNVK 526
           E  +   CLF+   LT L L    L  P   K
Sbjct: 122 EWFRVHSCLFNCSKLTLLELYRCELDPPPTFK 153



 Score = 61.6 bits (148), Expect(2) = 6e-21
 Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 3/264 (1%)
 Frame = +3

Query: 585  DQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQIIFN 764
            +   SNCP+LE+      S     +  I APNLK+L LE  +            + I   
Sbjct: 174  ESLISNCPLLESLAL---SYFDSLVLNICAPNLKYLYLEGEF------------RDICLQ 218

Query: 765  GTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTRKILLELRTVKELILGPFFIEFLT 944
             TP     L + S +LY       S P  ++ D +  K L  +  +++L    +F ++L+
Sbjct: 219  NTPL----LVSISVALY---MNDESEPFGDLSDCNYEKFLGGVPYLEKLTGHVYFTKYLS 271

Query: 945  RGPDLSAQLPVS---CSSVEHLHLEMYPTRNQVHVITLLLRSYPNLQTLRLSVEREQLNA 1115
             G + + ++P+S     S+E LH   +   N++ V+  L+ S PNL+ L++S     + A
Sbjct: 272  IG-NSARKMPISYIYLKSIE-LHQVSFEDMNEILVVLRLITSSPNLEELQISGSSNPVAA 329

Query: 1116 SMFDLEEHCEIQELRDDGILKELKIVEFEYFEGSESELNLVRYLLENANVLEDLNIIFSK 1295
            S     +  E  E   +    +L++V+     G   E+  ++YLL N  VLE ++I   +
Sbjct: 330  SEAPDLDFWE-NECPSNLTFGKLRVVKATDMSGVPHEMEFIKYLLRNCPVLEIMSI---R 385

Query: 1296 QDQIEATHRIDITEKMQTLTRASP 1367
                    R+++  ++    RASP
Sbjct: 386  PCVYVTDRRLNMLIELLKFRRASP 409


>ref|XP_004135131.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Cucumis
           sativus]
          Length = 418

 Score = 66.6 bits (161), Expect(2) = 1e-20
 Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
 Frame = +2

Query: 80  DMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQRHFFQLENRNLQD 259
           D +S  PQ I + I++ LP+ DAIRTSILS++WR   +TL+ L F+        +   +D
Sbjct: 8   DHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIYED 67

Query: 260 FKAFIYQTINLHVESDIELFKL---YVDQADDEFVCHISEWVSFAFAHHVRQLQLWVLDD 430
              FI   + LH E  I  F L   Y+    D     + +W+ F     +R+L + + D 
Sbjct: 68  LIYFITHVLFLH-EGPIHKFHLSATYLQNTPD-----LDQWLLFLSRKGIRELIIELGDG 121

Query: 431 ECQKFPFCLFSSDSLTSLILVNINLKLPKNVK 526
           E  +   CLF+   LT L L    L  P   K
Sbjct: 122 EWFRVHSCLFNCSKLTLLELYRCELDPPPTFK 153



 Score = 61.6 bits (148), Expect(2) = 1e-20
 Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 3/264 (1%)
 Frame = +3

Query: 585  DQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQIIFN 764
            +   SNCP+LE+      S     +  I APNLK+L LE  +            + I   
Sbjct: 174  ESLISNCPLLESLAL---SYFDSLVLNICAPNLKYLYLEGEF------------RDICLQ 218

Query: 765  GTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTRKILLELRTVKELILGPFFIEFLT 944
             TP     L + S +LY       S P  ++ D +  K L  +  +++L    +F ++L+
Sbjct: 219  NTPL----LVSISVALY---MNDESEPFGDLSDCNYEKFLGGVPYLEKLTGHVYFTKYLS 271

Query: 945  RGPDLSAQLPVS---CSSVEHLHLEMYPTRNQVHVITLLLRSYPNLQTLRLSVEREQLNA 1115
             G + + ++P+S     S+E LH   +   N++ V+  L+ S PNL+ L++S     + A
Sbjct: 272  IG-NSARKMPISYIYLKSIE-LHQVSFEDMNEILVVLRLITSSPNLEELQISGSSNPVAA 329

Query: 1116 SMFDLEEHCEIQELRDDGILKELKIVEFEYFEGSESELNLVRYLLENANVLEDLNIIFSK 1295
            S     +  E  E   +    +L++V+     G   E+  ++YLL N  VLE ++I   +
Sbjct: 330  SEAPDLDFWE-NECPSNLTFGKLRVVKATDMSGVPHEMEFIKYLLRNCPVLEIMSI---R 385

Query: 1296 QDQIEATHRIDITEKMQTLTRASP 1367
                    R+++  ++    RASP
Sbjct: 386  PCVYVTDRRLNMLIELLKFRRASP 409


>ref|XP_003613781.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
           gi|355515116|gb|AES96739.1| F-box/FBD/LRR-repeat protein
           [Medicago truncatula]
          Length = 422

 Score = 65.5 bits (158), Expect(2) = 9e-19
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
 Frame = +2

Query: 77  SDMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQRHFFQLENRNLQ 256
           SD IS  P  ++ HI+S+L +++A RTS+LS +W+K  ST  +L F+++    + + +  
Sbjct: 6   SDRISCLPDHLQHHILSYLTIKEAGRTSVLSSKWKKKWSTQPDLVFDRQCVSTVASEDFS 65

Query: 257 ----DFKAFIYQTINLHVESDIELFKLYVDQAD---DEFVCHISEWVSFAFAHHVRQLQL 415
                F   I   + LH    I  F++   + D      +  +  W+       V++L L
Sbjct: 66  VIEGKFLRIIDHVLLLH-SGPINKFEVTDSECDLLGVNSMADVDRWILHLTGRSVKELVL 124

Query: 416 WVLDDECQKFPFCLFSSDSLTSLILVNINLKLPKNVK 526
            +   E  K P+CLFS  SL  L L +  LK P   K
Sbjct: 125 DIWAGELYKIPWCLFSYQSLHHLKLSHCLLKPPTMFK 161



 Score = 56.2 bits (134), Expect(2) = 9e-19
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 1/237 (0%)
 Frame = +3

Query: 576  DTADQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQI 755
            D  +   S CP LE  +    S++    F I APNLKF  +   +            + I
Sbjct: 179  DAFENLISGCPQLE--KLILTSVKGFTQFNIHAPNLKFFRINGKF------------EGI 224

Query: 756  IFNGTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTRKILLELRTVKELILGPFFIE 935
             F+ T   AV +Y    S   +    ++L      DH        L  +K L++    ++
Sbjct: 225  SFDNTLQLAV-VYLELSSYLNSESNHSNL--FNFFDH--------LPHIKSLLIVEHCLK 273

Query: 936  FLTRGPDLSAQLPVSCSSVEHLHLEM-YPTRNQVHVITLLLRSYPNLQTLRLSVEREQLN 1112
            +L  G  +  +LP     +  L LE+ +    ++ V+  LL+S PNLQ LR+    E+  
Sbjct: 274  YLAAGI-VPVELPTPIIDLSSLLLEINFNDLREISVVPCLLKSSPNLQRLRMIARLEE-Q 331

Query: 1113 ASMFDLEEHCEIQELRDDGILKELKIVEFEYFEGSESELNLVRYLLENANVLEDLNI 1283
              +     +C         +   +K V  +   G++SEL+ +R+LL+ + VL+ + +
Sbjct: 332  TDLVTPVSNCMEDIFSGPTMSLSVKYVVIKDISGTKSELDFIRFLLQYSPVLQKMTV 388


>ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|222865020|gb|EEF02151.1|
           predicted protein [Populus trichocarpa]
          Length = 420

 Score = 68.2 bits (165), Expect(2) = 3e-18
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
 Frame = +2

Query: 80  DMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQRHFFQLENRNLQD 259
           D+IS  PQ I + I++ LP+ DA+RTSILS +WR   +TL++L F+ +      +R + +
Sbjct: 8   DLISDLPQSILESILTRLPIRDAVRTSILSSKWRYRWTTLTHLVFDDKCIRMCSDRPVVE 67

Query: 260 --FKAFIYQTINLHVESDIELFKL---YVDQADDEFVCHISEWVSFAFAHHVRQLQLWVL 424
                FI + + LH +  I  F+L   Y+    D     I +W+ F     +++L L + 
Sbjct: 68  NCMVNFITRALFLH-QGPIHKFQLSTSYLQCCPD-----IDQWILFLSRSDIKELVLELG 121

Query: 425 DDECQKFPFCLFSSDSLTSLILVNINLKLPKNVK 526
           + E  + P CLF+   LT L L       P   K
Sbjct: 122 EGEWFRVPSCLFNCKKLTCLELFRCEFDPPPTFK 155



 Score = 51.6 bits (122), Expect(2) = 3e-18
 Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 6/242 (2%)
 Frame = +3

Query: 576  DTADQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQI 755
            +  +   S CP+LE+           NI    APNLK+L LE  ++             I
Sbjct: 173  EAIESLISGCPLLESLALSYFDSLALNI---RAPNLKYLCLEGEFT------------DI 217

Query: 756  IFNGTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTR----KILLELRTVKELILGP 923
                TP     L A S ++Y            E  + S++    K L  +  ++ L    
Sbjct: 218  CLENTPL----LVAMSVAMYMND------EMAECFEQSSKCNFIKFLGGVPRLERLAGHI 267

Query: 924  FFIEFLTRGPDLSAQLPVSCSSVEHLHLEM--YPTRNQVHVITLLLRSYPNLQTLRLSVE 1097
            +F ++L+ G D    L ++ S ++ + L    +    ++ V+  L+ + PNL+ LR+S  
Sbjct: 268  YFTKYLSIG-DYPGSLAITYSHLKIIELYQVSFEDMKEIRVVLRLIMNSPNLKELRISGS 326

Query: 1098 REQLNASMFDLEEHCEIQELRDDGILKELKIVEFEYFEGSESELNLVRYLLENANVLEDL 1277
               + AS+         +E   D   K+LK+V+     G   E+  +++LL N+ VLE +
Sbjct: 327  STAV-ASVEAPNLEFWAKECPKDCTFKQLKVVKMTDMSGVPHEMEFMKFLLANSPVLETM 385

Query: 1278 NI 1283
            +I
Sbjct: 386  SI 387