BLASTX nr result
ID: Coptis24_contig00011857
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00011857 (1828 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003589011.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 80 1e-22 ref|XP_004155285.1| PREDICTED: LOW QUALITY PROTEIN: F-box/FBD/LR... 67 6e-21 ref|XP_004135131.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g... 67 1e-20 ref|XP_003613781.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 65 9e-19 ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|2... 68 3e-18 >ref|XP_003589011.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355478059|gb|AES59262.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] Length = 528 Score = 80.1 bits (196), Expect(2) = 1e-22 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 15/169 (8%) Frame = +2 Query: 80 DMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQR-----------H 226 D IS+ P + D I+S+LP+ DA+RTS+LS+ WRK TL NL F+ + Sbjct: 15 DRISWLPGHVIDQIMSYLPIRDAVRTSVLSRNWRKKWYTLPNLVFDTKLVPVPAATSGDP 74 Query: 227 FFQLENRNLQDFKAFIYQTINLHVESDIELFKL-YVD--QADDEFVCHISEWVSFAFAHH 397 ++N+ LQ I + L I +FK VD +D V +I W+ Sbjct: 75 LAIIDNKFLQ-----IVDHVLLVHSGPINMFKFSNVDDLMGEDSLVTNIDRWILHLIGRS 129 Query: 398 VRQLQLWVLDDECQKFPFCLFSSDSLTSLILVNINLKLPKNVK-FPNLR 541 +++L L V D+ K P+CLFS SL SL L LK P + F NL+ Sbjct: 130 IKELVLEVWIDDYYKLPWCLFSCQSLHSLKLNGCLLKPPTMFEGFRNLK 178 Score = 54.7 bits (130), Expect(2) = 1e-22 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 2/236 (0%) Frame = +3 Query: 576 DTADQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQI 755 D + F S CP+LE R + I APNLKF + + ++ Sbjct: 190 DAFENFISRCPLLEKLRLR--EFYGLTQINIHAPNLKFFEIVGEF-------------EV 234 Query: 756 IFNGTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTRKILLELRTVKELILGPFFIE 935 + G + SC + + P + K ++ L + FF++ Sbjct: 235 VTFGNTFQLTTIVIYSCLELTSNSNQSRSPGCS---SNLLKFFDHRPHIQSLEIDGFFLK 291 Query: 936 FLTRGPDLSAQLPVSCSSVEHLHLEM-YPTRNQVHVITLLLRSYPNLQTLRLSVEREQLN 1112 +L G L +LP C ++ L L + + ++ + RS PNLQ L++S R + Sbjct: 292 YLAAGV-LPVKLPTPCINLSFLSLTINFDNMEEISAALCVFRSSPNLQKLKISALRAHVA 350 Query: 1113 ASMFDLEEHCEIQELRDDGILK-ELKIVEFEYFEGSESELNLVRYLLENANVLEDL 1277 +C +++ ++ ++ V + G++SELNL+R+LL + VLE + Sbjct: 351 TVPLTPATYCW-EDISSRLVMPFRVRHVTIDGISGTQSELNLIRFLLLYSLVLEKM 405 >ref|XP_004155285.1| PREDICTED: LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At1g13570-like [Cucumis sativus] Length = 418 Score = 67.4 bits (163), Expect(2) = 6e-21 Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Frame = +2 Query: 80 DMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQRHFFQLENRNLQD 259 D +S PQ I + I++ LP+ DAIRTSILS++WR +TL+ L F+ + +D Sbjct: 8 DHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIYED 67 Query: 260 FKAFIYQTINLHVESDIELFKL---YVDQADDEFVCHISEWVSFAFAHHVRQLQLWVLDD 430 FI + LH E I F L Y+ D + +W+ F +R+L + + D Sbjct: 68 LIYFITHVLXLH-EGPIHKFHLSATYLQNTPD-----LDQWLLFLSRKGIRELIIELGDG 121 Query: 431 ECQKFPFCLFSSDSLTSLILVNINLKLPKNVK 526 E + CLF+ LT L L L P K Sbjct: 122 EWFRVHSCLFNCSKLTLLELYRCELDPPPTFK 153 Score = 61.6 bits (148), Expect(2) = 6e-21 Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 3/264 (1%) Frame = +3 Query: 585 DQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQIIFN 764 + SNCP+LE+ S + I APNLK+L LE + + I Sbjct: 174 ESLISNCPLLESLAL---SYFDSLVLNICAPNLKYLYLEGEF------------RDICLQ 218 Query: 765 GTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTRKILLELRTVKELILGPFFIEFLT 944 TP L + S +LY S P ++ D + K L + +++L +F ++L+ Sbjct: 219 NTPL----LVSISVALY---MNDESEPFGDLSDCNYEKFLGGVPYLEKLTGHVYFTKYLS 271 Query: 945 RGPDLSAQLPVS---CSSVEHLHLEMYPTRNQVHVITLLLRSYPNLQTLRLSVEREQLNA 1115 G + + ++P+S S+E LH + N++ V+ L+ S PNL+ L++S + A Sbjct: 272 IG-NSARKMPISYIYLKSIE-LHQVSFEDMNEILVVLRLITSSPNLEELQISGSSNPVAA 329 Query: 1116 SMFDLEEHCEIQELRDDGILKELKIVEFEYFEGSESELNLVRYLLENANVLEDLNIIFSK 1295 S + E E + +L++V+ G E+ ++YLL N VLE ++I + Sbjct: 330 SEAPDLDFWE-NECPSNLTFGKLRVVKATDMSGVPHEMEFIKYLLRNCPVLEIMSI---R 385 Query: 1296 QDQIEATHRIDITEKMQTLTRASP 1367 R+++ ++ RASP Sbjct: 386 PCVYVTDRRLNMLIELLKFRRASP 409 >ref|XP_004135131.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Cucumis sativus] Length = 418 Score = 66.6 bits (161), Expect(2) = 1e-20 Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Frame = +2 Query: 80 DMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQRHFFQLENRNLQD 259 D +S PQ I + I++ LP+ DAIRTSILS++WR +TL+ L F+ + +D Sbjct: 8 DHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIYED 67 Query: 260 FKAFIYQTINLHVESDIELFKL---YVDQADDEFVCHISEWVSFAFAHHVRQLQLWVLDD 430 FI + LH E I F L Y+ D + +W+ F +R+L + + D Sbjct: 68 LIYFITHVLFLH-EGPIHKFHLSATYLQNTPD-----LDQWLLFLSRKGIRELIIELGDG 121 Query: 431 ECQKFPFCLFSSDSLTSLILVNINLKLPKNVK 526 E + CLF+ LT L L L P K Sbjct: 122 EWFRVHSCLFNCSKLTLLELYRCELDPPPTFK 153 Score = 61.6 bits (148), Expect(2) = 1e-20 Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 3/264 (1%) Frame = +3 Query: 585 DQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQIIFN 764 + SNCP+LE+ S + I APNLK+L LE + + I Sbjct: 174 ESLISNCPLLESLAL---SYFDSLVLNICAPNLKYLYLEGEF------------RDICLQ 218 Query: 765 GTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTRKILLELRTVKELILGPFFIEFLT 944 TP L + S +LY S P ++ D + K L + +++L +F ++L+ Sbjct: 219 NTPL----LVSISVALY---MNDESEPFGDLSDCNYEKFLGGVPYLEKLTGHVYFTKYLS 271 Query: 945 RGPDLSAQLPVS---CSSVEHLHLEMYPTRNQVHVITLLLRSYPNLQTLRLSVEREQLNA 1115 G + + ++P+S S+E LH + N++ V+ L+ S PNL+ L++S + A Sbjct: 272 IG-NSARKMPISYIYLKSIE-LHQVSFEDMNEILVVLRLITSSPNLEELQISGSSNPVAA 329 Query: 1116 SMFDLEEHCEIQELRDDGILKELKIVEFEYFEGSESELNLVRYLLENANVLEDLNIIFSK 1295 S + E E + +L++V+ G E+ ++YLL N VLE ++I + Sbjct: 330 SEAPDLDFWE-NECPSNLTFGKLRVVKATDMSGVPHEMEFIKYLLRNCPVLEIMSI---R 385 Query: 1296 QDQIEATHRIDITEKMQTLTRASP 1367 R+++ ++ RASP Sbjct: 386 PCVYVTDRRLNMLIELLKFRRASP 409 >ref|XP_003613781.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355515116|gb|AES96739.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] Length = 422 Score = 65.5 bits (158), Expect(2) = 9e-19 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Frame = +2 Query: 77 SDMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQRHFFQLENRNLQ 256 SD IS P ++ HI+S+L +++A RTS+LS +W+K ST +L F+++ + + + Sbjct: 6 SDRISCLPDHLQHHILSYLTIKEAGRTSVLSSKWKKKWSTQPDLVFDRQCVSTVASEDFS 65 Query: 257 ----DFKAFIYQTINLHVESDIELFKLYVDQAD---DEFVCHISEWVSFAFAHHVRQLQL 415 F I + LH I F++ + D + + W+ V++L L Sbjct: 66 VIEGKFLRIIDHVLLLH-SGPINKFEVTDSECDLLGVNSMADVDRWILHLTGRSVKELVL 124 Query: 416 WVLDDECQKFPFCLFSSDSLTSLILVNINLKLPKNVK 526 + E K P+CLFS SL L L + LK P K Sbjct: 125 DIWAGELYKIPWCLFSYQSLHHLKLSHCLLKPPTMFK 161 Score = 56.2 bits (134), Expect(2) = 9e-19 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 1/237 (0%) Frame = +3 Query: 576 DTADQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQI 755 D + S CP LE + S++ F I APNLKF + + + I Sbjct: 179 DAFENLISGCPQLE--KLILTSVKGFTQFNIHAPNLKFFRINGKF------------EGI 224 Query: 756 IFNGTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTRKILLELRTVKELILGPFFIE 935 F+ T AV +Y S + ++L DH L +K L++ ++ Sbjct: 225 SFDNTLQLAV-VYLELSSYLNSESNHSNL--FNFFDH--------LPHIKSLLIVEHCLK 273 Query: 936 FLTRGPDLSAQLPVSCSSVEHLHLEM-YPTRNQVHVITLLLRSYPNLQTLRLSVEREQLN 1112 +L G + +LP + L LE+ + ++ V+ LL+S PNLQ LR+ E+ Sbjct: 274 YLAAGI-VPVELPTPIIDLSSLLLEINFNDLREISVVPCLLKSSPNLQRLRMIARLEE-Q 331 Query: 1113 ASMFDLEEHCEIQELRDDGILKELKIVEFEYFEGSESELNLVRYLLENANVLEDLNI 1283 + +C + +K V + G++SEL+ +R+LL+ + VL+ + + Sbjct: 332 TDLVTPVSNCMEDIFSGPTMSLSVKYVVIKDISGTKSELDFIRFLLQYSPVLQKMTV 388 >ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|222865020|gb|EEF02151.1| predicted protein [Populus trichocarpa] Length = 420 Score = 68.2 bits (165), Expect(2) = 3e-18 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 5/154 (3%) Frame = +2 Query: 80 DMISYFPQEIRDHIVSFLPLEDAIRTSILSKQWRKVCSTLSNLDFNQRHFFQLENRNLQD 259 D+IS PQ I + I++ LP+ DA+RTSILS +WR +TL++L F+ + +R + + Sbjct: 8 DLISDLPQSILESILTRLPIRDAVRTSILSSKWRYRWTTLTHLVFDDKCIRMCSDRPVVE 67 Query: 260 --FKAFIYQTINLHVESDIELFKL---YVDQADDEFVCHISEWVSFAFAHHVRQLQLWVL 424 FI + + LH + I F+L Y+ D I +W+ F +++L L + Sbjct: 68 NCMVNFITRALFLH-QGPIHKFQLSTSYLQCCPD-----IDQWILFLSRSDIKELVLELG 121 Query: 425 DDECQKFPFCLFSSDSLTSLILVNINLKLPKNVK 526 + E + P CLF+ LT L L P K Sbjct: 122 EGEWFRVPSCLFNCKKLTCLELFRCEFDPPPTFK 155 Score = 51.6 bits (122), Expect(2) = 3e-18 Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 6/242 (2%) Frame = +3 Query: 576 DTADQFFSNCPVLETFRFQTCSMRHHNIFTISAPNLKFLMLEPMYSPSEIKITSTNLQQI 755 + + S CP+LE+ NI APNLK+L LE ++ I Sbjct: 173 EAIESLISGCPLLESLALSYFDSLALNI---RAPNLKYLCLEGEFT------------DI 217 Query: 756 IFNGTPPPAVNLYAASCSLYRATFRFASLPATEVIDHSTR----KILLELRTVKELILGP 923 TP L A S ++Y E + S++ K L + ++ L Sbjct: 218 CLENTPL----LVAMSVAMYMND------EMAECFEQSSKCNFIKFLGGVPRLERLAGHI 267 Query: 924 FFIEFLTRGPDLSAQLPVSCSSVEHLHLEM--YPTRNQVHVITLLLRSYPNLQTLRLSVE 1097 +F ++L+ G D L ++ S ++ + L + ++ V+ L+ + PNL+ LR+S Sbjct: 268 YFTKYLSIG-DYPGSLAITYSHLKIIELYQVSFEDMKEIRVVLRLIMNSPNLKELRISGS 326 Query: 1098 REQLNASMFDLEEHCEIQELRDDGILKELKIVEFEYFEGSESELNLVRYLLENANVLEDL 1277 + AS+ +E D K+LK+V+ G E+ +++LL N+ VLE + Sbjct: 327 STAV-ASVEAPNLEFWAKECPKDCTFKQLKVVKMTDMSGVPHEMEFMKFLLANSPVLETM 385 Query: 1278 NI 1283 +I Sbjct: 386 SI 387