BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011795
         (1540 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    65   5e-08
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi...    65   5e-08
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...    58   6e-06

>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score = 65.1 bits (157), Expect = 5e-08
 Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
 Frame = +2

Query: 146 VQPKCEHCECTINFLS*AGVFEEAKGV-Q*TPN*CSTSQQPKAWRGTLISFAGDYLETRL 322
           ++PK EH  C I+ LS  G FEEA+GV Q  P   S S++  AWR  L S    + +T+ 
Sbjct: 370 IEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFL-SACCKHGQTQQ 428

Query: 323 GRCCS*EGSFSQNLERHSGDYVLLSTMYADDVKYDDARKV 442
               + E  F   LERHSG YVLLS MYA   K++DA++V
Sbjct: 429 AEVAA-ERLFQ--LERHSGAYVLLSNMYAALGKHEDAKRV 465


>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score = 65.1 bits (157), Expect = 5e-08
 Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
 Frame = +2

Query: 146 VQPKCEHCECTINFLS*AGVFEEAKGV-Q*TPN*CSTSQQPKAWRGTLISFAGDYLETRL 322
           ++PK EH  C I+ LS  G FEEA+GV Q  P   S S++  AWR  L S    + +T+ 
Sbjct: 370 IEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFL-SACCKHGQTQQ 428

Query: 323 GRCCS*EGSFSQNLERHSGDYVLLSTMYADDVKYDDARKV 442
               + E  F   LERHSG YVLLS MYA   K++DA++V
Sbjct: 429 AEVAA-ERLFQ--LERHSGAYVLLSNMYAALGKHEDAKRV 465


>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score = 58.2 bits (139), Expect = 6e-06
 Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
 Frame = +2

Query: 128 LSKFCGVQ---PKCEHCECTINFLS*AGVFEEAKG-VQ*TPN*CSTSQQPKAWRGTLISF 295
           L K C V    PK EH  C ++ LS AG+FEEA   ++   N  + S++  AWR  L S 
Sbjct: 364 LDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFL-SA 422

Query: 296 AGDYLETRLGRCCS*EGSFSQNLERHSGDYVLLSTMYADDVKYDDARKV 442
             ++ ET+L    + E     +   HSG YVLLS +YA   K+ DAR+V
Sbjct: 423 CCNHGETQLAELAA-EKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRV 470