BLASTX nr result
ID: Coptis24_contig00011795
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00011795 (1540 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 65 5e-08 ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi... 65 5e-08 ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t... 58 6e-06 >ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g20540-like [Cucumis sativus] Length = 532 Score = 65.1 bits (157), Expect = 5e-08 Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 1/100 (1%) Frame = +2 Query: 146 VQPKCEHCECTINFLS*AGVFEEAKGV-Q*TPN*CSTSQQPKAWRGTLISFAGDYLETRL 322 ++PK EH C I+ LS G FEEA+GV Q P S S++ AWR L S + +T+ Sbjct: 370 IEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFL-SACCKHGQTQQ 428 Query: 323 GRCCS*EGSFSQNLERHSGDYVLLSTMYADDVKYDDARKV 442 + E F LERHSG YVLLS MYA K++DA++V Sbjct: 429 AEVAA-ERLFQ--LERHSGAYVLLSNMYAALGKHEDAKRV 465 >ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Cucumis sativus] Length = 532 Score = 65.1 bits (157), Expect = 5e-08 Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 1/100 (1%) Frame = +2 Query: 146 VQPKCEHCECTINFLS*AGVFEEAKGV-Q*TPN*CSTSQQPKAWRGTLISFAGDYLETRL 322 ++PK EH C I+ LS G FEEA+GV Q P S S++ AWR L S + +T+ Sbjct: 370 IEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFL-SACCKHGQTQQ 428 Query: 323 GRCCS*EGSFSQNLERHSGDYVLLSTMYADDVKYDDARKV 442 + E F LERHSG YVLLS MYA K++DA++V Sbjct: 429 AEVAA-ERLFQ--LERHSGAYVLLSNMYAALGKHEDAKRV 465 >ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula] Length = 525 Score = 58.2 bits (139), Expect = 6e-06 Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Frame = +2 Query: 128 LSKFCGVQ---PKCEHCECTINFLS*AGVFEEAKG-VQ*TPN*CSTSQQPKAWRGTLISF 295 L K C V PK EH C ++ LS AG+FEEA ++ N + S++ AWR L S Sbjct: 364 LDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFL-SA 422 Query: 296 AGDYLETRLGRCCS*EGSFSQNLERHSGDYVLLSTMYADDVKYDDARKV 442 ++ ET+L + E + HSG YVLLS +YA K+ DAR+V Sbjct: 423 CCNHGETQLAELAA-EKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRV 470