BLASTX nr result
ID: Coptis24_contig00011769
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011769
(1829 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 194 7e-47
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 191 4e-46
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 182 3e-43
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin... 181 8e-43
emb|CAN74180.1| hypothetical protein VITISV_034258 [Vitis vinifera] 177 8e-42
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 194 bits (493), Expect = 7e-47
Identities = 133/402 (33%), Positives = 203/402 (50%), Gaps = 35/402 (8%)
Frame = +1
Query: 634 NWLDLPDHLTSLVAEKLVGNVRDLIVFSAVCTSWHSVYIQNLKFRDRLPRQLPYVMLPTE 813
+W L L +A+K D + F AVC +W + K LP QLP++MLP
Sbjct: 3 DWSQLHPELLDFIAKKFK-IYTDYVRFRAVCHNWRASVP---KTPHHLPTQLPWLMLPQS 58
Query: 814 FDRDDQTRSCYSISSNKLCGFH-LRVPQD---RICHGSSYGWLVTVHDNLDVSLLNPFLS 981
R +S+S NK FH L++P+ R GSS+GWL+ + + ++ LLNP
Sbjct: 59 QPHHTH-RPFFSLSLNK---FHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPL-- 112
Query: 982 VNNEIHLPPLSTFQ----------------RTGNDPLHNH--------YMIKAVLSANPS 1089
+++HLPPLSTF RT + ++ ++ K +LS++P+
Sbjct: 113 TRSKVHLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPA 172
Query: 1090 LNPNYVVAAIHGDRKVLAFWRPGDTAWTSLDIKYEAFRDLVYYRDQFYVVDNVGVIFAFD 1269
+++ I LA R D +WT L+ D++++R FY V+ G I D
Sbjct: 173 NGSDFIAVVILNQTGDLALCRKSDDSWTFLEDAQSYSEDVIFHRGLFYAVNKYGSIAVCD 232
Query: 1270 ANHPHPKLSVVS-PGALVEESRYIVESSGDLLQVLR------DVQVTEDDLAYFTRGFQV 1428
+ P++S++ P + +Y+VES +LL V R DV+ + L Y T FQV
Sbjct: 233 VSGSSPRVSIIEMPQQFGGDLQYLVESGEELLLVTRYLDLTYDVEXDQTSLIYRTTRFQV 292
Query: 1429 FKLLDSTRDEWVEVKSLDGRVLFLGDNTSMSLLASDFPGCKPDCIYFTDDYHEGYFERVY 1608
+L DS W V SL R LFLG+N S+SL + DFPGCK +CIY+TDDY E ++ +
Sbjct: 293 CRL-DSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIG 351
Query: 1609 LKESDGCWPHEMGVFNINDGSIEPFHPVESDMILPPPIWIEP 1734
++ ++G+FN+ DGSIEP + PPP+W+ P
Sbjct: 352 GEQ-------DLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTP 386
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 191 bits (486), Expect = 4e-46
Identities = 132/402 (32%), Positives = 202/402 (50%), Gaps = 35/402 (8%)
Frame = +1
Query: 634 NWLDLPDHLTSLVAEKLVGNVRDLIVFSAVCTSWHSVYIQNLKFRDRLPRQLPYVMLPTE 813
+W L L +A+K D + F AVC +W + K LP QLP++MLP
Sbjct: 3 DWSQLHPELLDFIAKKFK-IYTDYVRFRAVCHNWRASVP---KTPHHLPTQLPWLMLPQS 58
Query: 814 FDRDDQTRSCYSISSNKLCGFH-LRVPQD---RICHGSSYGWLVTVHDNLDVSLLNPFLS 981
R +S+S NK FH L++P+ R GSS+GWL+ + + ++ LLNP
Sbjct: 59 QPHHTH-RPFFSLSLNK---FHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPL-- 112
Query: 982 VNNEIHLPPLSTFQ----------------RTGNDPLHNH--------YMIKAVLSANPS 1089
+++HLPPLSTF RT + ++ ++ K +LS++P+
Sbjct: 113 TRSKVHLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPA 172
Query: 1090 LNPNYVVAAIHGDRKVLAFWRPGDTAWTSLDIKYEAFRDLVYYRDQFYVVDNVGVIFAFD 1269
+++ I LA R D +WT L+ D++++R FY V+ G I D
Sbjct: 173 NGSDFIAVVILNQTGDLALCRKSDDSWTFLEDAQSYAEDVIFHRGLFYAVNKYGSIAVCD 232
Query: 1270 ANHPHPKLSVVS-PGALVEESRYIVESSGDLLQVLR------DVQVTEDDLAYFTRGFQV 1428
+ P++S++ P + +Y+VES +LL V R DV+ + L Y T FQV
Sbjct: 233 VSGSSPRVSIIEMPQQFGGDLQYLVESGEELLLVTRYLDLTYDVEPDQTSLIYRTTRFQV 292
Query: 1429 FKLLDSTRDEWVEVKSLDGRVLFLGDNTSMSLLASDFPGCKPDCIYFTDDYHEGYFERVY 1608
+L D W V SL R LFLG+N S+SL + DFPGCK +CIY+TDDY E ++ +
Sbjct: 293 CRL-DLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIG 351
Query: 1609 LKESDGCWPHEMGVFNINDGSIEPFHPVESDMILPPPIWIEP 1734
++ ++G+FN+ DGSIEP + PPP+W+ P
Sbjct: 352 GEQ-------DLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTP 386
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 182 bits (461), Expect = 3e-43
Identities = 128/402 (31%), Positives = 199/402 (49%), Gaps = 34/402 (8%)
Frame = +1
Query: 631 VNWLDLPDHLTSLVAEKLVGNVRDLIVFSAVCTSWHSVYIQNLKFRDRLPRQLPYVMLPT 810
V+W LP L ++++K+ D + F AVC +W S K + LP QLP+++LP
Sbjct: 3 VDWTQLPPELIEIISKKIT-IYSDYLHFQAVCHAWKSSIP---KTPNHLPPQLPWLLLPQ 58
Query: 811 EFDRDDQTRSCYSISSNKLCGFHLRVPQDRICH-GSSYGWLVTVHDNLDVSLLNPFLSVN 987
R+ +++S+ K +L R H GSS+GWL+ + D+ + ++NP
Sbjct: 59 SQSNQSSYRAFFNLSTYKFHSLNLPEASHRKKHCGSSHGWLIILDDSPSILVINPL--TR 116
Query: 988 NEIHLPPLSTFQRT--------GNDPL----------------HNHYMIKAVLSANPSLN 1095
+IHLP +S+F G + L + ++ K V+S++P
Sbjct: 117 RKIHLPAISSFPNVVSFDYANVGREYLLVNPQGERNTASLRQMRDGFIKKVVMSSSPLEK 176
Query: 1096 PN--YVVAAIHGDRKVLAFWRPGDTAWTSLDIKYEAFRDLVYYRDQFYVVDNVGVIFAFD 1269
+V AI LA+ + GD W ++ D++Y+ FY V+ G I D
Sbjct: 177 KGDFFVAMAILCSTGDLAYCKNGDECWNIVENSRSFSEDVIYFNGLFYAVNKAGQIVVCD 236
Query: 1270 ANHPHPKLSVV-SPGALVEESRYIVESSGDLLQVLR--DVQVTEDDLAYFTRGFQVFKLL 1440
N PK+S + +P + + +Y+V S LL V R D+ V D Y T F+VFKL
Sbjct: 237 VNGNSPKVSFIETPRQIGGDMQYLVSSGDGLLLVTRYLDLDVEFDIFIYKTARFEVFKL- 295
Query: 1441 DSTRDEWVEVKSLDGRVLFLGDNTSMSLLASDFPGCKPDCIYFTDDYHEGYFERVYLKES 1620
D W V SL +LF+G+N+S++L AS GC DCIY+TDDY ++ ++ E
Sbjct: 296 DLNGPRWERVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDDYSANNYDG-HIGE- 353
Query: 1621 DGCWPHEMGVFNINDGSIEPF--HPVESDMIL--PPPIWIEP 1734
H++G+F ++DGSIEP +P S L PPP+WI P
Sbjct: 354 -----HDLGIFKLSDGSIEPLPCYPRNSYSRLQWPPPLWISP 390
>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
Length = 393
Score = 181 bits (458), Expect = 8e-43
Identities = 144/417 (34%), Positives = 198/417 (47%), Gaps = 47/417 (11%)
Frame = +1
Query: 625 INVNWLDLPDHLTSLVAEKLVGNVRDLIVFSAVCTSWHSVYIQNLKFRDRLPRQLPYVML 804
+ V W +LP L +++ L V D + F +VC SW S K LP QLP++ML
Sbjct: 1 MGVEWGELPPELLESISKTLTIYV-DYLRFRSVCRSWRSSVP---KIPLHLPPQLPWLML 56
Query: 805 PTEFDRDDQTRSCYSISSNKLCGFHLRVPQD----RICHGSSYGWLVTVHDNLDVSLLNP 972
R+ + +S NK HL PQ RIC GSS+GWLV + + + LLNP
Sbjct: 57 --------SRRAFFDLSLNKT---HLLNPQPSHRTRIC-GSSHGWLVMLDETPQIRLLNP 104
Query: 973 FLSVNNEIHLPPLSTF--------QRTGND----------------PLHNHYMIKAVLSA 1080
LPPL F G + + N ++ K VLSA
Sbjct: 105 LTRATRP--LPPLHAFPNVVAFDHANVGREYLIQNPYGGLYAFNLRQMCNSFLGKVVLSA 162
Query: 1081 NPSLNPNYVVAAIHGDRKVLAFWRPGDTAWTSLDIKYE---AFRDLVYYRDQFYVVDNVG 1251
+P+LN ++ AI G LAF R G +W L+ + E + D+V Y F+ V G
Sbjct: 163 SPTLNDDFAALAIVGQNN-LAFCRNGYDSWIFLNGEEEEMNCWEDVVNYNGLFFAVSKGG 221
Query: 1252 VIFAFDANHP--HPKLSVV---SPGALVEESRYIVESSGDLLQVLR-------DVQVTED 1395
I DA P++S++ +P + Y V S+GD+L ++R D E
Sbjct: 222 TIAVCDAGEGCFPPRVSIIQTTTPFGFAGDIHYAVFSAGDMLLLIRVLDQDFSDHAGEES 281
Query: 1396 DLAYFTRGFQVFKLLDSTRDEWVEVKSLDGRVLFLGDNTSMSLLASDFPGCKPDCIYFTD 1575
DL Y T GF+VFK ++ W V++L RVLF+G N+S+S ASDF GC DCIYFTD
Sbjct: 282 DLVYRTVGFEVFK-MNWGLLTWQRVETLGERVLFVGGNSSLSFCASDFVGCSADCIYFTD 340
Query: 1576 DYHEGYFERVYLKESDGCWPHEMGVFNINDGSIEPFHPVE----SDMILPPPIWIEP 1734
DY E + D C H++GVF + D SIEP S + P PIW+ P
Sbjct: 341 DYSES-------NDDDACGKHDLGVFRLRDKSIEPLPCFNQNSCSRLRWPLPIWVSP 390
>emb|CAN74180.1| hypothetical protein VITISV_034258 [Vitis vinifera]
Length = 394
Score = 177 bits (449), Expect = 8e-42
Identities = 133/402 (33%), Positives = 195/402 (48%), Gaps = 33/402 (8%)
Frame = +1
Query: 634 NWLDLPDHLTSLVAEKLVGNVRDLIVFSAVCTSWHSVYIQNLKFRDRLPRQL-PYVMLPT 810
+W LP L L+ ++L + D+I F VC W V ++ + + R L P ++LP
Sbjct: 5 DWSKLPKELIELIFDELQ-HAGDIIRFGTVCRFWGLVALEARQQVFKPLRPLSPMLLLPP 63
Query: 811 EFDRDDQTRSCYSISSNKLCGFHLRVPQDRICHGSSYGWLVTVHDNL--DVSLLNPFLSV 984
++DD Y K + +D+ C S GWL+T++ ++ LNP V
Sbjct: 64 --NKDDGAHKLYDFFKKKAYKIQIPAMRDKWCCNSWNGWLITINHTFPYEICCLNPISGV 121
Query: 985 NNEIHLPPLSTFQRTGND----PLHNHYMIKAVLSANPS-LNPNYVVAAIHGDRKVLAFW 1149
+I LPP TF+ + D P+ ++ K VLS+ PS N N V+ AIH + LAF
Sbjct: 122 --QIDLPPAITFEDSPPDLDETPIE-FFLNKVVLSSTPSPSNANCVIMAIHSNYNKLAFC 178
Query: 1150 RPGDTAWTSLDIKYEAFRDLVYYRDQFYVVDNVGVIFAFDANHPHPKLSVVSPGALVEES 1329
+PGD W +L + ++DL+YY+D FY + V+ + P + P +
Sbjct: 179 KPGDKRWITLKSEDIQYKDLLYYKDNFYAIGRSKVVQCDIGDDPRVIPFALLPKMGYFQY 238
Query: 1330 RYIVESSGDLLQVLR--DVQVTEDDLA--YFTRGFQVFKL-------------------- 1437
RY+VESSG LL VLR D++ ED L Y T GF+VF L
Sbjct: 239 RYLVESSGCLLYVLRYMDLKDNEDPLKLRYETTGFKVFDLDSDKRKFSYRYETTTFKVYN 298
Query: 1438 LDSTRDEWVEVKSLDGRVLFLGDNTSMSLLASDFPGCKPDCIYFTDDYHEGYFERVYLKE 1617
D + +W +K++ + L LG N ++S+ F G K + IYF DDY EGYFE Y
Sbjct: 299 FDFDQKKWKLIKNIKEKALLLGHNQAISISTKKFDGFKSNHIYFLDDYKEGYFENTY--- 355
Query: 1618 SDGCWPHEMGVFNINDGSIEP-FHPVESDMILPPPIWIEPAL 1740
GC H+MGVFNI +P FH + + P W+ P L
Sbjct: 356 --GC--HDMGVFNIKTHLFKPIFH--RTQLWASPLFWMRPEL 391