BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011722
         (829 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525033.1| conserved hypothetical protein [Ricinus comm...   154   2e-35
ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II su...   145   1e-32
ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213...   145   1e-32
ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246...   143   4e-32
ref|XP_002329936.1| predicted protein [Populus trichocarpa] gi|2...   143   5e-32

>ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
           gi|223535695|gb|EEF37360.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 203

 Score =  154 bits (390), Expect = 2e-35
 Identities = 79/150 (52%), Positives = 105/150 (70%), Gaps = 2/150 (1%)
 Frame = -1

Query: 703 KGGKPKPIND--KAGTPNPPKIPIFDIENDLPKNTKCLMDCEAEAILSKIQEQMVILSDD 530
           KGGK   +++  K  +   P+     IE DLPKN KCLMDCEA  +L  IQEQMV+LS D
Sbjct: 53  KGGKGDKVSNGVKISSTKEPQPLELKIEQDLPKNAKCLMDCEAAQVLQGIQEQMVLLSRD 112

Query: 529 PMIKLPVSFHKGLQYAKSGCGYSNVESARRVLETLKANNKVSESEICLIGNICPDGVDEL 350
           P IKLPVSF + LQ+A++G  ++N +S RR+LE LK +  VSE EIC I N+CPDGVDE+
Sbjct: 113 PTIKLPVSFDRALQHARTGARFTNPQSVRRILEGLKKHG-VSEGEICTIANVCPDGVDEV 171

Query: 349 FALMPSLKGNKGKNERAVKDVVGLLAKMKE 260
           FAL+PSLK  K      +KD++G L+++K+
Sbjct: 172 FALVPSLKSKKNVLREPLKDILGQLSELKQ 201


>ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
           [Cucumis sativus]
          Length = 220

 Score =  145 bits (366), Expect = 1e-32
 Identities = 81/152 (53%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
 Frame = -1

Query: 712 DYGKGGKPKPINDKAGTPNPPKIPIFDIENDLPKNTKC--LMDCEAEAILSKIQEQMVIL 539
           D GKGGK    N KA     P+     IE +LPKN KC  LMDCEA  +L  IQ+QMV L
Sbjct: 70  DLGKGGKGA--NTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFL 127

Query: 538 SDDPMIKLPVSFHKGLQYAKSGCGYSNVESARRVLETLKANNKVSESEICLIGNICPDGV 359
           S DP IK+P SF +GLQYAK    Y N ES R VLETLK    V++SEIC+I N+CPD  
Sbjct: 128 SADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYG-VTDSEICVIANVCPDTT 186

Query: 358 DELFALMPSLKGNKGKNERAVKDVVGLLAKMK 263
           DE+FAL+PSLK  + K    + +V+  LAK+K
Sbjct: 187 DEVFALLPSLKRKRSKLSEPINNVLSELAKVK 218


>ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
          Length = 242

 Score =  145 bits (366), Expect = 1e-32
 Identities = 81/152 (53%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
 Frame = -1

Query: 712 DYGKGGKPKPINDKAGTPNPPKIPIFDIENDLPKNTKC--LMDCEAEAILSKIQEQMVIL 539
           D GKGGK    N KA     P+     IE +LPKN KC  LMDCEA  +L  IQ+QMV L
Sbjct: 70  DLGKGGKGA--NTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFL 127

Query: 538 SDDPMIKLPVSFHKGLQYAKSGCGYSNVESARRVLETLKANNKVSESEICLIGNICPDGV 359
           S DP IK+P SF +GLQYAK    Y N ES R VLETLK    V++SEIC+I N+CPD  
Sbjct: 128 SADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYG-VTDSEICVIANVCPDTT 186

Query: 358 DELFALMPSLKGNKGKNERAVKDVVGLLAKMK 263
           DE+FAL+PSLK  + K    + +V+  LAK+K
Sbjct: 187 DEVFALLPSLKRKRSKLSEPINNVLSELAKVK 218


>ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
           vinifera] gi|359495604|ref|XP_003635035.1| PREDICTED:
           uncharacterized protein LOC100246461 isoform 2 [Vitis
           vinifera] gi|297736694|emb|CBI25730.3| unnamed protein
           product [Vitis vinifera]
          Length = 239

 Score =  143 bits (361), Expect = 4e-32
 Identities = 77/152 (50%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
 Frame = -1

Query: 712 DYGKGGKPKPI--NDKAGTPNPPKIPIFDIENDLPKNTKCLMDCEAEAILSKIQEQMVIL 539
           D  KGGK   +   +K+  P PP      IE +LPKN KC+MDCEA  IL  IQEQMV+L
Sbjct: 74  DLSKGGKGGRVLNGEKSAVPKPPAPLELRIEQELPKNAKCMMDCEAALILKGIQEQMVVL 133

Query: 538 SDDPMIKLPVSFHKGLQYAKSGCGYSNVESARRVLETLKANNKVSESEICLIGNICPDGV 359
           S+DP IK+P+SF+KGLQYA+S   Y++ +S R VLE L +   VS+ EIC+I N CP+ +
Sbjct: 134 SEDPTIKIPLSFNKGLQYAQSSNCYASPQSVRLVLEPL-SKYGVSDGEICVIANTCPETI 192

Query: 358 DELFALMPSLKGNKGKNERAVKDVVGLLAKMK 263
           DE+FAL+PSLK         +KDV+  LA++K
Sbjct: 193 DEVFALVPSLKPKWSTLREPLKDVLRGLAELK 224


>ref|XP_002329936.1| predicted protein [Populus trichocarpa] gi|222871958|gb|EEF09089.1|
           predicted protein [Populus trichocarpa]
          Length = 197

 Score =  143 bits (360), Expect = 5e-32
 Identities = 79/149 (53%), Positives = 98/149 (65%)
 Frame = -1

Query: 706 GKGGKPKPINDKAGTPNPPKIPIFDIENDLPKNTKCLMDCEAEAILSKIQEQMVILSDDP 527
           GKGGK         T  PP + +  IE++LP+N K LMDCEA  IL  IQ+QMV+LS DP
Sbjct: 49  GKGGKIANGGKSPMTKEPPPLEL-KIESELPQNAKPLMDCEAAQILQGIQDQMVLLSQDP 107

Query: 526 MIKLPVSFHKGLQYAKSGCGYSNVESARRVLETLKANNKVSESEICLIGNICPDGVDELF 347
            IKLPVSF KGLQYAK+G  Y+N +S RRVLE L+    VS+ EI LI N+ P+  DE F
Sbjct: 108 TIKLPVSFDKGLQYAKNGAHYTNPQSVRRVLEALRKYG-VSDGEISLIANVFPETADEAF 166

Query: 346 ALMPSLKGNKGKNERAVKDVVGLLAKMKE 260
           AL+PSLK         +KD++G LAK K+
Sbjct: 167 ALVPSLKSKASTLREPLKDILGELAKFKQ 195