BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011707
         (249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16259.3| unnamed protein product [Vitis vinifera]               84   9e-15
ref|XP_002284873.1| PREDICTED: tRNA-splicing endonuclease subuni...    84   9e-15
ref|XP_002526336.1| tRNA-splicing endonuclease subunit Sen2-2, p...    82   4e-14
ref|XP_002313727.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
gb|ABK93461.1| unknown [Populus trichocarpa]                           79   5e-13

>emb|CBI16259.3| unnamed protein product [Vitis vinifera]
          Length = 232

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 42/81 (51%), Positives = 56/81 (69%)
 Frame = -2

Query: 245 RWKGKGGLKAIAPANPMSNIVAXXXXXXXXSKACGLLADFAVLLQVGIEQADLLNRACFG 66
           RWKGKG  +A A A PMS IV+        S + GLL+  +VLL+ G EQ +LLNR+CFG
Sbjct: 4   RWKGKGA-EAKALAEPMSEIVSQLQSSLTRSDSQGLLSGCSVLLEAGAEQTELLNRSCFG 62

Query: 65  HPIVTTNEDNQWYELSLEEAF 3
            P++T  +D QW++LS+EEAF
Sbjct: 63  RPVITAEKDKQWFQLSMEEAF 83


>ref|XP_002284873.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 [Vitis
           vinifera]
          Length = 242

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 42/81 (51%), Positives = 56/81 (69%)
 Frame = -2

Query: 245 RWKGKGGLKAIAPANPMSNIVAXXXXXXXXSKACGLLADFAVLLQVGIEQADLLNRACFG 66
           RWKGKG  +A A A PMS IV+        S + GLL+  +VLL+ G EQ +LLNR+CFG
Sbjct: 4   RWKGKGA-EAKALAEPMSEIVSQLQSSLTRSDSQGLLSGCSVLLEAGAEQTELLNRSCFG 62

Query: 65  HPIVTTNEDNQWYELSLEEAF 3
            P++T  +D QW++LS+EEAF
Sbjct: 63  RPVITAEKDKQWFQLSMEEAF 83


>ref|XP_002526336.1| tRNA-splicing endonuclease subunit Sen2-2, putative [Ricinus
           communis] gi|223534295|gb|EEF36007.1| tRNA-splicing
           endonuclease subunit Sen2-2, putative [Ricinus communis]
          Length = 237

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 41/82 (50%), Positives = 55/82 (67%)
 Frame = -2

Query: 248 TRWKGKGGLKAIAPANPMSNIVAXXXXXXXXSKACGLLADFAVLLQVGIEQADLLNRACF 69
           TRWKGKG  +A A A+PMS I++          A GLL+  +VLL V  EQ +LL RACF
Sbjct: 3   TRWKGKGS-EAKAAADPMSKIISQLCSSLIQFDAHGLLSGCSVLLAVESEQTELLTRACF 61

Query: 68  GHPIVTTNEDNQWYELSLEEAF 3
           G P++T+ +D QW++L +EEAF
Sbjct: 62  GRPMITSEKDKQWFQLGIEEAF 83


>ref|XP_002313727.1| predicted protein [Populus trichocarpa] gi|222850135|gb|EEE87682.1|
           predicted protein [Populus trichocarpa]
          Length = 235

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 42/81 (51%), Positives = 53/81 (65%)
 Frame = -2

Query: 245 RWKGKGGLKAIAPANPMSNIVAXXXXXXXXSKACGLLADFAVLLQVGIEQADLLNRACFG 66
           RWKGKG  +A A A+PMS IV+        S AC  L+  +VLL V  EQ +LL RACFG
Sbjct: 4   RWKGKGA-EAKALADPMSEIVSQLQSSLLQSNACASLSGCSVLLAVETEQTELLTRACFG 62

Query: 65  HPIVTTNEDNQWYELSLEEAF 3
            PI+T  ++ QW++L LEEAF
Sbjct: 63  KPIITAEKEKQWFQLGLEEAF 83


>gb|ABK93461.1| unknown [Populus trichocarpa]
          Length = 235

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 41/81 (50%), Positives = 53/81 (65%)
 Frame = -2

Query: 245 RWKGKGGLKAIAPANPMSNIVAXXXXXXXXSKACGLLADFAVLLQVGIEQADLLNRACFG 66
           RWKGKG  +A A A+PMS IV+        S AC  L+  +VLL V  E+ +LL RACFG
Sbjct: 4   RWKGKGA-EAKALADPMSEIVSQLQSSLLQSNACASLSGCSVLLAVETEKTELLTRACFG 62

Query: 65  HPIVTTNEDNQWYELSLEEAF 3
            PI+T  ++ QW++L LEEAF
Sbjct: 63  KPIITAEKEKQWFQLGLEEAF 83