BLASTX nr result

ID: Coptis24_contig00011662 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011662
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279210.1| PREDICTED: CBS domain-containing protein CBS...   115   3e-24
ref|XP_003534522.1| PREDICTED: CBS domain-containing protein CBS...   104   9e-21
ref|XP_002512622.1| conserved hypothetical protein [Ricinus comm...   103   1e-20
ref|XP_003624141.1| hypothetical protein MTR_7g079680 [Medicago ...   101   6e-20
gb|AFK42288.1| unknown [Medicago truncatula]                          101   6e-20

>ref|XP_002279210.1| PREDICTED: CBS domain-containing protein CBSX6 [Vitis vinifera]
           gi|297735292|emb|CBI17654.3| unnamed protein product
           [Vitis vinifera]
          Length = 427

 Score =  115 bits (289), Expect = 3e-24
 Identities = 61/74 (82%), Positives = 64/74 (86%), Gaps = 2/74 (2%)
 Frame = +3

Query: 138 GGA--RLRKFSSRSIVFFSSLTSPTFGMGRSMYRGRSAPLTCKVTSSLAAVMAQMLSHRA 311
           GGA  R RKFSSRSI FFS+  SP+FG  RSMYRGRSAPLTCKVTSSLAAVMAQMLSHRA
Sbjct: 317 GGASTRQRKFSSRSIGFFSNPASPSFGASRSMYRGRSAPLTCKVTSSLAAVMAQMLSHRA 376

Query: 312 THVWVTEAEDEESL 353
           THVWVTEAE E+ L
Sbjct: 377 THVWVTEAESEDIL 390


>ref|XP_003534522.1| PREDICTED: CBS domain-containing protein CBSX6-like [Glycine max]
          Length = 425

 Score =  104 bits (259), Expect = 9e-21
 Identities = 53/72 (73%), Positives = 61/72 (84%)
 Frame = +3

Query: 138 GGARLRKFSSRSIVFFSSLTSPTFGMGRSMYRGRSAPLTCKVTSSLAAVMAQMLSHRATH 317
           G  + RKFSSRS+ FFS+  S +FG  RSMYRGRSAPLTCK+TSSLAAV+AQMLSHRATH
Sbjct: 319 GSRKPRKFSSRSVGFFSNTASHSFG-SRSMYRGRSAPLTCKITSSLAAVLAQMLSHRATH 377

Query: 318 VWVTEAEDEESL 353
           VWVTE E++E L
Sbjct: 378 VWVTEDENDEVL 389


>ref|XP_002512622.1| conserved hypothetical protein [Ricinus communis]
           gi|223548583|gb|EEF50074.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 432

 Score =  103 bits (257), Expect(2) = 1e-20
 Identities = 53/72 (73%), Positives = 61/72 (84%)
 Frame = +3

Query: 138 GGARLRKFSSRSIVFFSSLTSPTFGMGRSMYRGRSAPLTCKVTSSLAAVMAQMLSHRATH 317
           G  R +KFSS+SI F     S +FG+GRSMYRGRSAPLTCK+TSSLAAVMAQMLSHRATH
Sbjct: 327 GSTRPKKFSSKSIGFNPG--SSSFGIGRSMYRGRSAPLTCKITSSLAAVMAQMLSHRATH 384

Query: 318 VWVTEAEDEESL 353
           VWVTEA+++E L
Sbjct: 385 VWVTEADNDEVL 396



 Score = 20.8 bits (42), Expect(2) = 1e-20
 Identities = 9/14 (64%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
 Frame = +1

Query: 91  SLPDFSINS-LEDN 129
           SLPDF++NS + DN
Sbjct: 307 SLPDFTVNSTVSDN 320


>ref|XP_003624141.1| hypothetical protein MTR_7g079680 [Medicago truncatula]
           gi|355499156|gb|AES80359.1| hypothetical protein
           MTR_7g079680 [Medicago truncatula]
          Length = 437

 Score =  101 bits (252), Expect = 6e-20
 Identities = 52/72 (72%), Positives = 61/72 (84%)
 Frame = +3

Query: 138 GGARLRKFSSRSIVFFSSLTSPTFGMGRSMYRGRSAPLTCKVTSSLAAVMAQMLSHRATH 317
           G  +L+KFSSRSI FFS+  S +FG  RSM+RGRS PLTCK+TSSLAAVMAQMLSHRATH
Sbjct: 331 GSRKLKKFSSRSIGFFSNSPSNSFG-SRSMFRGRSTPLTCKMTSSLAAVMAQMLSHRATH 389

Query: 318 VWVTEAEDEESL 353
           VWVTE E+++ L
Sbjct: 390 VWVTEDENDDVL 401


>gb|AFK42288.1| unknown [Medicago truncatula]
          Length = 422

 Score =  101 bits (252), Expect = 6e-20
 Identities = 52/72 (72%), Positives = 61/72 (84%)
 Frame = +3

Query: 138 GGARLRKFSSRSIVFFSSLTSPTFGMGRSMYRGRSAPLTCKVTSSLAAVMAQMLSHRATH 317
           G  +L+KFSSRSI FFS+  S +FG  RSM+RGRS PLTCK+TSSLAAVMAQMLSHRATH
Sbjct: 316 GSRKLKKFSSRSIGFFSNSPSNSFG-SRSMFRGRSTPLTCKMTSSLAAVMAQMLSHRATH 374

Query: 318 VWVTEAEDEESL 353
           VWVTE E+++ L
Sbjct: 375 VWVTEDENDDVL 386


Top