BLASTX nr result
ID: Coptis24_contig00011637
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00011637 (476 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat... 193 1e-47 ref|XP_003628710.1| Pentatricopeptide repeat-containing protein ... 192 2e-47 ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat... 189 2e-46 ref|XP_002514567.1| pentatricopeptide repeat-containing protein,... 189 2e-46 ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|2... 182 2e-44 >ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus] gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus] Length = 743 Score = 193 bits (490), Expect = 1e-47 Identities = 92/158 (58%), Positives = 120/158 (75%) Frame = -3 Query: 474 EMQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXX 295 +MQ +FD M D VSWN+++SGYA + ESVR Y +ML+DGS NLNRITFSTM Sbjct: 89 DMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILS 148 Query: 294 XXXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYN 115 LG+QIHGQI K G+Q+Y+FVGSPLVDMY+K+G + +A R FEE+ E+N+V+YN Sbjct: 149 SNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYN 208 Query: 114 TMISGLLRCGMVEDSKHLFNEMPEKDSISWTAMVTGLT 1 TMI+GLLRC + +++ LF+ MPEKDSISWT ++TGLT Sbjct: 209 TMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLT 246 Score = 81.6 bits (200), Expect = 6e-14 Identities = 44/146 (30%), Positives = 79/146 (54%) Frame = -3 Query: 474 EMQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXX 295 E +++FD M KD +SW T+I+G + +E+V +K M +G +++ TF ++ Sbjct: 222 EAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFC-MDQFTFGSVLTAC 280 Query: 294 XXXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYN 115 GKQIH I++ +Q +FVGS L+DMY K + A+ F +M +N++ + Sbjct: 281 GGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWT 340 Query: 114 TMISGLLRCGMVEDSKHLFNEMPEKD 37 M+ G + G E++ +F +M + Sbjct: 341 AMLVGYGQNGYSEEAVRIFCDMQRNE 366 Score = 65.5 bits (158), Expect = 4e-09 Identities = 39/140 (27%), Positives = 66/140 (47%) Frame = -3 Query: 468 QEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXXXX 289 + +F +M K+ +SW ++ GY EE+VR + M R+ + + T ++ Sbjct: 325 EAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEI-HPDDFTLGSVISSCAN 383 Query: 288 XXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTM 109 G Q HGQ L G +V V + L+ +Y K G + A + F EM R+ V + + Sbjct: 384 LASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTAL 443 Query: 108 ISGLLRCGMVEDSKHLFNEM 49 +SG + G ++ LF M Sbjct: 444 VSGYAQFGKANETISLFETM 463 Score = 58.5 bits (140), Expect = 5e-07 Identities = 24/87 (27%), Positives = 52/87 (59%) Frame = -3 Query: 267 KQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTMISGLLRC 88 K++H +I++ F+ + L++ Y K G + A+ F+ + + NL +NT++S + Sbjct: 25 KKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKL 84 Query: 87 GMVEDSKHLFNEMPEKDSISWTAMVTG 7 G ++D + +F+ MP D +SW ++++G Sbjct: 85 GYLQDMQRVFDSMPNHDVVSWNSLLSG 111 >ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 748 Score = 192 bits (489), Expect = 2e-47 Identities = 94/159 (59%), Positives = 122/159 (76%), Gaps = 1/159 (0%) Frame = -3 Query: 474 EMQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLR-DGSGNLNRITFSTMXXX 298 EM+ +FD M +DGVSWN++ISGYA C + +SV+ Y LML+ DGS NLNRITFST+ Sbjct: 93 EMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLIL 152 Query: 297 XXXXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIY 118 LG+QIHG ++K GF +YVFVGSPLVDMYSK G++ A++ F+E+ E+N+V+Y Sbjct: 153 ASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMY 212 Query: 117 NTMISGLLRCGMVEDSKHLFNEMPEKDSISWTAMVTGLT 1 NT+I GL+RCG VEDSK LF EM E+DSISWT+M+TG T Sbjct: 213 NTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFT 251 Score = 69.7 bits (169), Expect = 2e-10 Identities = 35/142 (24%), Positives = 76/142 (53%) Frame = -3 Query: 474 EMQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXX 295 + + +F M +D +SW ++I+G+ + +++ ++ M + +++ TF ++ Sbjct: 227 DSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENL-QMDQYTFGSVLTAC 285 Query: 294 XXXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYN 115 GKQ+H I++ ++ +FV S LVDMY K + A+ F++M+ +N+V + Sbjct: 286 GGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWT 345 Query: 114 TMISGLLRCGMVEDSKHLFNEM 49 M+ G + G E++ F++M Sbjct: 346 AMLVGYGQNGYSEEAVKTFSDM 367 Score = 65.1 bits (157), Expect = 6e-09 Identities = 37/140 (26%), Positives = 68/140 (48%) Frame = -3 Query: 468 QEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXXXX 289 + +F +MT K+ VSW ++ GY EE+V+ + M + G + T ++ Sbjct: 330 EAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGI-EPDDFTLGSVISSCAN 388 Query: 288 XXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTM 109 G Q H + L G +++ V + LV +Y K G + ++ R F E+S ++ V + + Sbjct: 389 LASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTAL 448 Query: 108 ISGLLRCGMVEDSKHLFNEM 49 +SG + G ++ LF M Sbjct: 449 VSGYAQFGKANETIGLFESM 468 Score = 61.2 bits (147), Expect = 8e-08 Identities = 27/87 (31%), Positives = 51/87 (58%) Frame = -3 Query: 267 KQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTMISGLLRC 88 K +H I+K F+ + L+ Y+K G + A + F++M NL +NT++S + Sbjct: 29 KNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKL 88 Query: 87 GMVEDSKHLFNEMPEKDSISWTAMVTG 7 G V + ++LF+ MP +D +SW ++++G Sbjct: 89 GRVSEMEYLFDAMPRRDGVSWNSLISG 115 >ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Vitis vinifera] gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera] Length = 743 Score = 189 bits (481), Expect = 2e-46 Identities = 95/157 (60%), Positives = 120/157 (76%) Frame = -3 Query: 474 EMQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXX 295 +MQ+IF+ M +DGVSWN ISGYAN ++VR YKLML+D + NLNRITFSTM Sbjct: 89 QMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILC 148 Query: 294 XXXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYN 115 LG+QI+GQILK GF + VFVGSPLVDMY+K GL+ +AKR F+EM ERN+V+ N Sbjct: 149 SKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCN 208 Query: 114 TMISGLLRCGMVEDSKHLFNEMPEKDSISWTAMVTGL 4 TMI+GL+RCGM+E+S+ LF + E+DSISWT M+TGL Sbjct: 209 TMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGL 245 Score = 74.3 bits (181), Expect = 9e-12 Identities = 41/142 (28%), Positives = 74/142 (52%) Frame = -3 Query: 474 EMQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXX 295 E Q +F + +D +SW +I+G + E++ ++ M G +++ TF ++ Sbjct: 222 ESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFA-MDQFTFGSVLTAC 280 Query: 294 XXXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYN 115 GKQIH +++ + VFVGS LVDMYSK + A+ F+ M ++N++ + Sbjct: 281 GSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWT 340 Query: 114 TMISGLLRCGMVEDSKHLFNEM 49 M+ G + G E++ +F EM Sbjct: 341 AMLVGYGQNGFSEEAVKIFFEM 362 Score = 62.0 bits (149), Expect = 5e-08 Identities = 36/140 (25%), Positives = 66/140 (47%) Frame = -3 Query: 468 QEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXXXX 289 + +F RM K+ +SW ++ GY EE+V+ + M R+G + T ++ Sbjct: 325 ETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGV-EPDDFTLGSVISSCAN 383 Query: 288 XXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTM 109 G Q H + L G +++ V + L+ +Y K G + R F EM+ R+ V + + Sbjct: 384 LASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTAL 443 Query: 108 ISGLLRCGMVEDSKHLFNEM 49 ++G + G ++ LF M Sbjct: 444 LAGYAQFGKANETIGLFERM 463 Score = 57.0 bits (136), Expect = 2e-06 Identities = 27/87 (31%), Positives = 48/87 (55%) Frame = -3 Query: 267 KQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTMISGLLRC 88 K++H ILK Q F+ + L+ Y K G + A F+ + + NL +NT++S + Sbjct: 25 KKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKL 84 Query: 87 GMVEDSKHLFNEMPEKDSISWTAMVTG 7 G++ + +FN MP +D +SW ++G Sbjct: 85 GLLSQMQQIFNLMPFRDGVSWNLAISG 111 >ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 515 Score = 189 bits (481), Expect = 2e-46 Identities = 92/157 (58%), Positives = 120/157 (76%) Frame = -3 Query: 474 EMQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXX 295 +M+EIF M +DGVSWNT++SGYA+ ++V+ Y M+RDG NLNRITFSTM Sbjct: 92 KMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSMMRDGVFNLNRITFSTMLILA 151 Query: 294 XXXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYN 115 LG+QIHG I+K GF YVFVGSPLVDMY+K+GL+ EAK+ F+EM +RN+V++N Sbjct: 152 SSRELVDLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMPDRNVVMHN 211 Query: 114 TMISGLLRCGMVEDSKHLFNEMPEKDSISWTAMVTGL 4 TMI+GLL+ GM+EDSK LF+ M E+D+ISWT M+TGL Sbjct: 212 TMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGL 248 Score = 79.3 bits (194), Expect = 3e-13 Identities = 43/142 (30%), Positives = 77/142 (54%) Frame = -3 Query: 474 EMQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXX 295 + + +F M +D +SW T+I+G + EE++ F++ M DG G +++ TF ++ Sbjct: 225 DSKRLFHGMKERDNISWTTMITGLVQNGLEEEAIDFFRQMRLDGIG-MDQYTFGSVLTAC 283 Query: 294 XXXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYN 115 GKQ+H I++ VFVGS LVDMY K ++ A+ F+ M +N+V + Sbjct: 284 GGLTALREGKQVHAFIIRSDCTDNVFVGSALVDMYCKCKILRYAEAVFKRMKYKNVVSWT 343 Query: 114 TMISGLLRCGMVEDSKHLFNEM 49 ++ G + G E++ +F +M Sbjct: 344 AILVGYGQNGFSEEAVKVFCDM 365 Score = 65.9 bits (159), Expect = 3e-09 Identities = 40/140 (28%), Positives = 67/140 (47%) Frame = -3 Query: 468 QEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXXXX 289 + +F RM K+ VSW ++ GY EE+V+ + M R+G + T ++ Sbjct: 328 EAVFKRMKYKNVVSWTAILVGYGQNGFSEEAVKVFCDMQRNGI-EPDDFTLGSVISSCAN 386 Query: 288 XXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTM 109 G Q H + L G + + V + LV +Y K G + ++ R F EM+ R+ V + + Sbjct: 387 LASLEEGAQFHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVSWTAL 446 Query: 108 ISGLLRCGMVEDSKHLFNEM 49 ISG + G ++ LF M Sbjct: 447 ISGYAQFGKARETIELFERM 466 Score = 55.8 bits (133), Expect = 3e-06 Identities = 26/87 (29%), Positives = 49/87 (56%) Frame = -3 Query: 267 KQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTMISGLLRC 88 K++H I+K F+ + L++ Y K G + A+ F+ M +RN +NT++S + Sbjct: 28 KKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQRNSFSWNTILSAYSKS 87 Query: 87 GMVEDSKHLFNEMPEKDSISWTAMVTG 7 G + K +F+ MP +D +SW +++G Sbjct: 88 GHLPKMKEIFSLMPNRDGVSWNTILSG 114 >ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa] Length = 743 Score = 182 bits (463), Expect = 2e-44 Identities = 94/156 (60%), Positives = 115/156 (73%) Frame = -3 Query: 471 MQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXXX 292 MQEIF M +DGVSWN++ISGY E+V+ Y M++DG NLNRITFSTM Sbjct: 90 MQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVS 149 Query: 291 XXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNT 112 LG+QIHGQI+K GF AYVFVGS LVDMY+K GL+ A + F+E+ ERN+V+YNT Sbjct: 150 SQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNT 209 Query: 111 MISGLLRCGMVEDSKHLFNEMPEKDSISWTAMVTGL 4 MI+GLLR GMV+DSK LF+ M E+DSISWT M+TGL Sbjct: 210 MITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGL 245 Score = 75.5 bits (184), Expect = 4e-12 Identities = 41/142 (28%), Positives = 77/142 (54%) Frame = -3 Query: 474 EMQEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXX 295 + + +F M +D +SW T+I+G + E++ ++ M ++G +++ TF ++ Sbjct: 222 DSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMA-MDQYTFGSVLTAC 280 Query: 294 XXXXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYN 115 GK+IH I++ G+ VFVGS LVDMY K + A+ F+ M+ +N+V + Sbjct: 281 GGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWT 340 Query: 114 TMISGLLRCGMVEDSKHLFNEM 49 M+ G + G E++ +F +M Sbjct: 341 AMLVGYGQNGFSEEAVRVFCDM 362 Score = 68.9 bits (167), Expect = 4e-10 Identities = 40/140 (28%), Positives = 69/140 (49%) Frame = -3 Query: 468 QEIFDRMTVKDGVSWNTVISGYANCRMGEESVRFYKLMLRDGSGNLNRITFSTMXXXXXX 289 + +F RM K+ VSW ++ GY EE+VR + M R+G + T ++ Sbjct: 325 EAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGI-EPDDFTLGSVISSCAN 383 Query: 288 XXXXXLGKQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTM 109 G Q H Q L G +++ V + L+ +Y K G + ++ + F+EMS R+ V + + Sbjct: 384 LASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTAL 443 Query: 108 ISGLLRCGMVEDSKHLFNEM 49 +SG + G ++ LF M Sbjct: 444 VSGYAQFGKANETIDLFERM 463 Score = 58.2 bits (139), Expect = 7e-07 Identities = 26/87 (29%), Positives = 51/87 (58%) Frame = -3 Query: 267 KQIHGQILKLGFQAYVFVGSPLVDMYSKSGLMVEAKRTFEEMSERNLVIYNTMISGLLRC 88 K++H I+K F+ + L++ YSK G + A+ F++M + N +NTM+S + Sbjct: 25 KKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKS 84 Query: 87 GMVEDSKHLFNEMPEKDSISWTAMVTG 7 G + + +F+ MP +D +SW ++++G Sbjct: 85 GDLSTMQEIFSIMPNRDGVSWNSLISG 111