BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011636
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat...   144   1e-32
ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|2...   140   1e-31
ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat...   133   1e-29
ref|XP_003628710.1| Pentatricopeptide repeat-containing protein ...   131   6e-29
ref|XP_002514567.1| pentatricopeptide repeat-containing protein,...   130   8e-29

>ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera] gi|297738214|emb|CBI27415.3|
           unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  144 bits (362), Expect = 1e-32
 Identities = 67/95 (70%), Positives = 76/95 (80%)
 Frame = +2

Query: 14  MSSLSNHYTSLLKLCCETQNHNQAKKLHCHILKTFKYPDTFLSNNLINTYSKFKNLTYAR 193
           MSS SN+Y SLLKLCCE+QN  QAKKLHC ILKT K P+TFLSNNLI  Y K  NL YA 
Sbjct: 1   MSSSSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAH 60

Query: 194 NVFDQIPQPNFFSWNTLLSAYSKYGWVSEMQELFN 298
           +VFD IPQPN FSWNT+LS YSK G +S+MQ++FN
Sbjct: 61  HVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFN 95



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 24/87 (27%), Positives = 48/87 (55%)
 Frame = +2

Query: 35  YTSLLKLCCETQNHNQAKKLHCHILKTFKYPDTFLSNNLINTYSKFKNLTYARNVFDQIP 214
           + S+L  C       + K++H ++++T    + F+ + L++ YSK +++  A  VF ++P
Sbjct: 273 FGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMP 332

Query: 215 QPNFFSWNTLLSAYSKYGWVSEMQELF 295
           Q N  SW  +L  Y + G+  E  ++F
Sbjct: 333 QKNVISWTAMLVGYGQNGFSEEAVKIF 359


>ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|222863951|gb|EEF01082.1|
           predicted protein [Populus trichocarpa]
          Length = 743

 Score =  140 bits (353), Expect = 1e-31
 Identities = 65/95 (68%), Positives = 80/95 (84%)
 Frame = +2

Query: 14  MSSLSNHYTSLLKLCCETQNHNQAKKLHCHILKTFKYPDTFLSNNLINTYSKFKNLTYAR 193
           MS+ SN+Y+SLLKLCCET+N  QAKKLHC I+K+   P+TFL NNLIN YSK  N+TYAR
Sbjct: 1   MSNSSNYYSSLLKLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYAR 60

Query: 194 NVFDQIPQPNFFSWNTLLSAYSKYGWVSEMQELFN 298
           +VFD++PQPN FSWNT+LSAYSK G +S MQE+F+
Sbjct: 61  HVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFS 95


>ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
           gi|449493520|ref|XP_004159329.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  133 bits (335), Expect = 1e-29
 Identities = 61/95 (64%), Positives = 73/95 (76%)
 Frame = +2

Query: 14  MSSLSNHYTSLLKLCCETQNHNQAKKLHCHILKTFKYPDTFLSNNLINTYSKFKNLTYAR 193
           MSS SN+YT+ LK CCE +N  Q KKLHC I++T   P+TFL NNLINTY K  +L  AR
Sbjct: 1   MSSSSNYYTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNAR 60

Query: 194 NVFDQIPQPNFFSWNTLLSAYSKYGWVSEMQELFN 298
           NVFD IPQPN FSWNTLLSAYSK G++ +MQ +F+
Sbjct: 61  NVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFD 95


>ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355522732|gb|AET03186.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  131 bits (329), Expect = 6e-29
 Identities = 60/94 (63%), Positives = 74/94 (78%)
 Frame = +2

Query: 17  SSLSNHYTSLLKLCCETQNHNQAKKLHCHILKTFKYPDTFLSNNLINTYSKFKNLTYARN 196
           SS SNHY +LLKLCCET N  +AK LH HI+KT  YP+TFL NNLI++Y+K  ++ YA  
Sbjct: 6   SSSSNHYCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACK 65

Query: 197 VFDQIPQPNFFSWNTLLSAYSKYGWVSEMQELFN 298
           VFDQ+P PN +SWNT+LSAYSK G VSEM+ LF+
Sbjct: 66  VFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFD 99


>ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546171|gb|EEF47673.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 515

 Score =  130 bits (328), Expect = 8e-29
 Identities = 59/95 (62%), Positives = 75/95 (78%)
 Frame = +2

Query: 14  MSSLSNHYTSLLKLCCETQNHNQAKKLHCHILKTFKYPDTFLSNNLINTYSKFKNLTYAR 193
           MSS SN Y+SLLK CCET+N +QAKKLHCHI+KT   P+ FL NNL+N Y K  N+ YAR
Sbjct: 4   MSSSSNQYSSLLKFCCETRNQSQAKKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYAR 63

Query: 194 NVFDQIPQPNFFSWNTLLSAYSKYGWVSEMQELFN 298
           ++FD +PQ N FSWNT+LSAYSK G + +M+E+F+
Sbjct: 64  HLFDGMPQRNSFSWNTILSAYSKSGHLPKMKEIFS 98