BLASTX nr result

ID: Coptis24_contig00011631 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011631
         (568 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262903.1| PREDICTED: ran-binding protein 1 homolog c [...   106   2e-21
ref|NP_200667.2| Ran-binding protein 1-c [Arabidopsis thaliana] ...   103   3e-20
ref|XP_002879247.1| hypothetical protein ARALYDRAFT_901981 [Arab...   103   3e-20
dbj|BAA97328.1| unnamed protein product [Arabidopsis thaliana]        103   3e-20
ref|XP_004145252.1| PREDICTED: ran-binding protein 1 homolog b-l...   102   3e-20

>ref|XP_002262903.1| PREDICTED: ran-binding protein 1 homolog c [Vitis vinifera]
           gi|296081117|emb|CBI18249.3| unnamed protein product
           [Vitis vinifera]
          Length = 221

 Score =  106 bits (265), Expect = 2e-21
 Identities = 59/140 (42%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
 Frame = +1

Query: 58  EVEVWEAKHIGSVKFLKHKKSGKVRLVIKESKSLKICANHPISSGMVVKLCGGQCSACHW 237
           E + W+ + +G+VKFLKHK SGKVRLV+++SK+LKICANH +   M V+   G   +C W
Sbjct: 60  EGKQWKERGVGTVKFLKHKGSGKVRLVMRQSKTLKICANHLVLPTMTVQEHSGNDKSCVW 119

Query: 238 EATDFSDGFSKERKFGLNFKYEEDRDTFMQTFNESADI----EDRDGNDAAIQLEEQQKL 405
            ATDF+DG  K+  F + F   E+  TFM+ F E A+     E+ +   AA  L E+  +
Sbjct: 120 HATDFADGELKDELFCIRFASVENCKTFMEMFQEVAESQGKKEESEDASAAAGLLEKLSV 179

Query: 406 LDSRVENAGAEVEHIITGEE 465
            DS+ E+ G E   + T E+
Sbjct: 180 GDSKTEDKGQEEGSLATKEK 199


>ref|NP_200667.2| Ran-binding protein 1-c [Arabidopsis thaliana]
           gi|75275082|sp|P92985.1|RBP1C_ARATH RecName:
           Full=Ran-binding protein 1 homolog c
           gi|1732511|gb|AAB38776.1| Ran binding protein 1 homolog
           [Arabidopsis thaliana] gi|90568020|gb|ABD94080.1|
           At5g58590 [Arabidopsis thaliana]
           gi|332009690|gb|AED97073.1| Ran-binding protein 1-c
           [Arabidopsis thaliana]
          Length = 219

 Score =  103 bits (256), Expect = 3e-20
 Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
 Frame = +1

Query: 70  WEAKHIGSVKFLKHKKSGKVRLVIKESKSLKICANHPISSGMVVKLCGGQCSACHWEATD 249
           W+ +  G+VK LKHK++GKVRLV+++SK+LKICANH ISSGM V+   G   +C W ATD
Sbjct: 65  WKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATD 124

Query: 250 FSDGFSKERKFGLNFKYEEDRDTFMQTFNESADIE----DRDGNDAAIQLEEQQKLLDSR 417
           FSDG  K+  F + F   E+  TFM+ F E A+ +    +    D A  L E   + ++ 
Sbjct: 125 FSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSVEENI 184

Query: 418 VENAGAEVEHIITGEEDED 474
            E    E E     +ED++
Sbjct: 185 SEEKAKEAEEKEPAKEDKE 203



 Score = 55.1 bits (131), Expect = 8e-06
 Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 8/56 (14%)
 Frame = +1

Query: 421 ENAGAEVEHII--------TGEEDEDVLLQMSSKLYEFERKGDQWKKLCSGTVRLL 564
           E+ GA+V  I+        TGEEDED +L + SK+Y F+++G+QWK+  +GTV+LL
Sbjct: 21  EDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKLL 76


>ref|XP_002879247.1| hypothetical protein ARALYDRAFT_901981 [Arabidopsis lyrata subsp.
           lyrata] gi|297325086|gb|EFH55506.1| hypothetical protein
           ARALYDRAFT_901981 [Arabidopsis lyrata subsp. lyrata]
          Length = 220

 Score =  103 bits (256), Expect = 3e-20
 Identities = 59/143 (41%), Positives = 84/143 (58%), Gaps = 9/143 (6%)
 Frame = +1

Query: 70  WEAKHIGSVKFLKHKKSGKVRLVIKESKSLKICANHPISSGMVVKLCGGQCSACHWEATD 249
           W+ +  G+VKFLKH+ SGK+RLV+++SK+LKICANH + SGM V+   G   +C W A D
Sbjct: 68  WKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARD 127

Query: 250 FSDGFSKERKFGLNFKYEEDRDTFMQTFNESADIED-----RDGNDAAIQLE----EQQK 402
           FSDG  K+  F + F   E+   FMQ F E A+ E+     +D +D A  LE    E++K
Sbjct: 128 FSDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTASLLEKLTVEEKK 187

Query: 403 LLDSRVENAGAEVEHIITGEEDE 471
             +   E A  + E+  +   DE
Sbjct: 188 TEEKPAEKAEEKEENKKSEAVDE 210


>dbj|BAA97328.1| unnamed protein product [Arabidopsis thaliana]
          Length = 248

 Score =  103 bits (256), Expect = 3e-20
 Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
 Frame = +1

Query: 70  WEAKHIGSVKFLKHKKSGKVRLVIKESKSLKICANHPISSGMVVKLCGGQCSACHWEATD 249
           W+ +  G+VK LKHK++GKVRLV+++SK+LKICANH ISSGM V+   G   +C W ATD
Sbjct: 65  WKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATD 124

Query: 250 FSDGFSKERKFGLNFKYEEDRDTFMQTFNESADIE----DRDGNDAAIQLEEQQKLLDSR 417
           FSDG  K+  F + F   E+  TFM+ F E A+ +    +    D A  L E   + ++ 
Sbjct: 125 FSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSVEENI 184

Query: 418 VENAGAEVEHIITGEEDED 474
            E    E E     +ED++
Sbjct: 185 SEEKAKEAEEKEPAKEDKE 203



 Score = 55.1 bits (131), Expect = 8e-06
 Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 8/56 (14%)
 Frame = +1

Query: 421 ENAGAEVEHII--------TGEEDEDVLLQMSSKLYEFERKGDQWKKLCSGTVRLL 564
           E+ GA+V  I+        TGEEDED +L + SK+Y F+++G+QWK+  +GTV+LL
Sbjct: 21  EDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKLL 76


>ref|XP_004145252.1| PREDICTED: ran-binding protein 1 homolog b-like [Cucumis sativus]
           gi|449471757|ref|XP_004153400.1| PREDICTED: ran-binding
           protein 1 homolog b-like [Cucumis sativus]
          Length = 216

 Score =  102 bits (255), Expect = 3e-20
 Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 4/157 (2%)
 Frame = +1

Query: 70  WEAKHIGSVKFLKHKKSGKVRLVIKESKSLKICANHPISSGMVVKLCGGQCSACHWEATD 249
           W+ +  G+VKFLKHK++GKVRLV+++SK+LKICANH +   M V+   G   +C W ATD
Sbjct: 64  WKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWHATD 123

Query: 250 FSDGFSKERKFGLNFKYEEDRDTFMQTFNESADIEDRDGND----AAIQLEEQQKLLDSR 417
           F+DG  K+  F + F   E+  +FM+TF E A+ + + G +    AA  L E   + + +
Sbjct: 124 FADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLETLSVEEKK 183

Query: 418 VENAGAEVEHIITGEEDEDVLLQMSSKLYEFERKGDQ 528
            E+  AE E     +EDE    +   +  E E+K D+
Sbjct: 184 TEDK-AEEEPAKVKKEDEP---KGEPEKSEAEKKNDE 216


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