BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011617
         (4203 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278608.2| PREDICTED: probable ATP-dependent RNA helica...  1548   0.0  
emb|CBI22072.3| unnamed protein product [Vitis vinifera]             1544   0.0  
ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|2...  1481   0.0  
ref|NP_001044362.1| Os01g0767700 [Oryza sativa Japonica Group] g...  1460   0.0  
ref|XP_003567152.1| PREDICTED: probable ATP-dependent RNA helica...  1432   0.0  

>ref|XP_002278608.2| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Vitis
            vinifera]
          Length = 1231

 Score = 1548 bits (4008), Expect = 0.0
 Identities = 808/1268 (63%), Positives = 957/1268 (75%), Gaps = 16/1268 (1%)
 Frame = +1

Query: 28   MVRSGKKKGYSKNQIDENPNIEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPERAVVHM 207
            M RSGKK+   K+    NP + E T IRIS+ + +F +  ++VYTFEA LTN ERAVVH 
Sbjct: 1    MTRSGKKR--QKDGEQNNPGVAEGTRIRISRALQEFRETHNEVYTFEANLTNHERAVVHE 58

Query: 208  LCRKRGLVSKSTGKGKQRRVSICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRDLFTRYP 387
            +CRK G+ SKS+G+G QRRVS+                   L FSEE KEVL DLFTRYP
Sbjct: 59   VCRKMGMTSKSSGRGSQRRVSVYKTKKKVDTKKEEGNPY--LNFSEEAKEVLLDLFTRYP 116

Query: 388  PSDGEQKGQMLTDHIREVDKKLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTPKLRQID 567
            P D E   QM+ +   + +K   KKDD F +PSM+KAEIAK+++ LA R +  P LRQI 
Sbjct: 117  PDDKEMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKAEIAKKVELLASRIEEDPHLRQIT 176

Query: 568  GERSKLPIASFREAITSTIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEACKIICTQ 747
              RSKLPIASF++ ITSTIE++QVVLISGETGCGKTTQVPQ++LDYMWGKGEACKI+CTQ
Sbjct: 177  EGRSKLPIASFKDVITSTIESHQVVLISGETGCGKTTQVPQFVLDYMWGKGEACKIVCTQ 236

Query: 748  PRRISATSVAERISYERGEKVGESIGYKIRLETKGGKRSSIMFCTNGILLRVLVGKGTND 927
            PRRISATSVAERIS+E+GE VG+S+GYKIRLE+KGG+ SSI+FCTNGILLRVLV KGT+ 
Sbjct: 237  PRRISATSVAERISFEKGENVGDSVGYKIRLESKGGRHSSIIFCTNGILLRVLVSKGTDR 296

Query: 928  SKTASEDISSKESIFGVTHIIVDEIHERDRFSDFILTILRDVLPSHPHLRLILMSATLDA 1107
             K  +   ++K  I  +THIIVDEIHERDR+SDF+L ILRD+L S+PHLRLILMSAT+DA
Sbjct: 297  LKPEALRKAAKRDISDITHIIVDEIHERDRYSDFMLAILRDMLASYPHLRLILMSATIDA 356

Query: 1108 ERFSQYFGGCPVIRVPGFTHPVKNFYLEDILSILKSSESNHLDSLSPNDTVQGADLTEDY 1287
            ERFSQYFGGCP+IRVPGFT+PVK FYLED+LSILKS+ +N+LDS   +  V+   L EDY
Sbjct: 357  ERFSQYFGGCPIIRVPGFTYPVKTFYLEDVLSILKSTGNNNLDSTLLSLPVEDPKLIEDY 416

Query: 1288 TASLDEAINLAWSSDEFDPLLELVSSEATPRILNYQDSLNGASPLMVFAGKGNVSDVCML 1467
              +LDEAINLAWS+DEFDPLL+ VSSE TP++ NYQ S  G +PLMVFAGKG V+DVCM+
Sbjct: 417  GVALDEAINLAWSNDEFDPLLDFVSSEGTPQVFNYQHSSTGLTPLMVFAGKGRVADVCMM 476

Query: 1468 LSLGADCNLCAKDGKTAVEWAQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKYLASVNP 1647
            LS GADC+L A D  TA++ A++EN  E  E+IK H++N++S SVEE  LL+KYLA+ NP
Sbjct: 477  LSFGADCHLKANDDTTALDLAERENHREAAEMIKQHMENLLSNSVEEQQLLDKYLATNNP 536

Query: 1648 EHIDIILIERLLRKICTDSDEGAVLIFLPGWDDINKTRERLLASPFFEDTSKFVIIALHS 1827
            E ID+ L+E+LLRKIC DS +GA+L+FLPGWDDIN+TRE+LL++ FF+D+SKFV+I+LHS
Sbjct: 537  EIIDVALVEQLLRKICNDSKDGAILVFLPGWDDINRTREKLLSASFFKDSSKFVVISLHS 596

Query: 1828 MVPSVEQKKVFKRPPHGSRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTL 2007
            MVPSVEQKKVFKRPP G RKI+LSTNI+ETA+TIDDVVYVIDSGRMKEKSYDPY+NVSTL
Sbjct: 597  MVPSVEQKKVFKRPPPGCRKIVLSTNISETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL 656

Query: 2008 HSSWVSKASAKQREGRAGRCQPGICYHLYSKTRATSLPEFQVPEIKRMPIEELCLQVKLL 2187
             S+W+SKASAKQREGRAGRC+PG+CYHLYSK RA SLP+FQVPEIKRMPIEELCLQVKLL
Sbjct: 657  QSAWISKASAKQREGRAGRCRPGVCYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLL 716

Query: 2188 DPNCRIVDFLQKTLDPPISETIRNAILVLQDIGALSPDEGLTELGEKLGSLPVHPSTSKM 2367
            DPNC+I DFL+KTLDPP+ ETIRNA++VLQDIGALS DE LTELG+KLGSLPVHP TSKM
Sbjct: 717  DPNCKIEDFLRKTLDPPVFETIRNAVIVLQDIGALSVDEKLTELGKKLGSLPVHPLTSKM 776

Query: 2368 LFFAILMNCLEPALTLACASDYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSDQLMVIA 2547
            LFFAIL+NCL+PALTLACASDYRDPF LPM+P+             SLYGGHSDQL VIA
Sbjct: 777  LFFAILLNCLDPALTLACASDYRDPFTLPMLPHEKKRATAAKAELASLYGGHSDQLAVIA 836

Query: 2548 AYDCWKRAKDKGQEAQFCSEYFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQCSLNAR 2727
            A++CWK AK+KGQEAQFCS+YFVSSGTM+ML+ MR QLQ ELI  GF+ ED S CSLNAR
Sbjct: 837  AFECWKSAKEKGQEAQFCSQYFVSSGTMHMLAGMRKQLQTELIRNGFIPEDVSSCSLNAR 896

Query: 2728 DPGILHAVLVAGLYPMVGRLLPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFDQSNSQP 2907
            DPGI+HAVLVAGLYPMVGRLLPP KSG+R VVETA GAKVRLHPHS+NFKLSF +S+ +P
Sbjct: 897  DPGIIHAVLVAGLYPMVGRLLPPHKSGKRSVVETASGAKVRLHPHSNNFKLSFKKSDGRP 956

Query: 2908 LVIYDEITRGDGGMYIRNCSIVGPYPLLIHATEMVVAPA--------XXXXXXXXXXXXX 3063
            L+IYDEITRGDGGM+IRNC+++GP PLL+ ATE+VVAP                      
Sbjct: 957  LIIYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPGKGNDDDDEDCDDDSDGDDIDE 1016

Query: 3064 XXXXXXGIELNT-ISGRQEERIMSSPDNTVSVVIDRWLKFESTALDVAQIYCLRERLRAA 3240
                  G E N  ++G+Q E+IMSSPDNTV+VV+DRW  FESTALDVAQIYCLRERL AA
Sbjct: 1017 DDSEGDGKEANNKLNGQQGEKIMSSPDNTVAVVVDRWHSFESTALDVAQIYCLRERLTAA 1076

Query: 3241 ILFKVKYPSKVLPPALGASMYAIACILSYDGLSGISPSLKTIGSLTSMKNATEPSGTDS- 3417
            I FK  +  +VLPP LGAS+YAIACILSYDGLSGIS SL+++ SLTSM NATE   + S 
Sbjct: 1077 IFFKATHAREVLPPMLGASVYAIACILSYDGLSGISLSLESVDSLTSMVNATEIDNSASG 1136

Query: 3418 ------KPSAFLRSLLSDAPAPPETSPHYHKPRQMSRSMHRSGTSKPVVEQPHMQIGIDP 3579
                   P+ FL++L+S            H  R  S S H           P       P
Sbjct: 1137 RRRMGQNPNNFLKTLMS------------HGTRHKSPSKHHKNKGAENWNSPPTYNAWSP 1184

Query: 3580 YQQTHFQGPLMHPVYVQTQLPGPFMQPIYVPIGLYPVQRTXXXXXXXXXXXXXXXXRTDS 3759
            Y         M P     Q P    +P +   G                       R DS
Sbjct: 1185 Y---------MPPSLTSNQRPSS-QRPSFSGYG--------------SSMHGPYGPRGDS 1220

Query: 3760 FKRRRGTG 3783
            FKR+RG G
Sbjct: 1221 FKRQRGNG 1228


>emb|CBI22072.3| unnamed protein product [Vitis vinifera]
          Length = 1190

 Score = 1544 bits (3998), Expect = 0.0
 Identities = 807/1259 (64%), Positives = 953/1259 (75%), Gaps = 7/1259 (0%)
 Frame = +1

Query: 28   MVRSGKKKGYSKNQIDENPNIEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPERAVVHM 207
            M RSGKK+   K+    NP + E T IRIS+ + +F +  ++VYTFEA LTN ERAVVH 
Sbjct: 1    MTRSGKKR--QKDGEQNNPGVAEGTRIRISRALQEFRETHNEVYTFEANLTNHERAVVHE 58

Query: 208  LCRKRGLVSKSTGKGKQRRVSICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRDLFTRYP 387
            +CRK G+ SKS+G+G QRRVS+                   L FSEE KEVL DLFTRYP
Sbjct: 59   VCRKMGMTSKSSGRGSQRRVSVYKTKKKVDTKKEEGNPY--LNFSEEAKEVLLDLFTRYP 116

Query: 388  PSDGEQKGQMLTDHIREVDKKLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTPKLRQID 567
            P D E   QM+ +   + +K   KKDD F +PSM+KAEIAK+++ LA R +  P LRQI 
Sbjct: 117  PDDKEMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKAEIAKKVELLASRIEEDPHLRQIT 176

Query: 568  GERSKLPIASFREAITSTIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEACKIICTQ 747
              RSKLPIASF++ ITSTIE++QVVLISGETGCGKTTQVPQ++LDYMWGKGEACKI+CTQ
Sbjct: 177  EGRSKLPIASFKDVITSTIESHQVVLISGETGCGKTTQVPQFVLDYMWGKGEACKIVCTQ 236

Query: 748  PRRISATSVAERISYERGEKVGESIGYKIRLETKGGKRSSIMFCTNGILLRVLVGKGTND 927
            PRRISATSVAERIS+E+GE VG+S+GYKIRLE+KGG+ SSI+FCTNGILLRVLV KGT+ 
Sbjct: 237  PRRISATSVAERISFEKGENVGDSVGYKIRLESKGGRHSSIIFCTNGILLRVLVSKGTD- 295

Query: 928  SKTASEDISSKESIFGVTHIIVDEIHERDRFSDFILTILRDVLPSHPHLRLILMSATLDA 1107
                  DIS       +THIIVDEIHERDR+SDF+L ILRD+L S+PHLRLILMSAT+DA
Sbjct: 296  -----RDISD------ITHIIVDEIHERDRYSDFMLAILRDMLASYPHLRLILMSATIDA 344

Query: 1108 ERFSQYFGGCPVIRVPGFTHPVKNFYLEDILSILKSSESNHLDSLSPNDTVQGADLTEDY 1287
            ERFSQYFGGCP+IRVPGFT+PVK FYLED+LSILKS+ +N+LDS   +  V+   L EDY
Sbjct: 345  ERFSQYFGGCPIIRVPGFTYPVKTFYLEDVLSILKSTGNNNLDSTLLSLPVEDPKLIEDY 404

Query: 1288 TASLDEAINLAWSSDEFDPLLELVSSEATPRILNYQDSLNGASPLMVFAGKGNVSDVCML 1467
              +LDEAINLAWS+DEFDPLL+ VSSE TP++ NYQ S  G +PLMVFAGKG V+DVCM+
Sbjct: 405  GVALDEAINLAWSNDEFDPLLDFVSSEGTPQVFNYQHSSTGLTPLMVFAGKGRVADVCMM 464

Query: 1468 LSLGADCNLCAKDGKTAVEWAQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKYLASVNP 1647
            LS GADC+L A D  TA++ A++EN  E  E+IK H++N++S SVEE  LL+KYLA+ NP
Sbjct: 465  LSFGADCHLKANDDTTALDLAERENHREAAEMIKQHMENLLSNSVEEQQLLDKYLATNNP 524

Query: 1648 EHIDIILIERLLRKICTDSDEGAVLIFLPGWDDINKTRERLLASPFFEDTSKFVIIALHS 1827
            E ID+ L+E+LLRKIC DS +GA+L+FLPGWDDIN+TRE+LL++ FF+D+SKFV+I+LHS
Sbjct: 525  EIIDVALVEQLLRKICNDSKDGAILVFLPGWDDINRTREKLLSASFFKDSSKFVVISLHS 584

Query: 1828 MVPSVEQKKVFKRPPHGSRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTL 2007
            MVPSVEQKKVFKRPP G RKI+LSTNI+ETA+TIDDVVYVIDSGRMKEKSYDPY+NVSTL
Sbjct: 585  MVPSVEQKKVFKRPPPGCRKIVLSTNISETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL 644

Query: 2008 HSSWVSKASAKQREGRAGRCQPGICYHLYSKTRATSLPEFQVPEIKRMPIEELCLQVKLL 2187
             S+W+SKASAKQREGRAGRC+PG+CYHLYSK RA SLP+FQVPEIKRMPIEELCLQVKLL
Sbjct: 645  QSAWISKASAKQREGRAGRCRPGVCYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLL 704

Query: 2188 DPNCRIVDFLQKTLDPPISETIRNAILVLQDIGALSPDEGLTELGEKLGSLPVHPSTSKM 2367
            DPNC+I DFL+KTLDPP+ ETIRNA++VLQDIGALS DE LTELG+KLGSLPVHP TSKM
Sbjct: 705  DPNCKIEDFLRKTLDPPVFETIRNAVIVLQDIGALSVDEKLTELGKKLGSLPVHPLTSKM 764

Query: 2368 LFFAILMNCLEPALTLACASDYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSDQLMVIA 2547
            LFFAIL+NCL+PALTLACASDYRDPF LPM+P+             SLYGGHSDQL VIA
Sbjct: 765  LFFAILLNCLDPALTLACASDYRDPFTLPMLPHEKKRATAAKAELASLYGGHSDQLAVIA 824

Query: 2548 AYDCWKRAKDKGQEAQFCSEYFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQCSLNAR 2727
            A++CWK AK+KGQEAQFCS+YFVSSGTM+ML+ MR QLQ ELI  GF+ ED S CSLNAR
Sbjct: 825  AFECWKSAKEKGQEAQFCSQYFVSSGTMHMLAGMRKQLQTELIRNGFIPEDVSSCSLNAR 884

Query: 2728 DPGILHAVLVAGLYPMVGRLLPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFDQSNSQP 2907
            DPGI+HAVLVAGLYPMVGRLLPP KSG+R VVETA GAKVRLHPHS+NFKLSF +S+ +P
Sbjct: 885  DPGIIHAVLVAGLYPMVGRLLPPHKSGKRSVVETASGAKVRLHPHSNNFKLSFKKSDGRP 944

Query: 2908 LVIYDEITRGDGGMYIRNCSIVGPYPLLIHATEMVVAPAXXXXXXXXXXXXXXXXXXXGI 3087
            L+IYDEITRGDGGM+IRNC+++GP PLL+ ATE+VVAP                    G 
Sbjct: 945  LIIYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAP--------------------GK 984

Query: 3088 ELNTISGRQEERIMSSPDNTVSVVIDRWLKFESTALDVAQIYCLRERLRAAILFKVKYPS 3267
              N ++G+Q E+IMSSPDNTV+VV+DRW  FESTALDVAQIYCLRERL AAI FK  +  
Sbjct: 985  ANNKLNGQQGEKIMSSPDNTVAVVVDRWHSFESTALDVAQIYCLRERLTAAIFFKATHAR 1044

Query: 3268 KVLPPALGASMYAIACILSYDGLSGISPSLKTIGSLTSMKNATEPSGTDS-------KPS 3426
            +VLPP LGAS+YAIACILSYDGLSGIS SL+++ SLTSM NATE   + S        P+
Sbjct: 1045 EVLPPMLGASVYAIACILSYDGLSGISLSLESVDSLTSMVNATEIDNSASGRRRMGQNPN 1104

Query: 3427 AFLRSLLSDAPAPPETSPHYHKPRQMSRSMHRSGTSKPVVEQPHMQIGIDPYQQTHFQGP 3606
             FL++L+S            H  R  S S H           P       PY        
Sbjct: 1105 NFLKTLMS------------HGTRHKSPSKHHKNKGAENWNSPPTYNAWSPY-------- 1144

Query: 3607 LMHPVYVQTQLPGPFMQPIYVPIGLYPVQRTXXXXXXXXXXXXXXXXRTDSFKRRRGTG 3783
             M P     Q P    +P +   G                       R DSFKR+RG G
Sbjct: 1145 -MPPSLTSNQRPSS-QRPSFSGYG--------------SSMHGPYGPRGDSFKRQRGNG 1187


>ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|222857018|gb|EEE94565.1|
            predicted protein [Populus trichocarpa]
          Length = 1195

 Score = 1481 bits (3835), Expect = 0.0
 Identities = 764/1177 (64%), Positives = 913/1177 (77%), Gaps = 14/1177 (1%)
 Frame = +1

Query: 46   KKGYSKNQIDENPNIEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPERAVVHMLCRKRG 225
            KK   K    +NP + E TLIRISKI++ F    DQVYTFEA L+N +RAVVH +C+K G
Sbjct: 3    KKNQRKAAQQQNPRVAEATLIRISKILERFRAAPDQVYTFEANLSNYDRAVVHEVCKKMG 62

Query: 226  LVSKSTGKGKQRRVSICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRDLFTRYPPSDGEQ 405
            + SKS+G+G QRRVS+               N+T L FS E+K VL +LF+ YPP +G  
Sbjct: 63   MKSKSSGRGGQRRVSV-YKNTKKLDDVKGKENLTHLTFSGESKMVLGELFSNYPPEEGGF 121

Query: 406  KGQMLTDHIREVDKKLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTPKLRQIDGERSKL 585
              ++   H     K   KKDD F KPS  KAEIAK++++ A R +   KL+QI   RSKL
Sbjct: 122  GAELEGKHSGTAGKTREKKDDIFSKPSRKKAEIAKKVESFASRIEKDVKLKQIVEGRSKL 181

Query: 586  PIASFREAITSTIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEACKIICTQPRRISA 765
            PIASF + ITSTIE++QVVLISGETGCGKTTQVPQ+LLD+MWGKGEACKI+CTQPRRISA
Sbjct: 182  PIASFMDVITSTIESHQVVLISGETGCGKTTQVPQFLLDHMWGKGEACKIVCTQPRRISA 241

Query: 766  TSVAERISYERGEKVGESIGYKIRLETKGGKRSSIMFCTNGILLRVLVGKGTNDSKTASE 945
             SV+ERISYERGE VG+S+GYKIRLE+KGGK SSI+FCTNG+LLR+LV KG   S+  + 
Sbjct: 242  ISVSERISYERGENVGDSVGYKIRLESKGGKHSSIVFCTNGVLLRILVSKGITGSQNEA- 300

Query: 946  DISSKESIFGVTHIIVDEIHERDRFSDFILTILRDVLPSHPHLRLILMSATLDAERFSQY 1125
            + ++KE+         DEIHERDRFSDF+L I+RD+LPSH HLRLILMSATLDAERFSQY
Sbjct: 301  NTAAKEN---------DEIHERDRFSDFMLAIIRDILPSHSHLRLILMSATLDAERFSQY 351

Query: 1126 FGGCPVIRVPGFTHPVKNFYLEDILSILKSSESNHLDSLSPNDTVQGADLTEDYTASLDE 1305
            FGGCP+IRVPGFT+PVK F+LED+LSIL S + NHLDS  PN   +G +LTE+  A+LDE
Sbjct: 352  FGGCPIIRVPGFTYPVKAFHLEDVLSILNSRDDNHLDSAMPNVLDEGHELTEEDKAALDE 411

Query: 1306 AINLAWSSDEFDPLLELVSSEATPRILNYQDSLNGASPLMVFAGKGNVSDVCMLLSLGAD 1485
            AINLAWS+DEFD LL+LVSSE TP++ +YQ S++G +PLMVFAGKG V DVCMLLSLGA+
Sbjct: 412  AINLAWSNDEFDSLLDLVSSEGTPKVYDYQHSVSGLTPLMVFAGKGRVGDVCMLLSLGAN 471

Query: 1486 CNLCAKDGKTAVEWAQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKYLASVNPEHIDII 1665
            CNL +K G TA++WA++ENQ E  EVI+ H QN ++ S E+  LL+KY+A++NPE ID++
Sbjct: 472  CNLQSKCGLTALKWAERENQEEAAEVIRKHAQNALADSSEQQQLLDKYMATINPELIDVV 531

Query: 1666 LIERLLRKICTDSDEGAVLIFLPGWDDINKTRERLLASPFFEDTSKFVIIALHSMVPSVE 1845
            LIE+L++KIC DS +GA+L+FLPGWDDIN+TRERLLA+PFF+D SKF+II+LHSMVPSVE
Sbjct: 532  LIEQLIKKICVDSKDGAILVFLPGWDDINRTRERLLANPFFKDGSKFIIISLHSMVPSVE 591

Query: 1846 QKKVFKRPPHGSRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLHSSWVS 2025
            QKKVFKRPP G RKIILSTNI+E+A+TIDDVVYVIDSGRMKEKSYDPY+NVSTL SSWVS
Sbjct: 592  QKKVFKRPPQGCRKIILSTNISESAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVS 651

Query: 2026 KASAKQREGRAGRCQPGICYHLYSKTRATSLPEFQVPEIKRMPIEELCLQVKLLDPNCRI 2205
            KASAKQREGRAGRCQPGICYHLYSK R +SLP+FQVPEIKRMPIEELCLQVKLLDP+C+I
Sbjct: 652  KASAKQREGRAGRCQPGICYHLYSKLRESSLPDFQVPEIKRMPIEELCLQVKLLDPHCKI 711

Query: 2206 VDFLQKTLDPPISETIRNAILVLQDIGALSPDEGLTELGEKLGSLPVHPSTSKMLFFAIL 2385
              FLQKTLDPP+ ETIRNA+ VL DIGALS DE LTELGEK+G LPVHP TSKM+FFAIL
Sbjct: 712  EAFLQKTLDPPVPETIRNAVAVLLDIGALSVDETLTELGEKIGCLPVHPLTSKMIFFAIL 771

Query: 2386 MNCLEPALTLACASDYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSDQLMVIAAYDCWK 2565
            MNCL+PALTLACASDYRDPF LPM+PN             SLYGGHSDQL V+AA++CW 
Sbjct: 772  MNCLDPALTLACASDYRDPFTLPMLPNEKKRAAAAKFELASLYGGHSDQLAVLAAFECWN 831

Query: 2566 RAKDKGQEAQFCSEYFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQCSLNARDPGILH 2745
             AK++GQEA FCS+YF+SS TMNML +MR QLQRELI  GF+ E+ S C+ NA  PGI+H
Sbjct: 832  NAKNRGQEASFCSQYFISSSTMNMLQAMRKQLQRELIRKGFIPENVSSCNTNAHVPGIVH 891

Query: 2746 AVLVAGLYPMVGRLLPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFDQSNSQPLVIYDE 2925
            AVLVAGLYPMVGR LPP K+G+R VVET  GAKVRLHP S NFKLSF +SN  PLVIYDE
Sbjct: 892  AVLVAGLYPMVGRFLPP-KNGKR-VVETTSGAKVRLHPQSLNFKLSFWKSNDYPLVIYDE 949

Query: 2926 ITRGDGGMYIRNCSIVGPYPLLIHATEMVVAPA------XXXXXXXXXXXXXXXXXXXGI 3087
            ITRGDGGM+IRNC+++GP PLL+ ATE+VVAPA                         G+
Sbjct: 950  ITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPAENDDEDDEEDDDDYDSADGAESDEDGM 1009

Query: 3088 ELNTISGRQE-ERIMSSPDNTVSVVIDRWLKFESTALDVAQIYCLRERLRAAILFKVKYP 3264
            E++   G Q+ ERIMSSPDN+V VV+DRWL F +TALDVAQIYCLRE+L AAILFKV +P
Sbjct: 1010 EIHGKLGTQQGERIMSSPDNSVMVVVDRWLYFGATALDVAQIYCLREQLSAAILFKVTHP 1069

Query: 3265 SKVLPPALGASMYAIACILSYDGLSGISPSLKTIGSLTSMKNATE-------PSGTDSKP 3423
             K LPPAL A  Y  ACILS DGLSGIS   +++ SLTSM +ATE         G    P
Sbjct: 1070 HKELPPALAAYTYTTACILSNDGLSGISLPGESVESLTSMVHATEIDESCSGRRGISQNP 1129

Query: 3424 SAFLRSLLSDAPAPPETSPHYHKPRQMSRSMHRSGTS 3534
            ++FL SL ++     +T+P YH  R  ++     G++
Sbjct: 1130 NSFLSSLKNNT---QQTAPRYHNARSPNQRPTLQGST 1163


>ref|NP_001044362.1| Os01g0767700 [Oryza sativa Japonica Group]
            gi|53792445|dbj|BAD53353.1| putative DEIH-box RNA/DNA
            helicase [Oryza sativa Japonica Group]
            gi|53793557|dbj|BAD53327.1| putative DEIH-box RNA/DNA
            helicase [Oryza sativa Japonica Group]
            gi|113533893|dbj|BAF06276.1| Os01g0767700 [Oryza sativa
            Japonica Group]
          Length = 1223

 Score = 1460 bits (3779), Expect = 0.0
 Identities = 734/1146 (64%), Positives = 890/1146 (77%), Gaps = 11/1146 (0%)
 Frame = +1

Query: 88   IEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPERAVVHMLCRKRGLVSKSTGKGKQRRV 267
            + E TL+R+SK+++DF     QVY FE G++  ERA +H +CRK G++SKS+G G++R +
Sbjct: 43   VREATLVRVSKVLEDFQASDAQVYKFEPGISKQERAAIHEMCRKMGMISKSSGNGERRCL 102

Query: 268  SICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRDLFTRYPPSDGEQKGQMLTDHIREVDK 447
            S+                 + L FS E + VL+DLF  YPP D E  G  + +   +  K
Sbjct: 103  SV--YKRKQNQGLETEEGPSHLGFSVEARNVLQDLFMHYPPDDAELNGHTVRNSSDKAVK 160

Query: 448  KLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTPKLRQIDGERSKLPIASFREAITSTIE 627
               K D +F +P++ K +I K+++ LA +   + +LR+I  +RSKLPI+S+++AI+ST+E
Sbjct: 161  IQWKPDGAFCRPALRKPDILKKVEMLASKVNKSEQLRKIVQDRSKLPISSYKDAISSTLE 220

Query: 628  TNQVVLISGETGCGKTTQVPQYLLDYMWGKGEACKIICTQPRRISATSVAERISYERGEK 807
             +QVVLISGETGCGKTTQVPQY+LD+MWGKGE+CKI+CTQPRRISA SVAERIS ERGE 
Sbjct: 221  NHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIVCTQPRRISAISVAERISAERGES 280

Query: 808  VGESIGYKIRLETKGGKRSSIMFCTNGILLRVLVGKGTNDSKTASEDISSKESIFGVTHI 987
            VG+++GYKIRLE+KGGK SSIMFCTNG+LLR+L+G+ TN SK  ++  S  +++ G+THI
Sbjct: 281  VGDTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNISKEQNQKRSFDDAVTGITHI 340

Query: 988  IVDEIHERDRFSDFILTILRDVLPSHPHLRLILMSATLDAERFSQYFGGCPVIRVPGFTH 1167
            IVDEIHERDRFSDF+L ILRD+LP +PHLRL+LMSAT+DAERFS YF GCP I+VPGFTH
Sbjct: 341  IVDEIHERDRFSDFMLAILRDLLPLYPHLRLVLMSATIDAERFSNYFSGCPFIQVPGFTH 400

Query: 1168 PVKNFYLEDILSILKSSESNHLDSLSPNDTVQGADLTEDYTASLDEAINLAWSSDEFDPL 1347
            PVK FYLED+LSIL+S   NHLD  + +D  Q + LT+DY +S+DEAINLA  +DEFDPL
Sbjct: 401  PVKTFYLEDVLSILQSVGDNHLDPTT-DDLKQSSLLTDDYKSSMDEAINLALDNDEFDPL 459

Query: 1348 LELVSSEATPRILNYQDSLNGASPLMVFAGKGNVSDVCMLLSLGADCNLCAKDGKTAVEW 1527
            LEL+S+E    I NYQ S  G +PLMV AGKG V D+CMLLS G DC+    DGK+A+ W
Sbjct: 460  LELISAEQNQEIFNYQHSETGVTPLMVLAGKGQVGDICMLLSFGVDCSTRDHDGKSALGW 519

Query: 1528 AQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKYLASVNPEHIDIILIERLLRKICTDSD 1707
            A+Q NQ EV EVIK H++   +K  EE +LL KYLA++NPEHID +LIERLLRKIC DS+
Sbjct: 520  AEQGNQQEVCEVIKKHMECGSAKLTEENELLNKYLATINPEHIDTVLIERLLRKICVDSN 579

Query: 1708 EGAVLIFLPGWDDINKTRERLLASPFFEDTSKFVIIALHSMVPSVEQKKVFKRPPHGSRK 1887
            EGA+L+FLPGW+DIN+TRERLLASPFF+D+SKF++++LHSM+PS EQKKVFKRPP GSRK
Sbjct: 580  EGAILVFLPGWEDINQTRERLLASPFFQDSSKFLVLSLHSMIPSSEQKKVFKRPPAGSRK 639

Query: 1888 IILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLHSSWVSKASAKQREGRAGRC 2067
            IILSTNIAETAVTIDDVV+VIDSGRMKEKSYDPY+NVSTLHSSWVSKA+A+QR+GRAGRC
Sbjct: 640  IILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHSSWVSKANARQRQGRAGRC 699

Query: 2068 QPGICYHLYSKTRATSLPEFQVPEIKRMPIEELCLQVKLLDPNCRIVDFLQKTLDPPISE 2247
            QPG CYHLYS+ RA SL E+Q+PEIKRMPIEELCLQVKLLDPNCRI DFL+KTLDPPI E
Sbjct: 700  QPGTCYHLYSRFRAASLLEYQIPEIKRMPIEELCLQVKLLDPNCRIADFLRKTLDPPIPE 759

Query: 2248 TIRNAILVLQDIGALSPDEGLTELGEKLGSLPVHPSTSKMLFFAILMNCLEPALTLACAS 2427
            T+RNAI VLQD+GAL+ DE LTELGEKLGSLPVHPSTSKML F ILMNCL+PALTLACA+
Sbjct: 760  TVRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPSTSKMLLFGILMNCLDPALTLACAA 819

Query: 2428 DYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSDQLMVIAAYDCWKRAKDKGQEAQFCSE 2607
            DYRDPF+LPM P+             SLYGG+SDQL V+AA DCW+RAKD+GQEAQFCS+
Sbjct: 820  DYRDPFLLPMAPDERKRAAAAKVELASLYGGYSDQLAVVAAMDCWRRAKDRGQEAQFCSK 879

Query: 2608 YFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQCSLNARDPGILHAVLVAGLYPMVGRL 2787
            YFVSS TMNMLS+MR QLQ EL   GF+  DAS CSLNARDPGI+ AVL+AG YPMVGRL
Sbjct: 880  YFVSSNTMNMLSNMRKQLQNELAQRGFVPVDASACSLNARDPGIIRAVLMAGAYPMVGRL 939

Query: 2788 LPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFDQSNSQPLVIYDEITRGDGGMYIRNCS 2967
            LPP K+ RR V+ETA GAKVRLHPHS NF LSF +++  PLVIYDEITRGDGGMYI+N S
Sbjct: 940  LPPRKNTRRAVIETASGAKVRLHPHSCNFNLSFRKTSGNPLVIYDEITRGDGGMYIKNSS 999

Query: 2968 IVGPYPLLIHATEMVVAPAXXXXXXXXXXXXXXXXXXXGIELNTISGRQEERIMSSPDNT 3147
            +VG YPL+I ATEMVVAP                      E   ++  Q + IMSSPDN+
Sbjct: 1000 VVGSYPLIILATEMVVAPPEDDDSDEEDGDSSED------ETEKVTLGQHKEIMSSPDNS 1053

Query: 3148 VSVVIDRWLKFESTALDVAQIYCLRERLRAAILFKVKYPSKVLPPALGASMYAIACILSY 3327
            VSVVIDRWL+F++TALDVAQIYCLRERL +AILFKVK+P  VLPP LGA+MYAIACILSY
Sbjct: 1054 VSVVIDRWLRFDATALDVAQIYCLRERLASAILFKVKHPQDVLPPDLGATMYAIACILSY 1113

Query: 3328 DGLSGISPSLKTIGSLTSMKNATEPSGTDSK-----------PSAFLRSLLSDAPAPPET 3474
            DGL    P++ T   + + + + + S   S+           P  FL SLLSD P     
Sbjct: 1114 DGL----PAMITSDDVATSQGSNQSSAESSRFSQGRRVGYIPPGGFLMSLLSDKPL---N 1166

Query: 3475 SPHYHK 3492
            +PH+ K
Sbjct: 1167 APHFQK 1172


>ref|XP_003567152.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2 [Brachypodium
            distachyon]
          Length = 1272

 Score = 1432 bits (3708), Expect = 0.0
 Identities = 726/1170 (62%), Positives = 894/1170 (76%), Gaps = 8/1170 (0%)
 Frame = +1

Query: 10   PKPERTMVRSGKKKGYSKNQIDENPNIEEPTLIRISKIIDDFFQGTDQVYTFEAGLTNPE 189
            P+P R     G  +   K        + E TL+R++ ++++F     QV+TFEA ++  E
Sbjct: 67   PRPLRGDEERGMGRKGRKGNDGGLGGLSEETLVRVTTVLEEFRASDAQVHTFEANISKQE 126

Query: 190  RAVVHMLCRKRGLVSKSTGKGKQRRVSICXXXXXXXXXXXXXXNVTSLAFSEETKEVLRD 369
            RA +H +CRK G++SKS G  ++R +S+                 + L FSEE + VL+D
Sbjct: 127  RAAIHEICRKMGMISKSKGYAERRCLSV--YKRKQTQGPDKEEGPSKLGFSEEARNVLQD 184

Query: 370  LFTRYPPSDGEQKGQMLTDHIREVDKKLRKKDDSFYKPSMSKAEIAKEMKALAFRTKNTP 549
            LFT YPP+D E  G+ + +   +  K   K D +F +P M K +IAK+++ LA +   + 
Sbjct: 185  LFTHYPPTDAELNGEAVKNSSDKAAKIQWKTDSAFCRPVMHKHDIAKKVEILASKINESR 244

Query: 550  KLRQIDGERSKLPIASFREAITSTIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEAC 729
            +LR+I  +RSKLPI+SF++ I+ST+E NQVVLISGETGCGKTTQVPQY+LD++WGKGE+C
Sbjct: 245  QLRKIVEDRSKLPISSFKDHISSTLENNQVVLISGETGCGKTTQVPQYILDHVWGKGESC 304

Query: 730  KIICTQPRRISATSVAERISYERGEKVGESIGYKIRLETKGGKRSSIMFCTNGILLRVLV 909
            KIICTQPRRISA SVAERIS ERGE VG+++GYKIRLE+KGGK SSIMFCTNG+LLR+L+
Sbjct: 305  KIICTQPRRISAISVAERISAERGEVVGDTVGYKIRLESKGGKNSSIMFCTNGVLLRLLI 364

Query: 910  GKGTNDSKTASEDISSKESIFGVTHIIVDEIHERDRFSDFILTILRDVLPSHPHLRLILM 1089
            G+ TN  K  +   S  +++ G+THIIVDEIHERDRFSDF+L ILRD+LP +PHL L+LM
Sbjct: 365  GRVTNMPKAKNPKRSFDDAVMGITHIIVDEIHERDRFSDFMLAILRDLLPVYPHLHLVLM 424

Query: 1090 SATLDAERFSQYFGGCPVIRVPGFTHPVKNFYLEDILSILKSSESNHLDSLSPNDTVQGA 1269
            SAT+DAERFSQYF GCP+I+VPG T+PVK FYLED+LSIL+S   NHL+  + +D  Q +
Sbjct: 425  SATIDAERFSQYFNGCPIIQVPGHTYPVKIFYLEDVLSILQSVGDNHLNPAT-DDLEQDS 483

Query: 1270 DLTEDYTASLDEAINLAWSSDEFDPLLELVSSEATPRILNYQDSLNGASPLMVFAGKGNV 1449
             LT+DY +S+DE+I++A ++DEFDPL+EL+S E +P I NY+ S +G +PLMVFAGKG +
Sbjct: 484  ILTDDYRSSMDESISMALANDEFDPLIELISVEQSPEIFNYRHSESGVTPLMVFAGKGQI 543

Query: 1450 SDVCMLLSLGADCNLCAKDGKTAVEWAQQENQGEVVEVIKSHLQNVVSKSVEEYDLLEKY 1629
             DVCMLLS G DC+    DGK+A++WAQQENQ +V EVIK H+     KS +E +LL +Y
Sbjct: 544  GDVCMLLSFGVDCSARDHDGKSALDWAQQENQQQVYEVIKKHMDCGSVKSPQENELLNRY 603

Query: 1630 LASVNPEHIDIILIERLLRKICTDSDEGAVLIFLPGWDDINKTRERLLASPFFEDTSKFV 1809
            L ++NPEHID +LIERLLRKIC DS+EGAVL+FLPGW+DIN+TRERL ASP F+D+SKF+
Sbjct: 604  LTTINPEHIDTVLIERLLRKICIDSNEGAVLVFLPGWEDINQTRERLFASPLFQDSSKFL 663

Query: 1810 IIALHSMVPSVEQKKVFKRPPHGSRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPY 1989
            I++LHSM+PSVEQKKVFK PP G RKIILSTNIAETAVTIDDVV+VIDSG+MKEKSYDPY
Sbjct: 664  ILSLHSMIPSVEQKKVFKSPPVGVRKIILSTNIAETAVTIDDVVFVIDSGKMKEKSYDPY 723

Query: 1990 SNVSTLHSSWVSKASAKQREGRAGRCQPGICYHLYSKTRATSLPEFQVPEIKRMPIEELC 2169
            +NVSTLH+SWVS+ASA+QREGRAGRCQPG CYHLYS  RA SLPE+Q+PEIKRMPIEELC
Sbjct: 724  NNVSTLHTSWVSRASARQREGRAGRCQPGTCYHLYSGFRAASLPEYQIPEIKRMPIEELC 783

Query: 2170 LQVKLLDPNCRIVDFLQKTLDPPISETIRNAILVLQDIGALSPDEGLTELGEKLGSLPVH 2349
            LQVKLLDPNCRI DFL+KTLDPPI ET++NAI VLQD+GAL+ DE LT+LGEKLGSLPVH
Sbjct: 784  LQVKLLDPNCRIADFLKKTLDPPIPETVKNAITVLQDLGALTQDEQLTDLGEKLGSLPVH 843

Query: 2350 PSTSKMLFFAILMNCLEPALTLACASDYRDPFILPMVPNXXXXXXXXXXXXXSLYGGHSD 2529
            PSTSKML F ILMNCL+PALTLACA+DYRDPF+LPM P+             SLYGG SD
Sbjct: 844  PSTSKMLLFGILMNCLDPALTLACAADYRDPFVLPMAPDERKKAAAAKVELASLYGGFSD 903

Query: 2530 QLMVIAAYDCWKRAKDKGQEAQFCSEYFVSSGTMNMLSSMRMQLQRELIHTGFMQEDASQ 2709
            QL V+AA+DCW  AKD+GQEA FCS+YFV++ TMNMLS+MR QL  EL   GF+  DAS 
Sbjct: 904  QLAVVAAFDCWICAKDRGQEALFCSKYFVAANTMNMLSNMRKQLHSELSQRGFLPADASA 963

Query: 2710 CSLNARDPGILHAVLVAGLYPMVGRLLPPLKSGRRVVVETACGAKVRLHPHSSNFKLSFD 2889
            CSLNA+ PGI+ AVLVAG YPMVGRLLPP ++ +R VVETA GAKVRLHPHS NF LSF+
Sbjct: 964  CSLNAKVPGIISAVLVAGAYPMVGRLLPPRRNCKRAVVETASGAKVRLHPHSCNFNLSFN 1023

Query: 2890 QSNSQPLVIYDEITRGDGGMYIRNCSIVGPYPLLIHATEMVVAPAXXXXXXXXXXXXXXX 3069
            +S   PL+IYDEITRGDGGMYI+NCS+VG YPL++ ATEM VAP                
Sbjct: 1024 KSYGNPLMIYDEITRGDGGMYIKNCSVVGSYPLVLLATEMAVAPPDDSDEEEGSSEDE-- 1081

Query: 3070 XXXXGIELNTISGRQEERIMSSPDNTVSVVIDRWLKFESTALDVAQIYCLRERLRAAILF 3249
                  E NT SG+Q E IMS PDNTVSV+IDRWL+F++TALD+AQIYCLRERL +AILF
Sbjct: 1082 -----AEKNT-SGQQNEEIMSLPDNTVSVIIDRWLRFDATALDIAQIYCLRERLASAILF 1135

Query: 3250 KVKYPSKVLPPALGASMYAIACILSYDGLSGISPSLKTIGSLTSMKNATEPS-------G 3408
            KVK+P  VLPPALGA+MYA+ACILSYDGL G+  S     +  S +++TE S        
Sbjct: 1136 KVKHPQDVLPPALGATMYAVACILSYDGLPGMVESADLSTNRGSNQSSTEASRFTQGRRA 1195

Query: 3409 TDSKPSAFLRSLLSDAPA-PPETSPHYHKP 3495
            +   P  FL SLLSD P   P+     H P
Sbjct: 1196 SYIPPGGFLMSLLSDIPPNAPQFRKSSHHP 1225